style: cargo fmt config_seed.rs and getting_started.rs

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

.claude-pid

@@ -1 +1 @@
-45402
+91305

.codescenerc

@@ -0,0 +1,9 @@
+{
+  "exclude": [
+    "tools/",
+    "scripts/",
+    "src-tauri/gen/",
+    "coverage/",
+    "dist/"
+  ]
+}

.github/workflows/release.yml

@@ -55,6 +55,11 @@ jobs:
           node-version: '22'
           cache: 'pnpm'
 
+      - name: Setup Bun (required for bundle-qmd.sh)
+        uses: oven-sh/setup-bun@v2
+        with:
+          bun-version: latest
+
       - name: Setup Rust
         uses: dtolnay/rust-toolchain@stable
         with:
@@ -80,6 +85,24 @@ jobs:
           jq --arg v "$VERSION" '.version = $v' src-tauri/tauri.conf.json > tmp.json && mv tmp.json src-tauri/tauri.conf.json
           sed -i '' "s/^version = \".*\"/version = \"$VERSION\"/" src-tauri/Cargo.toml
 
+      - name: Import Apple Developer certificate into keychain
+        env:
+          APPLE_CERTIFICATE: ${{ secrets.APPLE_CERTIFICATE }}
+          APPLE_CERTIFICATE_PASSWORD: ${{ secrets.APPLE_CERTIFICATE_PASSWORD }}
+        run: |
+          # Decode and import the certificate so codesign can use it in beforeBuildCommand
+          CERT_PATH="$RUNNER_TEMP/apple_cert.p12"
+          KEYCHAIN_PATH="$RUNNER_TEMP/laputa-signing.keychain-db"
+          KEYCHAIN_PASSWORD="$(uuidgen)"
+          echo "$APPLE_CERTIFICATE" | base64 --decode > "$CERT_PATH"
+          security create-keychain -p "$KEYCHAIN_PASSWORD" "$KEYCHAIN_PATH"
+          security set-keychain-settings -lut 21600 "$KEYCHAIN_PATH"
+          security unlock-keychain -p "$KEYCHAIN_PASSWORD" "$KEYCHAIN_PATH"
+          security import "$CERT_PATH" -P "$APPLE_CERTIFICATE_PASSWORD" -A -t cert -f pkcs12 -k "$KEYCHAIN_PATH"
+          security list-keychain -d user -s "$KEYCHAIN_PATH"
+          security set-key-partition-list -S apple-tool:,apple: -s -k "$KEYCHAIN_PASSWORD" "$KEYCHAIN_PATH"
+          echo "KEYCHAIN_PATH=$KEYCHAIN_PATH" >> "$GITHUB_ENV"
+
       - name: Build Tauri app (with signing + notarization)
         env:
           TAURI_SIGNING_PRIVATE_KEY: ${{ secrets.TAURI_SIGNING_PRIVATE_KEY }}
@@ -153,7 +176,7 @@ jobs:
           REPO="refactoringhq/laputa-app"
 
           ARM_SIG=$(cat updater-aarch64/*.app.tar.gz.sig)
-          ARM_DMG=$(ls dmg-aarch64/*.dmg | xargs basename)
+          ARM_TARBALL=$(ls updater-aarch64/*.app.tar.gz | xargs basename)
 
           cat > latest.json << EOF
           {
@@ -163,7 +186,7 @@ jobs:
             "platforms": {
               "darwin-aarch64": {
                 "signature": "${ARM_SIG}",
-                "url": "https://github.com/${REPO}/releases/download/${TAG}/${ARM_DMG}"
+                "url": "https://github.com/${REPO}/releases/download/${TAG}/${ARM_TARBALL}"
               }
             }
           }

.husky/pre-push

@@ -47,26 +47,26 @@ fi
 
 # ── 0. TypeScript + Vite build ──────────────────────────────────────────
 echo ""
-echo "📦 [0/4] TypeScript + Vite build..."
+echo "📦 [0/5] TypeScript + Vite build..."
 pnpm exec tsc --noEmit
 pnpm build
 echo "  ✅ Build OK"
 
 # ── 1. Frontend coverage (≥70%) — includes all unit tests ───────────────
 echo ""
-echo "📊 [1/4] Frontend tests + coverage (≥70%)..."
+echo "📊 [1/5] Frontend tests + coverage (≥70%)..."
 pnpm test:coverage --silent
 echo "  ✅ Frontend coverage OK"
 
 # ── 2. Rust lint (clippy + fmt) — fast, run before coverage ─────────────
 echo ""
 if [ "$RUST_CHANGED" = true ]; then
-  echo "🔧 [2/4] Clippy + rustfmt..."
+  echo "🔧 [2/5] Clippy + rustfmt..."
   cargo clippy --manifest-path=src-tauri/Cargo.toml -- -D warnings
   cargo fmt --manifest-path=src-tauri/Cargo.toml -- --check
   echo "  ✅ Rust lint OK"
 else
-  echo "⏭️  [2/4] Rust lint — skipped (no src-tauri/ changes)"
+  echo "⏭️  [2/5] Rust lint — skipped (no src-tauri/ changes)"
 fi
 
 # ── 3. Rust coverage (≥85% lines) ──────────────────────────────────────
@@ -75,9 +75,9 @@ if [ "$RUST_CHANGED" = true ]; then
   LLVM_COV_FLAGS="--no-clean"
   if [ "${LAPUTA_FULL_COVERAGE:-0}" = "1" ]; then
     LLVM_COV_FLAGS=""
-    echo "🦀 [3/4] Rust coverage — FULL (LAPUTA_FULL_COVERAGE=1)..."
+    echo "🦀 [3/5] Rust coverage — FULL (LAPUTA_FULL_COVERAGE=1)..."
   else
-    echo "🦀 [3/4] Rust coverage (≥85%, incremental)..."
+    echo "🦀 [3/5] Rust coverage (≥85%, incremental)..."
   fi
   # Unset GIT_DIR so git tests create isolated repos without inheriting hook context
   unset GIT_DIR GIT_WORK_TREE GIT_INDEX_FILE
@@ -90,12 +90,23 @@ if [ "$RUST_CHANGED" = true ]; then
     -- --test-threads=1
   echo "  ✅ Rust coverage OK"
 else
-  echo "⏭️  [3/4] Rust coverage — skipped (no src-tauri/ changes)"
+  echo "⏭️  [3/5] Rust coverage — skipped (no src-tauri/ changes)"
 fi
 
-# ── 4. CodeScene code health gate (≥9.2) ────────────────────────────────
+# ── 4. Playwright smoke tests (if any exist) ──────────────────────────
 echo ""
-echo "🏥 [4/4] CodeScene code health gate (≥9.2)..."
+SMOKE_FILES=$(find tests/smoke -name '*.spec.ts' 2>/dev/null | head -1)
+if [ -n "$SMOKE_FILES" ]; then
+  echo "🎭 [4/5] Playwright smoke tests..."
+  pnpm playwright:smoke
+  echo "  ✅ Smoke tests OK"
+else
+  echo "⏭️  [4/5] Playwright smoke tests — skipped (no tests/smoke/*.spec.ts)"
+fi
+
+# ── 5. CodeScene code health gate (≥9.2) ────────────────────────────────
+echo ""
+echo "🏥 [5/5] CodeScene code health gate (≥9.2)..."
 if [ -z "$CODESCENE_PAT" ] || [ -z "$CODESCENE_PROJECT_ID" ]; then
   echo "  ⚠️  CODESCENE_PAT or CODESCENE_PROJECT_ID not set — skipping"
 else

CLAUDE.md

@@ -15,11 +15,40 @@ pre_commit_code_health_safeguard    # CodeScene ≥9.2 — if it fails, fix stru
 
 **CI is a safety net, not a discovery tool.** If CI catches something you didn't catch locally, that's a process failure. All these tools are available locally — use them while you code, not just at the end.
 
-## ⛔ BEFORE FIRING laputa-task-done — QA on real vault
+## ⛔ BEFORE FIRING laputa-task-done — Two-phase QA (mandatory)
 
-> **⚠️ TAURI APP ONLY — never test in browser (`pnpm dev` / localhost)**
-> The browser dev server has a fake HTTP server (`/api/*` routes, mock handlers) that doesn't exist in the real Tauri app.
-> If it works in the browser but crashes in Tauri, it's broken. Always test in `pnpm tauri dev`.
+### Phase 1: Playwright browser QA (headless, you do this yourself)
+
+Test every acceptance criterion using Playwright against the dev server **before** marking done. This catches 80% of bugs before Brian sees them.
+
+```bash
+# 1. Start the dev server (use your worktree port)
+pnpm dev --port <N> &
+DEV_PID=$!
+sleep 3  # wait for vite to be ready
+
+# 2. Run Playwright smoke test for this task
+BASE_URL="http://localhost:<N>" npx playwright test tests/smoke/<slug>.spec.ts
+
+# 3. Or run all smoke tests
+BASE_URL="http://localhost:<N>" pnpm playwright:smoke
+
+kill $DEV_PID
+```
+
+**What to test in Playwright:**
+- Every command palette entry from the spec → open `Cmd+K`, type the command name, verify it appears and executes
+- Every keyboard shortcut → send keydown events, verify UI state changes
+- Every UI element described in the spec → verify it renders, is focusable, responds to Tab
+- Edge cases: empty state, long text, rapid keypresses
+
+**Playwright is non-negotiable even if tests pass.** Unit tests verify code; Playwright verifies the user experience in the real browser. Both are required.
+
+> **⚠️ Browser dev server limits**: the dev server uses mock Tauri handlers (`src/mock-tauri.ts`) — file system operations, git commands, and native dialogs are mocked. Test those via `pnpm tauri dev` in Phase 2 if the task touches them.
+
+### Phase 2: Native Tauri QA (Brian does this after you push)
+
+Brian installs the release build and runs keyboard-only QA on the native app. You don't do Phase 2 — but Phase 1 must pass before you fire the done signal, or Brian's QA will fail and the task goes back to To Rework.
 
 1. Acquire lockfile: `echo $$ > /tmp/laputa-qa.lock && trap "rm -f /tmp/laputa-qa.lock" EXIT`
 2. Kill other instances: `pkill -x laputa 2>/dev/null || true; sleep 1`
@@ -29,6 +58,19 @@ pre_commit_code_health_safeguard    # CodeScene ≥9.2 — if it fails, fix stru
 6. If task touches file save: verify `git -C ~/Laputa diff` shows changes
 7. If QA fails → fix and re-run. Do NOT fire the signal until it passes.
 
+**⚠️ QA ≠ tests. QA means using the app as a user.**
+- "Tests pass" is NOT QA. Tests verify code, QA verifies the user experience.
+- The QA comment must describe what you did as a user: "Opened app → Cmd+K → typed 'Trash' → pressed Enter → note disappeared from list → restarted app → note still not visible"
+- Every QA comment must include: the exact keyboard/command palette steps used, what was visible before and after, and any edge case tested.
+- If you cannot test a feature using keyboard only (osascript shortcuts + command palette), the feature is not keyboard-first → QA fails.
+
+**⚠️ Test in a clean environment when the feature depends on state.**
+If a feature involves indexing, fresh installs, first-time setup, or anything that only runs once:
+- **Do not test in the existing dev vault** — it already has the state you're trying to test.
+- **Create a new empty vault** for the test: Cmd+K → "New Vault" (or equivalent), pick a temp folder like `/tmp/test-vault-<slug>`, then test the full first-time flow from scratch.
+- This applies to: search indexing, vault init, getting-started setup, any "on first open" logic.
+- If you can't reproduce the fresh-install scenario locally, the feature is untestable → do not fire done.
+
 Fire done signal only after QA passes:
 ```bash
 rm -f /tmp/laputa-qa.lock
@@ -73,14 +115,70 @@ Tauri v2 + React + TypeScript desktop app. Reads a vault of markdown files with
 
 - **Never develop on `main`** — always on `task/<slug>` branch
 - **Commit every 20–30 min** — atomic commits, one concern per commit (`feat:`, `fix:`, `refactor:`, `test:`, `docs:`)
-- **Update docs/** when changing architecture, abstractions, or significant design
-- **Test as you go** — write tests alongside code, not after
+- **Update docs/** when changing architecture, abstractions, or significant design (mandatory — see rule below)
 
-## Testing
+## ⛔ DOCS — Keep docs/ in sync with code (mandatory)
+
+After any significant feature change, update the relevant `docs/` files **in the same commit**:
+
+- **`docs/ARCHITECTURE.md`** — stack, system overview, component structure, Tauri commands, data flow, backend modules
+- **`docs/ABSTRACTIONS.md`** — domain models, VaultEntry fields, entity types, key abstractions, integration patterns
+- **`docs/GETTING-STARTED.md`** — directory structure, key files, common tasks, test commands, onboarding
+
+**What counts as "significant":**
+- Adding a new Tauri command or backend module
+- Adding a new major component, hook, or feature (not a bugfix)
+- Changing the data model (VaultEntry fields, new types, new config files)
+- Adding a new integration (API, service, transport)
+- Changing the architecture (new panels, new state management, new build steps)
+
+**How to update:**
+1. Read the relevant doc section before making changes
+2. After your code changes, update the doc to reflect the new state
+3. Commit doc changes together with the code — not in a separate follow-up commit
+
+If unsure whether a change is "significant", err on the side of updating. Stale docs are worse than slightly verbose docs.
+
+## TDD — Red/Green/Refactor (mandatory)
+
+**Always use test-driven development.** No production code without a failing test first.
+
+The loop:
+1. **Red** — write a failing test that describes the behavior you want. Run it, confirm it fails for the right reason.
+2. **Green** — write the minimum code to make the test pass. No more, no less.
+3. **Refactor** — clean up the code (extract, rename, simplify) while keeping tests green.
+4. **Commit** — one red/green/refactor cycle = one atomic commit.
+5. Repeat.
+
+**Why this matters:**
+- Forces you to think about behavior before implementation
+- Produces only code that's actually needed (no speculative abstractions)
+- Tests written first are always behavioral and structure-insensitive by construction
+- Tiny cycles = fast feedback, smaller diffs, easier to review
+
+**For bug fixes:**
+1. Write a failing test that reproduces the bug (this is the regression test)
+2. Fix the bug until the test passes
+3. Commit both together: `fix: [bug] — regression test added`
+
+**For Rust:**
+```bash
+cargo watch -x test   # run tests on every save
+```
+
+**For frontend:**
+```bash
+pnpm test --watch     # run tests on every save
+```
+
+**When to deviate:** Pure UI layout/styling work with no logic is the only exception. Everything else — hooks, utilities, Rust commands, state management — must be TDD.
+
+## Testing (quality bar)
 
 - Unit tests must cover real business logic, not "component renders"
-- Every bug fixed manually → add a regression test
-- Every new feature → new tests for new behavior paths
+- Tests test **behavior** (what the code does), not **structure** (how it does it)
+- Every bug fixed → regression test that would have caught it
+- Every new feature → TDD from the start (see above)
 - `pnpm test:coverage` and `cargo llvm-cov` must pass before committing
 
 ## Design File (every UI task)
@@ -103,6 +201,33 @@ node -e "const f=JSON.parse(require('fs').readFileSync('ui-design.pen','utf8'));
 echo '{"children":[],"variables":{}}' > design/<slug>.pen
 ```
 
+## Vault File Retrocompatibility (mandatory for every feature that adds vault files)
+
+Laputa vaults are long-lived. New app versions must work on existing vaults that were created before a feature existed.
+
+**Rule: never assume a vault file exists. Always auto-create if missing.**
+
+Every feature that depends on a vault file or folder must:
+1. **Auto-bootstrap on vault open** — check if the required file/folder exists; if not, create it with defaults. This must be silent and non-blocking.
+2. **Be idempotent** — creating defaults must be safe to run multiple times (never overwrite user data).
+3. **Expose a repair command** — add a `Cmd+K` command like "Restore Default Themes" or "Repair Vault Config" that explicitly re-creates missing files. Users can run this if something is broken.
+
+**General "Repair Vault" command** — when adding a new vault file dependency, register it with the central repair system so that `Cmd+K → "Repair Vault"` fixes everything in one shot.
+
+**Pattern:**
+```
+on vault open:
+  if file X does not exist → create X with defaults  ← silent auto-repair
+  if file X exists but is malformed → log warning, use defaults (don't crash)
+
+on "Repair Vault" command:
+  for each known vault file/folder:
+    if missing → create with defaults
+    if present → leave untouched (idempotent)
+```
+
+This principle applies to: themes, config files, type files, any `.laputa/` subfolder, or any file Laputa expects to find in a vault.
+
 ## macOS / Tauri Gotchas
 
 - `Option+N` on macOS → special chars (`¡`, `™`), not `key:'N'`. Use `e.code` or `Cmd+N`.
@@ -118,6 +243,28 @@ bash ~/.openclaw/skills/laputa-qa/scripts/shortcut.sh "command" "s"
 bash ~/.openclaw/skills/laputa-qa/scripts/click.sh 400 300   # logical coords
 ```
 
+## Menu Bar Discoverability (mandatory for every new command)
+
+The command palette is powerful but not discoverable — users must already know a command exists to find it. The macOS menu bar is where users discover what an app can do.
+
+**Rule: every significant command palette entry must also appear in the menu bar.**
+
+When adding a new command to the palette:
+1. **Identify the right menu bar group** — File, Edit, View, Note, Vault, or create a new group if needed
+2. **Add a menu item** with the same label as the palette command
+3. **Show the keyboard shortcut** next to the menu item (if one exists)
+4. **If no direct shortcut exists**, still add the menu item — it's discoverable and triggers the same action
+
+The menu bar should be organized around what Laputa does:
+- **File** — new note, open vault, switch vault, close
+- **Edit** — undo, redo, find, note actions (rename, trash, duplicate)
+- **View** — view modes, zoom, sidebar, panels
+- **Note** — note-specific actions (move to trash, archive, properties)
+- **Vault** — vault management (themes, config, repair, sync)
+- **Window / Help** — standard macOS items
+
+**This is a QA requirement:** before marking any task done, verify that every new command palette entry has a corresponding menu bar item.
+
 ## Keyboard-First Principle (mandatory for every new feature)
 
 Every feature must be reachable via keyboard. This is both a UX requirement and a QA requirement — Brian tests the native app using keyboard only (osascript key events, no mouse).

demo-vault-v2/.laputa/settings.json

@@ -0,0 +1,3 @@
+{
+  "theme": null
+}

demo-vault-v2/_themes/dark.json

@@ -0,0 +1,33 @@
+{
+  "name": "Dark",
+  "description": "Dark variant with deep navy tones",
+  "colors": {
+    "background": "#0f0f1a",
+    "foreground": "#e0e0e0",
+    "card": "#16162a",
+    "popover": "#1e1e3a",
+    "primary": "#155DFF",
+    "primary-foreground": "#FFFFFF",
+    "secondary": "#2a2a4a",
+    "secondary-foreground": "#e0e0e0",
+    "muted": "#1e1e3a",
+    "muted-foreground": "#888888",
+    "accent": "#2a2a4a",
+    "accent-foreground": "#e0e0e0",
+    "destructive": "#f44336",
+    "border": "#2a2a4a",
+    "input": "#2a2a4a",
+    "ring": "#155DFF",
+    "sidebar-background": "#1a1a2e",
+    "sidebar-foreground": "#e0e0e0",
+    "sidebar-border": "#2a2a4a",
+    "sidebar-accent": "#2a2a4a"
+  },
+  "typography": {
+    "font-family": "'Inter', -apple-system, BlinkMacSystemFont, sans-serif",
+    "font-size-base": "14px"
+  },
+  "spacing": {
+    "sidebar-width": "250px"
+  }
+}

demo-vault-v2/_themes/default.json

@@ -0,0 +1,33 @@
+{
+  "name": "Default",
+  "description": "Light theme with warm, paper-like tones",
+  "colors": {
+    "background": "#FFFFFF",
+    "foreground": "#37352F",
+    "card": "#FFFFFF",
+    "popover": "#FFFFFF",
+    "primary": "#155DFF",
+    "primary-foreground": "#FFFFFF",
+    "secondary": "#EBEBEA",
+    "secondary-foreground": "#37352F",
+    "muted": "#F0F0EF",
+    "muted-foreground": "#787774",
+    "accent": "#EBEBEA",
+    "accent-foreground": "#37352F",
+    "destructive": "#E03E3E",
+    "border": "#E9E9E7",
+    "input": "#E9E9E7",
+    "ring": "#155DFF",
+    "sidebar-background": "#F7F6F3",
+    "sidebar-foreground": "#37352F",
+    "sidebar-border": "#E9E9E7",
+    "sidebar-accent": "#EBEBEA"
+  },
+  "typography": {
+    "font-family": "'Inter', -apple-system, BlinkMacSystemFont, sans-serif",
+    "font-size-base": "14px"
+  },
+  "spacing": {
+    "sidebar-width": "250px"
+  }
+}

demo-vault-v2/_themes/minimal.json

@@ -0,0 +1,33 @@
+{
+  "name": "Minimal",
+  "description": "High contrast, minimal chrome",
+  "colors": {
+    "background": "#FAFAFA",
+    "foreground": "#111111",
+    "card": "#FFFFFF",
+    "popover": "#FFFFFF",
+    "primary": "#000000",
+    "primary-foreground": "#FFFFFF",
+    "secondary": "#F0F0F0",
+    "secondary-foreground": "#111111",
+    "muted": "#F5F5F5",
+    "muted-foreground": "#666666",
+    "accent": "#F0F0F0",
+    "accent-foreground": "#111111",
+    "destructive": "#CC0000",
+    "border": "#E0E0E0",
+    "input": "#E0E0E0",
+    "ring": "#000000",
+    "sidebar-background": "#F5F5F5",
+    "sidebar-foreground": "#111111",
+    "sidebar-border": "#E0E0E0",
+    "sidebar-accent": "#E8E8E8"
+  },
+  "typography": {
+    "font-family": "'SF Mono', 'Menlo', monospace",
+    "font-size-base": "13px"
+  },
+  "spacing": {
+    "sidebar-width": "220px"
+  }
+}

demo-vault-v2/_themes/untitled-2.json

@@ -0,0 +1,33 @@
+{
+  "colors": {
+    "accent": "#EBEBEA",
+    "accent-foreground": "#37352F",
+    "background": "#FFFFFF",
+    "border": "#E9E9E7",
+    "card": "#FFFFFF",
+    "destructive": "#E03E3E",
+    "foreground": "#37352F",
+    "input": "#E9E9E7",
+    "muted": "#F0F0EF",
+    "muted-foreground": "#787774",
+    "popover": "#FFFFFF",
+    "primary": "#155DFF",
+    "primary-foreground": "#FFFFFF",
+    "ring": "#155DFF",
+    "secondary": "#EBEBEA",
+    "secondary-foreground": "#37352F",
+    "sidebar-accent": "#EBEBEA",
+    "sidebar-background": "#F7F6F3",
+    "sidebar-border": "#E9E9E7",
+    "sidebar-foreground": "#37352F"
+  },
+  "description": "Light theme with warm, paper-like tones",
+  "name": "Untitled Theme",
+  "spacing": {
+    "sidebar-width": "250px"
+  },
+  "typography": {
+    "font-family": "'Inter', -apple-system, BlinkMacSystemFont, sans-serif",
+    "font-size-base": "14px"
+  }
+}

demo-vault-v2/_themes/untitled-3.json

@@ -0,0 +1,33 @@
+{
+  "colors": {
+    "accent": "#EBEBEA",
+    "accent-foreground": "#37352F",
+    "background": "#FFFFFF",
+    "border": "#E9E9E7",
+    "card": "#FFFFFF",
+    "destructive": "#E03E3E",
+    "foreground": "#37352F",
+    "input": "#E9E9E7",
+    "muted": "#F0F0EF",
+    "muted-foreground": "#787774",
+    "popover": "#FFFFFF",
+    "primary": "#155DFF",
+    "primary-foreground": "#FFFFFF",
+    "ring": "#155DFF",
+    "secondary": "#EBEBEA",
+    "secondary-foreground": "#37352F",
+    "sidebar-accent": "#EBEBEA",
+    "sidebar-background": "#F7F6F3",
+    "sidebar-border": "#E9E9E7",
+    "sidebar-foreground": "#37352F"
+  },
+  "description": "Light theme with warm, paper-like tones",
+  "name": "Untitled Theme",
+  "spacing": {
+    "sidebar-width": "250px"
+  },
+  "typography": {
+    "font-family": "'Inter', -apple-system, BlinkMacSystemFont, sans-serif",
+    "font-size-base": "14px"
+  }
+}

demo-vault-v2/_themes/untitled-4.json

@@ -0,0 +1,33 @@
+{
+  "colors": {
+    "accent": "#EBEBEA",
+    "accent-foreground": "#37352F",
+    "background": "#FFFFFF",
+    "border": "#E9E9E7",
+    "card": "#FFFFFF",
+    "destructive": "#E03E3E",
+    "foreground": "#37352F",
+    "input": "#E9E9E7",
+    "muted": "#F0F0EF",
+    "muted-foreground": "#787774",
+    "popover": "#FFFFFF",
+    "primary": "#155DFF",
+    "primary-foreground": "#FFFFFF",
+    "ring": "#155DFF",
+    "secondary": "#EBEBEA",
+    "secondary-foreground": "#37352F",
+    "sidebar-accent": "#EBEBEA",
+    "sidebar-background": "#F7F6F3",
+    "sidebar-border": "#E9E9E7",
+    "sidebar-foreground": "#37352F"
+  },
+  "description": "Light theme with warm, paper-like tones",
+  "name": "Untitled Theme",
+  "spacing": {
+    "sidebar-width": "250px"
+  },
+  "typography": {
+    "font-family": "'Inter', -apple-system, BlinkMacSystemFont, sans-serif",
+    "font-size-base": "14px"
+  }
+}

demo-vault-v2/_themes/untitled.json

@@ -0,0 +1,33 @@
+{
+  "colors": {
+    "accent": "#EBEBEA",
+    "accent-foreground": "#37352F",
+    "background": "#FFFFFF",
+    "border": "#E9E9E7",
+    "card": "#FFFFFF",
+    "destructive": "#E03E3E",
+    "foreground": "#37352F",
+    "input": "#E9E9E7",
+    "muted": "#F0F0EF",
+    "muted-foreground": "#787774",
+    "popover": "#FFFFFF",
+    "primary": "#155DFF",
+    "primary-foreground": "#FFFFFF",
+    "ring": "#155DFF",
+    "secondary": "#EBEBEA",
+    "secondary-foreground": "#37352F",
+    "sidebar-accent": "#EBEBEA",
+    "sidebar-background": "#F7F6F3",
+    "sidebar-border": "#E9E9E7",
+    "sidebar-foreground": "#37352F"
+  },
+  "description": "Light theme with warm, paper-like tones",
+  "name": "Untitled Theme",
+  "spacing": {
+    "sidebar-width": "250px"
+  },
+  "typography": {
+    "font-family": "'Inter', -apple-system, BlinkMacSystemFont, sans-serif",
+    "font-size-base": "14px"
+  }
+}

demo-vault-v2/config/ui.config.md

@@ -0,0 +1,5 @@
+---
+type: config
+zoom: 1.3
+view_mode: all
+---

demo-vault-v2/note/note-the-innovators-dilemma.md

@@ -4,6 +4,8 @@ Is A: Note
 Author: "Clayton Christensen"
 Topics: ["[[topic-saas-business]]"]
 URL: "https://example.com/innovators-dilemma"
+trashed: true
+trashed_at: 2026-03-04
 ---
 # The Innovator's Dilemma
 *Clayton Christensen*

demo-vault-v2/note/wikilinks-qa-test.md

@@ -0,0 +1,5 @@
+# Wikilinks QA Test
+
+See [[ProjectX]] and [[Team Goals|Goals]] for details on the project timeline.
+
+This is a test note for QA purposes.

demo-vault-v2/theme/dark.md

@@ -0,0 +1,54 @@
+---
+Is A: Theme
+Description: Dark variant with deep navy tones
+background: "#0f0f1a"
+foreground: "#e0e0e0"
+card: "#16162a"
+popover: "#1e1e3a"
+primary: "#155DFF"
+primary-foreground: "#FFFFFF"
+secondary: "#2a2a4a"
+secondary-foreground: "#e0e0e0"
+muted: "#1e1e3a"
+muted-foreground: "#888888"
+accent: "#2a2a4a"
+accent-foreground: "#e0e0e0"
+destructive: "#f44336"
+border: "#2a2a4a"
+input: "#2a2a4a"
+ring: "#155DFF"
+sidebar: "#1a1a2e"
+sidebar-foreground: "#e0e0e0"
+sidebar-border: "#2a2a4a"
+sidebar-accent: "#2a2a4a"
+text-primary: "#e0e0e0"
+text-secondary: "#888888"
+text-muted: "#666666"
+text-heading: "#e0e0e0"
+bg-primary: "#0f0f1a"
+bg-sidebar: "#1a1a2e"
+bg-hover: "#2a2a4a"
+bg-hover-subtle: "#1e1e3a"
+bg-selected: "#155DFF22"
+border-primary: "#2a2a4a"
+accent-blue: "#155DFF"
+accent-green: "#00B38B"
+accent-orange: "#D9730D"
+accent-red: "#f44336"
+accent-purple: "#A932FF"
+accent-yellow: "#F0B100"
+accent-blue-light: "#155DFF33"
+accent-green-light: "#00B38B33"
+accent-purple-light: "#A932FF33"
+accent-red-light: "#f4433633"
+accent-yellow-light: "#F0B10033"
+font-family: "'Inter', -apple-system, BlinkMacSystemFont, sans-serif"
+font-size-base: 14px
+editor-font-size: 16
+editor-line-height: 1.5
+editor-max-width: 720
+---
+
+# Dark Theme
+
+A dark theme with deep navy tones for comfortable night-time reading.

demo-vault-v2/theme/default.md

@@ -0,0 +1,54 @@
+---
+Is A: Theme
+Description: Light theme with warm, paper-like tones
+background: "#FFFFFF"
+foreground: "#37352F"
+card: "#FFFFFF"
+popover: "#FFFFFF"
+primary: "#155DFF"
+primary-foreground: "#FFFFFF"
+secondary: "#EBEBEA"
+secondary-foreground: "#37352F"
+muted: "#F0F0EF"
+muted-foreground: "#787774"
+accent: "#EBEBEA"
+accent-foreground: "#37352F"
+destructive: "#E03E3E"
+border: "#E9E9E7"
+input: "#E9E9E7"
+ring: "#155DFF"
+sidebar: "#F7F6F3"
+sidebar-foreground: "#37352F"
+sidebar-border: "#E9E9E7"
+sidebar-accent: "#EBEBEA"
+text-primary: "#37352F"
+text-secondary: "#787774"
+text-muted: "#B4B4B4"
+text-heading: "#37352F"
+bg-primary: "#FFFFFF"
+bg-sidebar: "#F7F6F3"
+bg-hover: "#EBEBEA"
+bg-hover-subtle: "#F0F0EF"
+bg-selected: "#E8F4FE"
+border-primary: "#E9E9E7"
+accent-blue: "#155DFF"
+accent-green: "#00B38B"
+accent-orange: "#D9730D"
+accent-red: "#E03E3E"
+accent-purple: "#A932FF"
+accent-yellow: "#F0B100"
+accent-blue-light: "#155DFF14"
+accent-green-light: "#00B38B14"
+accent-purple-light: "#A932FF14"
+accent-red-light: "#E03E3E14"
+accent-yellow-light: "#F0B10014"
+font-family: "'Inter', -apple-system, BlinkMacSystemFont, sans-serif"
+font-size-base: 14px
+editor-font-size: 16
+editor-line-height: 1.5
+editor-max-width: 720
+---
+
+# Default Theme
+
+The default light theme for Laputa. Clean and warm, inspired by Notion.

demo-vault-v2/theme/minimal.md

@@ -0,0 +1,54 @@
+---
+Is A: Theme
+Description: High contrast, minimal chrome
+background: "#FAFAFA"
+foreground: "#111111"
+card: "#FFFFFF"
+popover: "#FFFFFF"
+primary: "#000000"
+primary-foreground: "#FFFFFF"
+secondary: "#F0F0F0"
+secondary-foreground: "#111111"
+muted: "#F5F5F5"
+muted-foreground: "#666666"
+accent: "#F0F0F0"
+accent-foreground: "#111111"
+destructive: "#CC0000"
+border: "#E0E0E0"
+input: "#E0E0E0"
+ring: "#000000"
+sidebar: "#F5F5F5"
+sidebar-foreground: "#111111"
+sidebar-border: "#E0E0E0"
+sidebar-accent: "#E8E8E8"
+text-primary: "#111111"
+text-secondary: "#666666"
+text-muted: "#999999"
+text-heading: "#111111"
+bg-primary: "#FAFAFA"
+bg-sidebar: "#F5F5F5"
+bg-hover: "#EBEBEB"
+bg-hover-subtle: "#F5F5F5"
+bg-selected: "#00000014"
+border-primary: "#E0E0E0"
+accent-blue: "#000000"
+accent-green: "#006600"
+accent-orange: "#996600"
+accent-red: "#CC0000"
+accent-purple: "#660099"
+accent-yellow: "#996600"
+accent-blue-light: "#00000014"
+accent-green-light: "#00660014"
+accent-purple-light: "#66009914"
+accent-red-light: "#CC000014"
+accent-yellow-light: "#99660014"
+font-family: "'SF Mono', 'Menlo', monospace"
+font-size-base: 13px
+editor-font-size: 15
+editor-line-height: 1.6
+editor-max-width: 680
+---
+
+# Minimal Theme
+
+High contrast, minimal chrome. Monospace typography throughout.

design/mcp-autodetect-status-bar.pen

@@ -0,0 +1 @@
+{"children":[],"variables":{}}

design/search-bundle-qmd.pen

@@ -0,0 +1 @@
+{"children":[{"id":"status-bar-indexing","type":"frame","name":"StatusBar - Indexing Progress States","layout":"vertical","x":0,"y":0,"width":1400,"height":400,"gap":24,"padding":24,"fill":"#F7F6F3","children":[{"id":"title","type":"text","content":"StatusBar Indexing Progress - search-bundle-qmd","fontSize":20,"fontWeight":"600","fill":"#37352F"},{"id":"desc","type":"text","content":"The indexing badge appears in the StatusBar left section, after the pending changes badge. It shows the current indexing phase with a spinner icon (Loader2) during active phases and a Search icon when complete.","fontSize":14,"fill":"#9B9A97","width":900},{"id":"states","type":"frame","name":"States","layout":"vertical","gap":16,"width":1350,"children":[{"id":"state-idle","type":"frame","layout":"horizontal","gap":8,"alignItems":"center","children":[{"id":"label-idle","type":"text","content":"idle:","fontSize":12,"fontWeight":"600","fill":"#9B9A97","width":100},{"id":"val-idle","type":"text","content":"(hidden - no badge shown)","fontSize":12,"fill":"#9B9A97"}]},{"id":"state-installing","type":"frame","layout":"horizontal","gap":8,"alignItems":"center","children":[{"id":"label-install","type":"text","content":"installing:","fontSize":12,"fontWeight":"600","fill":"#3b82f6","width":100},{"id":"val-install","type":"text","content":"| [spinner] Installing search\u2026","fontSize":12,"fill":"#3b82f6"}]},{"id":"state-scanning","type":"frame","layout":"horizontal","gap":8,"alignItems":"center","children":[{"id":"label-scan","type":"text","content":"scanning:","fontSize":12,"fontWeight":"600","fill":"#3b82f6","width":100},{"id":"val-scan","type":"text","content":"| [spinner] Indexing\u2026 342/1,057","fontSize":12,"fill":"#3b82f6"}]},{"id":"state-embedding","type":"frame","layout":"horizontal","gap":8,"alignItems":"center","children":[{"id":"label-embed","type":"text","content":"embedding:","fontSize":12,"fontWeight":"600","fill":"#3b82f6","width":100},{"id":"val-embed","type":"text","content":"| [spinner] Embedding\u2026 50/200","fontSize":12,"fill":"#3b82f6"}]},{"id":"state-complete","type":"frame","layout":"horizontal","gap":8,"alignItems":"center","children":[{"id":"label-done","type":"text","content":"complete:","fontSize":12,"fontWeight":"600","fill":"#22c55e","width":100},{"id":"val-done","type":"text","content":"| [search icon] Index ready  (auto-dismisses after 5s)","fontSize":12,"fill":"#22c55e"}]},{"id":"state-error","type":"frame","layout":"horizontal","gap":8,"alignItems":"center","children":[{"id":"label-err","type":"text","content":"error:","fontSize":12,"fontWeight":"600","fill":"#f97316","width":100},{"id":"val-err","type":"text","content":"| [search icon] Index error  (orange accent)","fontSize":12,"fill":"#f97316"}]}]},{"id":"flow","type":"frame","name":"Flow","layout":"vertical","gap":8,"width":1350,"children":[{"id":"flow-title","type":"text","content":"Auto-indexing Flow","fontSize":16,"fontWeight":"600","fill":"#37352F"},{"id":"flow-desc","type":"text","content":"1. Vault opens \u2192 useIndexing checks index status via get_index_status\n2. If qmd missing or collection missing or pending embeds \u2192 triggers start_indexing\n3. Rust emits indexing-progress events (installing \u2192 scanning \u2192 embedding \u2192 complete)\n4. StatusBar shows IndexingBadge with spinner + phase label + progress counts\n5. On file save \u2192 trigger_incremental_index runs qmd update in background\n6. Complete phase auto-dismisses after 5 seconds","fontSize":13,"fill":"#37352F","width":900}]}]}],"variables":{}}

design/sync-conflict-resolution.pen

@@ -0,0 +1 @@
+{"children":[],"variables":{}}

docs/ABSTRACTIONS.md

@@ -8,24 +8,32 @@ All data lives in markdown files with YAML frontmatter. There is no database —
 
 ### VaultEntry
 
-The core data type representing a single note, defined identically in Rust (`src-tauri/src/vault.rs`) and TypeScript (`src/types.ts`):
+The core data type representing a single note, defined in Rust (`src-tauri/src/vault/mod.rs`) and TypeScript (`src/types.ts`):
 
 ```typescript
 // src/types.ts
 interface VaultEntry {
-  path: string          // Absolute file path: /Users/luca/Laputa/project/my-project.md
-  filename: string      // Just the filename: my-project.md
-  title: string         // Extracted from first # heading, or filename as fallback
-  isA: string | null    // Entity type: Project, Procedure, Person, etc.
-  aliases: string[]     // Alternative names for wikilink resolution
-  belongsTo: string[]   // Parent relationships (wikilinks)
-  relatedTo: string[]   // Related entity links (wikilinks)
-  status: string | null // Active, Done, Paused, Archived, Dropped
-  owner: string | null  // Person responsible
-  cadence: string | null // Update frequency: Weekly, Monthly, etc.
+  path: string              // Absolute file path
+  filename: string          // Just the filename
+  title: string             // From first # heading, or filename fallback
+  isA: string | null        // Entity type: Project, Procedure, Person, etc.
+  aliases: string[]         // Alternative names for wikilink resolution
+  belongsTo: string[]       // Parent relationships (wikilinks)
+  relatedTo: string[]       // Related entity links (wikilinks)
+  relationships: Record<string, string[]>  // All frontmatter fields containing wikilinks
+  outgoingLinks: string[]   // All [[wikilinks]] found in note body
+  status: string | null     // Active, Done, Paused, Archived, Dropped
+  owner: string | null      // Person responsible
+  cadence: string | null    // Update frequency: Weekly, Monthly, etc.
   modifiedAt: number | null // Unix timestamp (seconds)
   createdAt: number | null  // Unix timestamp (seconds)
   fileSize: number
+  wordCount: number | null  // Body word count (excludes frontmatter)
+  snippet: string | null    // First 200 chars of body
+  archived: boolean         // Archived flag
+  trashed: boolean          // Trashed flag
+  trashedAt: number | null  // When trashed (for auto-purge)
+  properties: Record<string, string>  // Scalar frontmatter fields (custom properties)
 }
 ```
 
@@ -47,26 +55,41 @@ Entity type is inferred from the folder structure. The vault is organized by typ
 ├── quarter/        → "Quarter"
 ├── journal/        → "Journal"
 ├── essay/          → "Essay"
-└── evergreen/      → "Evergreen"
+├── evergreen/      → "Evergreen"
+├── theme/          → "Theme"      ← vault-based themes
+└── config/         → "Config"     ← meta-configuration files (agents.md, etc.)
 ```
 
-Mapping logic lives in `vault.rs:parse_md_file()`. If a folder doesn't match any known type, the folder name is capitalized and used as-is.
+Mapping logic lives in `vault/mod.rs:parse_md_file()`. If a folder doesn't match any known type, the folder name is capitalized and used as-is.
 
 ### Types as Files
 
 Each entity type can have a corresponding **type document** in the `type/` folder (e.g., `type/project.md`, `type/person.md`). Type documents:
 
 - Have `Is A: Type` in their frontmatter
-- Describe what the type means, its expected properties, and how it relates to other types
-- Are navigable entities — they appear in the sidebar under "Types" and can be opened/edited like any other note
+- Define type metadata: icon, color, order, sidebar label, template, sort, view, visibility
+- Are navigable entities — they appear in the sidebar under "Types" and can be opened/edited like any note
 - Serve as the "definition" for their type category
 
+**Type document properties** (read by Rust and used in the UI):
+
+| Property | Type | Description |
+|----------|------|-------------|
+| `icon` | string | Phosphor icon name (kebab-case, e.g., "cooking-pot") |
+| `color` | string | Accent color: red, purple, blue, green, yellow, orange |
+| `order` | number | Sidebar display order (lower = higher priority) |
+| `sidebar_label` | string | Custom label overriding auto-pluralization |
+| `template` | string | Markdown template for new notes of this type |
+| `sort` | string | Default sort: "modified:desc", "title:asc", "property:Priority:asc" |
+| `view` | string | Default view mode: "all", "editor-list", "editor-only" |
+| `visible` | bool | Whether type appears in sidebar (default: true) |
+
 **Type relationship**: When any entry has an `isA` value (e.g., "Project"), the Rust backend automatically adds a `"Type"` entry to its `relationships` map pointing to `[[type/project]]`. This makes the type navigable from the Inspector panel.
 
 **UI behavior**:
-- Clicking a section group header (e.g., "Projects") pins the type document at the top of the NoteList if it exists, with instances listed below
+- Clicking a section group header pins the type document at the top of the NoteList if it exists
 - Viewing a type document in entity view shows an "Instances" group listing all entries of that type
-- The Type field in the Inspector properties panel is rendered as a clickable chip that navigates to the type document
+- The Type field in the Inspector is rendered as a clickable chip that navigates to the type document
 
 ### Frontmatter Format
 
@@ -88,24 +111,48 @@ aliases:
 ---
 ```
 
-Supported value types (defined in `src-tauri/src/frontmatter.rs` as `FrontmatterValue`):
+Supported value types (defined in `src-tauri/src/frontmatter/yaml.rs` as `FrontmatterValue`):
 - **String**: `status: Active`
 - **Number**: `priority: 5`
 - **Bool**: `archived: true`
 - **List**: Multi-line `  - item` or inline `[item1, item2]`
 - **Null**: `owner:` (empty value)
 
+### Custom Relationships
+
+The Rust parser scans all frontmatter keys for fields containing `[[wikilinks]]`. Any non-standard field with wikilink values is captured in the `relationships` HashMap:
+
+```yaml
+---
+Topics:
+  - "[[topic/writing]]"
+  - "[[topic/productivity]]"
+Key People:
+  - "[[person/matteo-cellini]]"
+---
+```
+
+Becomes: `relationships["Topics"] = ["[[topic/writing]]", "[[topic/productivity]]"]`
+
+This enables arbitrary, extensible relationship types without code changes.
+
+### Outgoing Links
+
+All `[[wikilinks]]` in the note body (not frontmatter) are extracted by regex and stored in `outgoingLinks`. Used for backlink detection and relationship graphs.
+
 ### Title Extraction
 
-Title comes from the first `# Heading` in the markdown body. If none is found, the filename (without `.md`) is used as fallback. This logic lives in `vault.rs:extract_title()`.
+Title comes from the first `# Heading` in the markdown body. If none is found, the filename (without `.md`) is used as fallback. Logic in `vault/parsing.rs:extract_title()`.
 
 ### Sidebar Selection
 
 Navigation state is modeled as a discriminated union:
 
 ```typescript
+type SidebarFilter = 'all' | 'archived' | 'trash' | 'changes' | 'pulse'
+
 type SidebarSelection =
-  | { kind: 'filter'; filter: 'all' | 'favorites' }
+  | { kind: 'filter'; filter: SidebarFilter }
   | { kind: 'sectionGroup'; type: string }    // e.g. type: 'Project'
   | { kind: 'entity'; entry: VaultEntry }      // specific entity selected
   | { kind: 'topic'; entry: VaultEntry }        // topic selected
@@ -115,49 +162,60 @@ type SidebarSelection =
 
 ### Vault Scanning (Rust)
 
-`vault::scan_vault(path)` in `src-tauri/src/vault.rs`:
+`vault::scan_vault(path)` in `src-tauri/src/vault/mod.rs`:
 
 1. Validates the path exists and is a directory
-2. Uses `walkdir` to recursively traverse the directory (follows symlinks)
+2. Uses `walkdir` to recursively traverse (follows symlinks)
 3. Filters to `.md` files only
 4. For each file, calls `parse_md_file()`:
-   - Reads file content with `fs::read_to_string()`
+   - Reads content with `fs::read_to_string()`
    - Parses frontmatter with `gray_matter::Matter::<YAML>`
    - Extracts title from first `#` heading
-   - Infers entity type from parent folder name
-   - Parses dates (`created_at`, `created_time`) as ISO 8601 to Unix timestamps
-   - Collects file metadata (size, modification time)
-5. Sorts results by `modified_at` descending (newest first)
+   - Infers entity type from parent folder name (or explicit `Is A`/`type` frontmatter)
+   - Parses dates as ISO 8601 to Unix timestamps
+   - Extracts relationships, outgoing links, custom properties, word count, snippet
+5. Sorts by `modified_at` descending
 6. Skips unparseable files with a warning log
 
+### Vault Caching
+
+`vault::scan_vault_cached(path)` wraps scanning with git-based caching:
+
+1. Reads `.laputa-cache.json` if it exists
+2. Compares cache version, vault path, and git HEAD commit hash
+3. If cache is valid and same commit → only re-parse uncommitted changed files
+4. If different commit → use `git diff` to find changed files → selective re-parse
+5. If no cache → full scan
+6. Writes updated cache after every scan
+
 ### Frontmatter Manipulation (Rust)
 
-`frontmatter::update_frontmatter_content()` in `src-tauri/src/frontmatter.rs` performs line-by-line YAML editing:
+`frontmatter/ops.rs:update_frontmatter_content()` performs line-by-line YAML editing:
 
 1. Finds the frontmatter block between `---` delimiters
-2. Iterates through lines looking for the target key (handles quoted keys like `"Is A"`)
+2. Iterates through lines looking for the target key
 3. If found: replaces the value (consuming multi-line list items if present)
-4. If not found: appends the new key-value at the end of the frontmatter
-5. If no frontmatter exists: creates a new `---` block with the key-value
+4. If not found: appends the new key-value at the end
+5. If no frontmatter exists: creates a new `---` block
 
 The `with_frontmatter()` helper wraps this in a read-transform-write cycle on the actual file.
 
 ### Content Loading
 
-- **Tauri mode**: Content is loaded on-demand when a tab is opened via `invoke('get_note_content', { path })`
-- **Browser mode**: All content is loaded at startup from `MOCK_CONTENT` in `mock-tauri.ts`
+- **Tauri mode**: Content loaded on-demand when a tab is opened via `invoke('get_note_content', { path })`
+- **Browser mode**: All content loaded at startup from mock data
 - Content for backlink detection (`allContent`) is stored in memory as `Record<string, string>`
 
 ## Git Integration
 
-Git operations live in `src-tauri/src/git.rs`. All operations shell out to the `git` CLI (not libgit2).
+Git operations live in `src-tauri/src/git/`. All operations shell out to the `git` CLI (not libgit2).
 
 ### Data Types
 
 ```typescript
 interface GitCommit {
-  hash: string       // Full SHA-1
-  shortHash: string  // First 7 chars
+  hash: string
+  shortHash: string
   message: string
   author: string
   date: number       // Unix timestamp
@@ -168,32 +226,54 @@ interface ModifiedFile {
   relativePath: string  // Relative to vault root
   status: 'modified' | 'added' | 'deleted' | 'untracked' | 'renamed'
 }
+
+interface PulseCommit {
+  hash: string
+  shortHash: string
+  message: string
+  date: number
+  githubUrl: string | null
+  files: PulseFile[]
+  added: number
+  modified: number
+  deleted: number
+}
 ```
 
 ### Operations
 
-| Operation | Git command | Notes |
-|-----------|------------|-------|
-| File history | `git log --format=%H\|%h\|%an\|%aI\|%s -n 20 -- <file>` | Last 20 commits for a file |
-| Modified files | `git status --porcelain` | Filtered to `.md` files only |
-| File diff | `git diff -- <file>`, fallback to `--cached`, then synthetic diff for untracked | Unified diff format |
-| Commit | `git add -A && git commit -m "<message>"` | Stages all changes |
-| Push | `git push` | Pushes to upstream of current branch |
+| Module | Operation | Notes |
+|--------|-----------|-------|
+| `history.rs` | File history | `git log` — last 20 commits per file |
+| `status.rs` | Modified files | `git status --porcelain` — filtered to `.md` |
+| `status.rs` | File diff | `git diff`, fallback to `--cached`, then synthetic for untracked |
+| `commit.rs` | Commit | `git add -A && git commit -m "..."` |
+| `remote.rs` | Pull / Push | `git pull --rebase` / `git push` |
+| `conflict.rs` | Conflict resolution | Detect conflicts, resolve with ours/theirs/manual |
+| `pulse.rs` | Activity feed | `git log` with `--name-status` for file changes |
+
+### Auto-Sync
+
+`useAutoSync` hook handles automatic git sync:
+- Configurable interval (from app settings: `auto_pull_interval_minutes`)
+- Pulls on interval, pushes after commits
+- Detects merge conflicts → opens `ConflictResolverModal`
 
 ### Frontend Integration
 
-- **Modified file badges**: Loaded at startup, shown in sidebar and breadcrumb bar
-- **Diff view**: Loaded on-demand when user clicks the diff toggle in the breadcrumb bar
-- **Git history**: Loaded when active tab changes, shown in Inspector panel
-- **Commit dialog**: Triggered from sidebar, runs commit + push
+- **Modified file badges**: Orange dots in sidebar and tab bar
+- **Diff view**: Toggle in breadcrumb bar → shows unified diff
+- **Git history**: Shown in Inspector panel for active note
+- **Commit dialog**: Triggered from sidebar or Cmd+K
+- **Pulse view**: Activity feed when Pulse filter is selected
 
 ## BlockNote Customization
 
-The editor uses [BlockNote](https://www.blocknotejs.org/) (not CodeMirror 6) for rich text editing.
+The editor uses [BlockNote](https://www.blocknotejs.org/) for rich text editing, with CodeMirror 6 available as a raw editing alternative.
 
 ### Custom Wikilink Inline Content
 
-Defined in `src/components/Editor.tsx`:
+Defined in `src/components/editorSchema.tsx`:
 
 ```typescript
 const WikiLink = createReactInlineContentSpec(
@@ -202,69 +282,196 @@ const WikiLink = createReactInlineContentSpec(
     propSchema: { target: { default: "" } },
     content: "none",
   },
-  {
-    render: (props) => (
-      <span className="wikilink" data-target={props.inlineContent.props.target}>
-        {props.inlineContent.props.target}
-      </span>
-    ),
-  }
+  { render: (props) => <span className="wikilink">...</span> }
 )
-
-const schema = BlockNoteSchema.create({
-  inlineContentSpecs: {
-    ...defaultInlineContentSpecs,
-    wikilink: WikiLink,
-  },
-})
 ```
 
 ### Markdown-to-BlockNote Pipeline
 
-Since BlockNote doesn't natively understand `[[wikilinks]]`, content goes through a preprocessing pipeline in `src/utils/wikilinks.ts`:
-
 ```
 Raw markdown
   → splitFrontmatter() → [yaml, body]
   → preProcessWikilinks(body) → replaces [[target]] with Unicode placeholder tokens
   → editor.tryParseMarkdownToBlocks() → BlockNote block tree
-  → injectWikilinks(blocks) → walks tree, replaces placeholder text with wikilink inline content nodes
+  → injectWikilinks(blocks) → walks tree, replaces placeholders with wikilink inline content nodes
   → editor.replaceBlocks()
 ```
 
-Placeholder tokens use `\u2039` (single left-pointing angle quotation mark) and `\u203A` (single right-pointing) to avoid colliding with markdown syntax.
+Placeholder tokens use `\u2039` and `\u203A` to avoid colliding with markdown syntax.
+
+### BlockNote-to-Markdown Pipeline (Save)
+
+```
+BlockNote blocks
+  → editor.blocksToMarkdownLossy()
+  → postProcessWikilinks() → restore [[target]] syntax from wikilink nodes
+  → prepend frontmatter yaml
+  → invoke('save_note_content', { path, content })
+```
 
 ### Wikilink Navigation
 
 Two navigation mechanisms:
 
-1. **Click handler**: A DOM event listener on `.editor__blocknote-container` catches clicks on `.wikilink` elements and calls `onNavigateWikilink(target)`.
+1. **Click handler**: DOM event listener on `.editor__blocknote-container` catches clicks on `.wikilink` elements → `onNavigateWikilink(target)`.
+2. **Suggestion menu**: Typing `[[` triggers `SuggestionMenuController` with filtered vault entries.
 
-2. **Suggestion menu**: Typing `[[` triggers BlockNote's `SuggestionMenuController`, which shows a filtered list of all vault entries. Selecting one inserts a wikilink inline content node.
+Wikilink resolution (`useNoteActions`) uses fuzzy matching: exact title → alias → path stem → filename stem → slug-to-words.
 
-Wikilink resolution in `useNoteActions.handleNavigateWikilink()` uses fuzzy matching:
-- Exact title match
-- Alias match
-- Path stem match (e.g., `person/matteo-cellini`)
-- Filename stem match
-- Slug-to-words match (e.g., `matteo-cellini` → `matteo cellini`)
+### Raw Editor Mode
+
+Toggle via Cmd+K → "Raw Editor" or breadcrumb bar button. Uses CodeMirror 6 (`useCodeMirror` hook) to edit the raw markdown + frontmatter directly. Changes saved via the same `save_note_content` command.
 
 ## Theme System
 
 See [THEMING.md](./THEMING.md) for the full theme system documentation.
 
-In brief: `src/theme.json` defines editor typography and styling as nested JSON. The `useEditorTheme` hook flattens it into CSS custom properties that are applied as inline styles on the BlockNote container.
+### Overview
+
+Two-layer theming:
+1. **Global CSS variables** (`src/index.css`): App-wide colors via `:root`, bridged to Tailwind v4
+2. **Editor theme** (`src/theme.json`): BlockNote typography, flattened to CSS vars by `useEditorTheme`
+
+### Vault-Based Themes
+
+Themes are markdown notes in `theme/` with `Is A: Theme` frontmatter. Each property becomes a CSS variable with `--` prefix.
+
+```yaml
+---
+Is A: Theme
+Description: Light theme with warm, paper-like tones
+background: "#FFFFFF"
+foreground: "#37352F"
+accent-blue: "#155DFF"
+editor-font-size: 16
+editor-line-height: 1.5
+---
+```
+
+### ThemeManager
+
+`useThemeManager` hook manages the theme lifecycle:
+
+```typescript
+interface ThemeManager {
+  themes: ThemeFile[]
+  activeThemeId: string | null
+  activeTheme: ThemeFile | null
+  isDark: boolean
+  switchTheme(themeId: string): Promise<void>
+  createTheme(name?: string): Promise<string>
+  reloadThemes(): Promise<void>
+  updateThemeProperty(key: string, value: string): Promise<void>
+}
+```
+
+- Detects dark backgrounds via luminance calculation → sets `color-scheme` and `data-theme-mode`
+- Live preview: re-applies when active theme note is saved
+- Three built-in themes: Default (light), Dark (deep navy), Minimal (high contrast)
+- Legacy JSON themes (`_themes/*.json`) supported for backward compatibility
+
+### Theme Property Editor
+
+`ThemePropertyEditor` component provides an interactive UI for editing theme properties. Uses `themeSchema.ts` to determine input types (color picker, number slider, text field) based on property names and values.
 
 ## Inspector Abstraction
 
-The Inspector panel (`src/components/Inspector.tsx`) is composed of four sub-panels:
+The Inspector panel (`src/components/Inspector.tsx`) is composed of sub-panels:
 
-1. **DynamicPropertiesPanel** (`src/components/DynamicPropertiesPanel.tsx`): Renders frontmatter as editable key-value pairs with two distinct sections:
-   - **Editable properties** (top): frontmatter fields the user can modify — shown with interactive hover styling (`hover:bg-muted`), cursor pointer, and click-to-edit. Includes Type badge, Status pill, boolean toggles, array tag pills, and text fields.
-   - **Info section** (bottom, separated by border): read-only derived metadata — Modified, Created, Words, File Size. Uses muted text color (`--text-muted`) with no hover states or click interaction. These fields are computed from file metadata and content, not from frontmatter.
-   - Keys in `SKIP_KEYS` (`aliases`, `notion_id`, `workspace`, `is_a`, `Is A`) are hidden from the editable section since they are either internal or already displayed elsewhere (e.g., `is_a` is shown via the TypeRow badge).
-2. **Relationships**: Shows `belongs_to` and `related_to` wikilinks as clickable chips.
-3. **Backlinks**: Scans `allContent` for notes that reference the current note via `[[title]]` or `[[path]]`.
-4. **Git History**: Shows the last few commits from `gitHistory` state.
+1. **DynamicPropertiesPanel** (`src/components/DynamicPropertiesPanel.tsx`): Renders frontmatter as editable key-value pairs:
+   - **Editable properties** (top): Type badge, Status pill with dropdown, boolean toggles, array tag pills, text fields. Click-to-edit interaction.
+   - **Info section** (bottom, separated by border): Read-only derived metadata — Modified, Created, Words, File Size. Uses muted styling with no interaction.
+   - Keys in `SKIP_KEYS` (`aliases`, `notion_id`, `workspace`, `is_a`, `Is A`) are hidden from the editable section.
 
-Frontmatter parsing on the TypeScript side is handled by `src/utils/frontmatter.ts:parseFrontmatter()`, a lightweight YAML parser that handles strings, booleans, inline arrays, and multi-line lists.
+2. **RelationshipsPanel**: Shows `belongs_to`, `related_to`, and all custom relationship fields as clickable wikilink chips.
+
+3. **BacklinksPanel**: Scans `allContent` for notes that reference the current note via `[[title]]` or `[[path]]`.
+
+4. **GitHistoryPanel**: Shows recent commits from file history with relative timestamps.
+
+## Search & Indexing
+
+### Search Modes
+
+```typescript
+type SearchMode = 'keyword' | 'semantic' | 'hybrid'
+
+interface SearchResult {
+  title: string
+  path: string
+  snippet: string
+  score: number
+}
+
+interface SearchResponse {
+  results: SearchResult[]
+  elapsedMs: number
+}
+```
+
+### Search Integration
+
+`SearchPanel` component provides the search UI:
+- Mode selector (keyword/semantic/hybrid)
+- Real-time results as user types
+- Click result to open note in editor
+- Shows relevance score and snippet
+
+### Indexing
+
+Managed by `useIndexing` hook:
+- Checks index status on vault load
+- Two-phase indexing: scanning (parse files) → embedding (generate vectors)
+- Progress streamed via Tauri events
+- Incremental updates after git sync
+- Metadata persisted in `.laputa-index.json`
+
+## Vault Management
+
+### Vault Switching
+
+`useVaultSwitcher` hook manages multiple vaults:
+- Persists vault list to `~/.config/com.laputa.app/vaults.json`
+- Switching closes all tabs and resets sidebar
+- Supports adding, removing, hiding/restoring vaults
+- Default vault: Getting Started demo vault
+
+### Vault Config
+
+Per-vault settings stored in `config/ui.config.md`:
+- Editable as a normal note (YAML frontmatter)
+- Managed by `useVaultConfig` hook and `vaultConfigStore`
+- Settings: zoom, view mode, tag colors, status colors, property display modes
+- One-time migration from localStorage (`configMigration.ts`)
+
+### Getting Started / Onboarding
+
+`useOnboarding` hook detects first launch:
+- If vault path doesn't exist → show `WelcomeScreen`
+- User can create Getting Started vault or open existing folder
+- Welcome state tracked in localStorage (`laputa_welcome_dismissed`)
+
+### GitHub Integration
+
+Device Authorization Flow for GitHub-backed vaults:
+- `GitHubDeviceFlow` component handles OAuth
+- `GitHubVaultModal` for cloning existing repos or creating new ones
+- Token persisted in app settings for future git operations
+- `SettingsPanel` shows connection status with disconnect option
+
+## Settings
+
+App-level settings persisted at `~/.config/com.laputa.app/settings.json`:
+
+```typescript
+interface Settings {
+  anthropic_key: string | null
+  openai_key: string | null
+  google_key: string | null
+  github_token: string | null
+  github_username: string | null
+  auto_pull_interval_minutes: number | null
+}
+```
+
+Managed by `useSettings` hook and `SettingsPanel` component.

docs/ARCHITECTURE.md

@@ -9,46 +9,58 @@ Laputa is a personal knowledge and life management desktop app. It reads a vault
 | Desktop shell | Tauri v2 | 2.10.0 |
 | Frontend | React + TypeScript | React 19, TS 5.9 |
 | Editor | BlockNote | 0.46.2 |
+| Raw editor | CodeMirror 6 | - |
 | Styling | Tailwind CSS v4 + CSS variables | 4.1.18 |
 | UI primitives | Radix UI + shadcn/ui | - |
 | Icons | Phosphor Icons + Lucide | - |
 | Build | Vite | 7.3.1 |
 | Backend language | Rust (edition 2021) | 1.77.2 |
 | Frontmatter parsing | gray_matter | 0.2 |
-| AI | Anthropic Claude API (Haiku 3.5 default) | - |
+| AI (in-app chat) | Anthropic Claude API (Haiku 3.5 default) | - |
+| AI (agent panel) | Claude CLI subprocess (streaming NDJSON) | - |
+| Search | qmd (keyword + semantic + hybrid) | - |
 | MCP | @modelcontextprotocol/sdk | 1.0 |
-| Tests | Vitest (unit), Playwright (E2E), cargo test (Rust) | - |
+| Tests | Vitest (unit), Playwright (E2E/smoke), cargo test (Rust) | - |
 | Package manager | pnpm | - |
 
 ## System Overview
 
 ```
-┌─────────────────────────────────────────────────────────────┐
-│                      Tauri v2 Window                        │
-│                                                             │
-│  ┌─────────────────── React Frontend ───────────────────┐   │
-│  │                                                      │   │
-│  │  App.tsx (orchestrator)                               │   │
-│  │    ├── Sidebar         (navigation + filters)        │   │
-│  │    ├── NoteList         (filtered note list)          │   │
-│  │    ├── Editor           (BlockNote + tabs + diff)     │   │
-│  │    │     ├── Inspector  (metadata + relationships)    │   │
-│  │    │     └── AIChatPanel (AI assistant + context)     │   │
-│  │    ├── StatusBar        (footer info)                 │   │
-│  │    └── Modals (QuickOpen, CreateNote, CommitDialog)  │   │
-│  │                                                      │   │
-│  └──────────────┬──────────┬──────────────────────────┘   │
-│                 │          │                               │
-│        Tauri IPC│     Vite Proxy / WS                     │
-│  ┌──────────────▼────┐ ┌──▼───────────────────────────┐   │
-│  │   Rust Backend    │ │   External Services          │   │
-│  │  lib.rs → 10 cmds │ │  Anthropic API (Claude)      │   │
-│  │  vault/           │ │  MCP Server (ws://9710)      │   │
-│  │  frontmatter.rs   │ │                              │   │
-│  │  git.rs           │ └──────────────────────────────┘   │
-│  │  ai_chat.rs       │                                    │
-│  └───────────────────┘                                    │
-└─────────────────────────────────────────────────────────────┘
+┌──────────────────────────────────────────────────────────────────┐
+│                       Tauri v2 Window                            │
+│                                                                  │
+│  ┌──────────────────── React Frontend ────────────────────────┐  │
+│  │                                                            │  │
+│  │  App.tsx (orchestrator)                                    │  │
+│  │    ├── WelcomeScreen     (onboarding / vault-missing)     │  │
+│  │    ├── Sidebar           (navigation + filters + types)   │  │
+│  │    ├── NoteList / PulseView (filtered list / activity)    │  │
+│  │    ├── Editor            (BlockNote + tabs + diff + raw)  │  │
+│  │    │     ├── Inspector   (metadata + relationships)       │  │
+│  │    │     ├── AIChatPanel (API-based chat)                 │  │
+│  │    │     └── AiPanel     (Claude CLI agent + tools)       │  │
+│  │    ├── SearchPanel       (keyword/semantic/hybrid search) │  │
+│  │    ├── SettingsPanel     (API keys, GitHub, zoom, theme)  │  │
+│  │    ├── StatusBar         (vault picker + sync + version)  │  │
+│  │    ├── CommandPalette    (Cmd+K fuzzy command launcher)   │  │
+│  │    └── Modals (CreateNote, CreateType, Commit, GitHub)    │  │
+│  │                                                            │  │
+│  └──────────────┬──────────┬──────────────────────────────────┘  │
+│                 │          │                                      │
+│        Tauri IPC│     Vite Proxy / WS                            │
+│  ┌──────────────▼────┐ ┌──▼────────────────────────────────┐    │
+│  │   Rust Backend    │ │   External Services               │    │
+│  │  lib.rs → 61 cmds │ │  Anthropic API (Claude chat)      │    │
+│  │  vault/           │ │  Claude CLI (agent subprocess)    │    │
+│  │  frontmatter/     │ │  MCP Server (ws://9710, 9711)     │    │
+│  │  git/             │ │  qmd (search/indexing engine)     │    │
+│  │  github/          │ │  GitHub API (OAuth, repos, clone) │    │
+│  │  theme/           │ │                                   │    │
+│  │  search.rs        │ └───────────────────────────────────┘    │
+│  │  indexing.rs      │                                           │
+│  │  claude_cli.rs    │                                           │
+│  └───────────────────┘                                           │
+└──────────────────────────────────────────────────────────────────┘
 ```
 
 ## Four-Panel Layout
@@ -57,71 +69,90 @@ Laputa is a personal knowledge and life management desktop app. It reads a vault
 ┌────────┬─────────────┬─────────────────────────┬────────────┐
 │Sidebar │ Note List   │ Editor                  │ Inspector  │
 │(250px) │ (300px)     │ (flex-1)                │ (280px)    │
-│        │             │                         │ OR         │
-│ All    │ [Search]    │ [Tab Bar]               │ AI Chat    │
-│ Favs   │ [Type Pill] │ [Breadcrumb Bar]        │            │
+│        │ OR          │                         │ OR         │
+│ All    │ Pulse View  │ [Tab Bar]               │ AI Chat    │
+│ Favs   │             │ [Breadcrumb Bar]        │ OR         │
+│ Changes│ [Search]    │                         │ AI Agent   │
+│ Pulse  │ [Sort/Filt] │ # My Note               │            │
 │        │             │                         │ Context    │
-│Projects│ Note 1      │ # My Note               │ Messages   │
-│Experim.│ Note 2      │                         │ Actions    │
-│Respons.│ Note 3      │ Content here...         │ Input      │
-│Procedu.│ ...         │                         │            │
-│People  │             │                         │            │
+│Projects│ Note 1      │ Content here...         │ Messages   │
+│Experim.│ Note 2      │ (BlockNote or Raw)      │ Actions    │
+│Respons.│ Note 3      │                         │ Input      │
+│People  │ ...         │                         │            │
 │Events  │             │                         │            │
 │Topics  │             │                         │            │
 ├────────┴─────────────┴─────────────────────────┴────────────┤
-│ StatusBar: v0.4.2 │ main │ Synced 2m ago │ 3 pending  notes│
-└─────────────────────────────────────────────────────────────┘
+│ StatusBar: v0.4.2 │ main │ Synced 2m ago │ Vault: ~/Laputa │
+└──────────────────────────────────────────────────────────────┘
 ```
 
-- **Sidebar** (150-400px, resizable): Top-level filters (All Notes, Favorites) and collapsible section groups (Projects, Experiments, Responsibilities, etc.)
-- **Note List** (200-500px, resizable): Filtered list of notes matching the sidebar selection. Shows snippets, modified dates, relationship groups, and orange dot indicators for uncommitted modified notes.
-- **Editor** (flex, fills remaining space): Tab bar (with orange modified dots on dirty tabs), breadcrumb bar with word count and modified indicator, BlockNote editor with wikilink support. Can toggle to diff view for modified files. Decomposed into focused subcomponents: `Editor` (orchestrator), `EditorContent` (breadcrumb + editor/diff views), `EditorRightPanel` (inspector/AI toggle), `SingleEditorView` (BlockNote + suggestions), with hooks `useDiffMode` and `useEditorFocus`.
-- **Inspector / AI Chat** (200-500px or 40px collapsed): Toggles between Inspector (frontmatter, relationships, backlinks, git history) and AI Chat panel. The Sparkle icon in the breadcrumb bar toggles between them.
+- **Sidebar** (150-400px, resizable): Top-level filters (All Notes, Favorites, Changes, Pulse) and collapsible type-based section groups. Each type can have a custom icon, color, sort, and visibility set via its type document in `type/`.
+- **Note List / Pulse View** (200-500px, resizable): When a section group or filter is selected, shows filtered notes with snippets, modified dates, and status indicators. When Pulse filter is active, shows `PulseView` — a chronological git activity feed grouped by day.
+- **Editor** (flex, fills remaining space): Tab bar with modified dots, breadcrumb bar with word count, BlockNote rich text editor with wikilink support. Can toggle to diff view (modified files) or raw CodeMirror view. Decomposed into `Editor` (orchestrator), `EditorContent`, `EditorRightPanel`, `SingleEditorView`, with hooks `useDiffMode`, `useEditorFocus`, `useEditorSave`, `useRawMode`.
+- **Inspector / AI Chat / AI Agent** (200-500px or 40px collapsed): Toggles between Inspector (frontmatter, relationships, backlinks, git history), AI Chat panel (API-based), and AI Agent panel (Claude CLI subprocess with tool execution). The Sparkle icon in the breadcrumb bar toggles between them.
 
 Panels are separated by `ResizeHandle` components that support drag-to-resize.
 
-## AI Chat System
+## AI System
 
-### Architecture
+Laputa has two AI interfaces with distinct architectures:
 
-The AI chat feature has three layers:
+### AI Chat (AIChatPanel)
+
+Simple chat mode — no tool execution, streaming text responses.
 
 1. **Frontend** (`AIChatPanel` + `useAIChat` hook) — UI and state management
 2. **API Proxy** (Vite middleware in dev, Rust `ai_chat` command in Tauri) — routes to Anthropic
-3. **MCP Server** (`mcp-server/`) — vault operation tools for AI assistants
+3. **Context picker** — selected notes sent as system context with token estimation
 
-### Data Flow
+### AI Agent (AiPanel)
+
+Full agent mode — spawns Claude CLI as a subprocess with tool access and MCP vault integration.
+
+1. **Frontend** (`AiPanel` + `useAiAgent` hook) — streaming UI with reasoning blocks, tool action cards, and response display
+2. **Backend** (`claude_cli.rs`) — spawns `claude` binary with `--output-format stream-json`, parses NDJSON events
+3. **MCP Integration** — passes vault MCP config via `--mcp-config` flag so the agent can search, read, and modify vault notes
+
+#### Agent Event Flow
 
 ```
-User types message in AIChatPanel
-  → useAIChat.sendMessage(text)
-    → buildSystemPrompt(contextNotes, allContent, model)
-      → Assembles selected notes as system context
-      → Estimates tokens, truncates if needed
-    → streamChat(messages, systemPrompt, model, callbacks)
-      → POST /api/ai/chat (Vite proxy → Anthropic API)
-      → SSE stream parsed, chunks dispatched to onChunk callback
-      → UI updates in real-time as tokens arrive
-    → On completion: message added to conversation history
+User sends message in AiPanel
+  → useAiAgent.sendMessage(text, references)
+    → buildContextSnapshot(activeNote, linkedNotes, openTabs)
+    → invoke('stream_claude_agent', { message, systemPrompt, vaultPath })
+      → Rust spawns: claude -p <msg> --output-format stream-json --mcp-config <json>
+      → NDJSON lines parsed into ClaudeStreamEvent variants:
+          Init, TextDelta, ThinkingDelta, ToolStart, ToolDone, Result, Error, Done
+      → Events emitted via Tauri: app_handle.emit("claude-agent-stream", &event)
+    → Frontend listener routes events:
+        onText → accumulate response (revealed on Done)
+        onThinking → show reasoning block (collapsed on first text)
+        onToolStart → add AiActionCard with spinner
+        onToolDone → update card with output
+        onDone → reveal full response, detect file operations
 ```
 
-### Context Picker
+#### File Operation Detection
 
-The context picker controls which notes are sent to the AI as context:
+When the agent writes or edits vault files, `useAiAgent` detects this from tool inputs (Write/Edit tool JSON) and calls `onFileCreated` or `onFileModified` callbacks to trigger vault reload.
 
-- **Current note** is auto-added when the panel opens
-- **Add button** opens a search dropdown to select additional notes
-- **Token estimation** shows approximate context size (~4 chars/token)
-- **Truncation** kicks in when context exceeds 60% of model limit (108k tokens)
-- Context pills show selected notes with remove buttons
+### Context Building
 
-### API Key Management
+Both AI modes use context from the active note and linked entries. The agent panel (`ai-context.ts`) builds a structured JSON snapshot:
 
-- Stored in `localStorage` under key `laputa:anthropic-api-key`
-- Configurable via the key icon in the AI Chat header
-- When no key is set, falls back to mock responses for testing
+```json
+{
+  "activeNote": { "path", "title", "type", "frontmatter", "content" },
+  "linkedNotes": [{ "path", "title", "content" }],
+  "openTabs": [{ "title", "snippet" }],
+  "vaultMetadata": { "noteTypes", "stats", "filter" },
+  "references": [{ "title", "path", "type" }]
+}
+```
 
-### Models
+Token budget: 60% of 180k context limit (~108k tokens max). Active note gets priority, then linked notes, then truncation.
+
+### Models (Chat mode)
 
 | Model | ID | Use case |
 |-------|----|----------|
@@ -129,11 +160,17 @@ The context picker controls which notes are sent to the AI as context:
 | Sonnet 4 | `claude-sonnet-4-20250514` | Balanced |
 | Opus 4 | `claude-opus-4-20250514` | Most capable |
 
-### MCP Server
+### API Key Management
+
+- Stored in app settings (`~/.config/com.laputa.app/settings.json`) under `anthropic_key`
+- Configurable via Settings panel (also supports `openai_key`, `google_key`)
+- Claude CLI (agent mode) uses its own authentication — no API key needed
+
+## MCP Server
 
 The MCP server (`mcp-server/`) exposes vault operations as tools for AI assistants (Claude Code, Cursor, or any MCP-compatible client).
 
-#### Tool Surface (14 tools)
+### Tool Surface (14 tools)
 
 | Tool | Params | Description |
 |------|--------|-------------|
@@ -146,30 +183,28 @@ The MCP server (`mcp-server/`) exposes vault operations as tools for AI assistan
 | `delete_note` | `path` | Delete a note file from the vault |
 | `link_notes` | `source_path, property, target_title` | Add a target to an array property in frontmatter |
 | `list_notes` | `[type_filter], [sort]` | List all notes, optionally filtered by type |
-| `vault_context` | — | Get vault summary: entity types + 20 recent notes |
+| `vault_context` | — | Get vault summary: entity types + 20 recent notes + configFiles |
 | `ui_open_note` | `path` | Open a note in the Laputa UI editor |
 | `ui_open_tab` | `path` | Open a note in a new UI tab |
 | `ui_highlight` | `element, [path]` | Highlight a UI element (editor, tab, properties, notelist) |
 | `ui_set_filter` | `type` | Set the sidebar filter to a specific type |
 
-#### Transports
+### Transports
 
 - **stdio** — standard MCP transport for Claude Code / Cursor (`node mcp-server/index.js`)
 - **WebSocket** — live bridge for Laputa app integration:
   - Port **9710**: Tool bridge — AI/Claude clients call vault tools here
   - Port **9711**: UI bridge — Frontend listens for UI action broadcasts from MCP tools
 
-#### Auto-Registration
+### Auto-Registration
 
 On app startup, Laputa automatically registers itself as an MCP server in:
 - `~/.claude/mcp.json` (Claude Code)
 - `~/.cursor/mcp.json` (Cursor)
 
-The registration is non-destructive (additive — preserves other MCP servers) and uses `upsert` semantics. The entry points to `mcp-server/index.js` with the active vault path as `VAULT_PATH` env var.
+Registration is non-destructive (additive, preserves other servers) and uses `upsert` semantics. The `useMcpStatus` hook tracks registration state (`checking | installed | not_installed | no_claude_cli`).
 
-Registration also runs from the frontend via the `useMcpRegistration` hook and `register_mcp_tools` Tauri command, ensuring the config stays up-to-date when the vault path changes.
-
-#### Architecture
+### Architecture
 
 ```
 ┌─────────────────────────────────────────────────────┐
@@ -200,16 +235,16 @@ The WebSocket bridge enables real-time vault operations from both the frontend a
 
 ```
 Frontend (useMcpBridge) ←→ ws://localhost:9710 ←→ ws-bridge.js ←→ vault.js
-MCP stdio tools         ←→ ws://localhost:9711 ←→ Frontend UI actions
+MCP stdio tools         ←→ ws://localhost:9711 ←→ Frontend UI actions (useAiActivity)
 ```
 
 **Tool bridge protocol** (port 9710):
 - Request: `{ "id": "req-1", "tool": "search_notes", "args": { "query": "test" } }`
 - Response: `{ "id": "req-1", "result": { ... } }`
-- Error: `{ "id": "req-1", "error": "message" }`
 
 **UI bridge protocol** (port 9711):
 - Broadcast: `{ "type": "ui_action", "action": "open_note", "path": "..." }`
+- `useAiActivity` hook receives these and applies them (highlight with 800ms feedback, open note, set filter, etc.)
 
 ### Rust MCP Module
 
@@ -223,29 +258,132 @@ MCP stdio tools         ←→ ws://localhost:9711 ←→ Frontend UI actions
 
 The `WsBridgeChild` state wrapper in `lib.rs` ensures the bridge process is killed on app exit via `RunEvent::Exit` handler.
 
-### Rust Backend (Tauri)
+## Search & Indexing
 
-The `ai_chat` Tauri command (`src-tauri/src/ai_chat.rs`) provides a non-streaming alternative:
-- Uses `reqwest` to call the Anthropic Messages API directly
-- API key from `ANTHROPIC_API_KEY` environment variable
-- Returns full response (not streamed)
-- Used in production Tauri builds where Vite proxy is unavailable
+### Search Engine
 
-### Files
+Search uses the external `qmd` binary (semantic search engine) with three modes:
 
-| File | Purpose |
-|------|---------|
-| `src/components/AIChatPanel.tsx` | Main UI: context bar, messages, input, quick actions |
-| `src/hooks/useAIChat.ts` | Chat state: messages, streaming, send/retry/clear |
-| `src/hooks/useMcpBridge.ts` | WebSocket client for MCP vault tool calls |
-| `src/hooks/useMcpRegistration.ts` | Auto-registers Laputa MCP on vault load |
-| `src/utils/ai-chat.ts` | API client, token estimation, context builder |
-| `src-tauri/src/ai_chat.rs` | Rust Anthropic API client (non-streaming) |
-| `src-tauri/src/mcp.rs` | MCP server spawning + config registration |
-| `mcp-server/index.js` | MCP server entry (stdio transport, 14 tools) |
-| `mcp-server/vault.js` | Vault file operations (9 functions) |
-| `mcp-server/ws-bridge.js` | WebSocket bridge server (tool + UI bridges) |
-| `mcp-server/test.js` | 26 unit tests for all vault.js functions |
+| Mode | Command | Description |
+|------|---------|-------------|
+| `keyword` | `qmd search` | Term matching (default) |
+| `semantic` | `qmd vsearch` | Vector similarity search |
+| `hybrid` | `qmd query` | Combined keyword + semantic |
+
+### Indexing Flow
+
+```
+Vault opened
+  → check_index_status() → parse qmd status output
+  → if stale or missing:
+    → start_indexing() (two phases):
+        Phase 1 (Scanning): qmd update — scan all .md files
+        Phase 2 (Embedding): qmd embed — generate vector embeddings
+    → Progress streamed via Tauri "indexing-progress" event
+    → Metadata saved to .laputa-index.json (last_indexed_commit, timestamp)
+  → run_incremental_update() for subsequent changes
+```
+
+Embedding failure is non-fatal — keyword search still works.
+
+### qmd Binary Resolution
+
+1. Bundled macOS app resource: `<app>/Contents/Resources/qmd/qmd`
+2. Dev mode: `CARGO_MANIFEST_DIR/resources/qmd/qmd`
+3. System locations: `~/.bun/bin/qmd`, `/usr/local/bin/qmd`, `/opt/homebrew/bin/qmd`
+4. PATH lookup via `which qmd`
+5. Auto-install via `bun install -g qmd` if missing
+
+## Vault Cache System
+
+The vault cache (`src-tauri/src/vault/cache.rs`) accelerates vault scanning using git-based incremental updates.
+
+### Cache File
+
+`.laputa-cache.json` at vault root. Stores: vault path, git HEAD commit hash, all VaultEntry objects. Version: v5 (bumped on VaultEntry field changes to force full rescan).
+
+### Three Cache Strategies
+
+1. **Same Commit (Cache Hit)**: Git HEAD matches cached hash → only re-parse uncommitted changed files via `git status --porcelain`
+2. **Different Commit (Incremental Update)**: Uses `git diff <old>..<new> --name-only` to find changed files + uncommitted changes → selective re-parse
+3. **No Cache / Corrupt Cache (Full Scan)**: Recursive `walkdir` of all `.md` files → full parse
+
+Cache auto-excludes itself from git via `.git/info/exclude`.
+
+## Theme System
+
+See [THEMING.md](./THEMING.md) for the full theme system documentation.
+
+### Two-Layer Architecture
+
+1. **Global CSS variables** (`src/index.css`): App-wide colors, borders, backgrounds. Bridged to Tailwind v4 via `@theme inline`.
+2. **Editor theme** (`src/theme.json`): BlockNote-specific typography. Flattened to CSS vars by `useEditorTheme`.
+
+### Vault-Based Themes
+
+Themes are markdown notes in the `theme/` folder with `Is A: Theme` frontmatter. Each frontmatter property becomes a CSS variable. Managed by `useThemeManager` hook and the `src-tauri/src/theme/` Rust module (create, seed, defaults).
+
+- **Vault settings**: `.laputa/settings.json` stores the active theme reference
+- **Legacy support**: `_themes/*.json` files still supported for backward compatibility
+- **Built-in themes**: Default (light), Dark, Minimal — auto-seeded on vault open
+- **Live preview**: Re-applies when the active theme note is saved
+
+## Vault Management
+
+### Vault List
+
+Persisted at `~/.config/com.laputa.app/vaults.json`:
+```json
+{
+  "vaults": [{ "label": "My Vault", "path": "/path/to/vault" }],
+  "active_vault": "/path/to/vault",
+  "hidden_defaults": []
+}
+```
+
+Managed by `useVaultSwitcher` hook. Switching vaults closes all tabs and resets sidebar.
+
+### Vault Config
+
+Per-vault UI settings stored in `config/ui.config.md` (YAML frontmatter in a markdown note):
+- `zoom`: Float zoom level (0.8–1.5)
+- `view_mode`: "all" | "editor-list" | "editor-only"
+- `tag_colors`, `status_colors`: Custom color overrides
+- `property_display_modes`: Property display preferences
+
+### Getting Started Vault
+
+On first launch, `useOnboarding` checks if the default vault exists. If not, shows `WelcomeScreen` with two options:
+- **Create Getting Started vault** → calls `create_getting_started_vault()` Tauri command
+- **Open an existing folder** → system file picker
+
+### GitHub OAuth Integration
+
+Implements GitHub Device Authorization Flow for cloning/creating GitHub-backed vaults.
+
+**Flow:**
+1. User clicks "Login with GitHub" in Settings panel
+2. `github_device_flow_start()` returns a user code + verification URL
+3. User authorizes at `github.com/login/device`
+4. App polls `github_device_flow_poll()` until authorized
+5. Token stored in `~/.config/com.laputa.app/settings.json`
+
+**Vault operations:**
+- `GitHubVaultModal`: Clone existing repo or create new private/public repo
+- `clone_repo()`: Clones with token-injected HTTPS URL
+- Token persists for future git push/pull operations
+
+## Pulse View
+
+`PulseView` is a git activity feed that replaces the NoteList when the Pulse filter is selected.
+
+- Groups commits by day ("Today", "Yesterday", or full date)
+- Shows commit message, short hash, timestamp, and changed files
+- Files have status icons (added/modified/deleted) and are clickable to open in editor
+- Links to GitHub commits when `githubUrl` is available
+- Infinite scroll pagination (20 commits per page) via Intersection Observer
+
+Backend: `get_vault_pulse` Tauri command parses `git log` with `--name-status`.
 
 ## Data Flow
 
@@ -253,93 +391,201 @@ The `ai_chat` Tauri command (`src-tauri/src/ai_chat.rs`) provides a non-streamin
 
 ```
 1. Tauri setup:
-   a. run_startup_tasks() → purge trash, migrate frontmatter, register MCP config
+   a. run_startup_tasks() → purge trash, migrate frontmatter, seed themes, migrate AGENTS.md, seed config files, register MCP
    b. spawn_ws_bridge() → start MCP WebSocket bridge (ports 9710, 9711)
 2. App mounts
-3. useVaultLoader fires:
-   a. isTauri() ? invoke('list_vault') : mockInvoke('list_vault')
-      → VaultEntry[] stored in state
-   b. Load all content (mock mode) or on-demand (Tauri mode)
-   c. invoke('get_modified_files') → ModifiedFile[] stored in state
-   d. useMcpRegistration → invoke('register_mcp_tools') → ensures MCP config current
-4. User clicks note in NoteList
-4. useNoteActions.handleSelectNote:
-   a. invoke('get_note_content') → raw markdown string
+3. useOnboarding checks vault exists → WelcomeScreen if not
+4. useVaultLoader fires:
+   a. invoke('list_vault', { path }) → scan_vault_cached() → VaultEntry[]
+   b. Load modified files via invoke('get_modified_files')
+   c. useMcpStatus → register MCP if needed
+   d. useThemeManager → load and apply active theme
+   e. useIndexing → check index status, trigger incremental update if needed
+5. User clicks note in NoteList
+6. useNoteActions.handleSelectNote:
+   a. invoke('get_note_content') → raw markdown
    b. Add tab { entry, content } to tabs state
    c. Set activeTabPath
-5. Editor renders BlockNoteTab:
+7. Editor renders BlockNoteTab:
    a. splitFrontmatter(content) → [yaml, body]
    b. preProcessWikilinks(body) → replaces [[target]] with tokens
    c. editor.tryParseMarkdownToBlocks(preprocessed)
    d. injectWikilinks(blocks) → replaces tokens with wikilink nodes
    e. editor.replaceBlocks()
-6. Inspector renders frontmatter parsed from content
+8. Inspector renders frontmatter parsed from content
 ```
 
-### Frontmatter Edit Flow
+### Auto-Save Flow
 
 ```
-User edits property in Inspector
-  → handleUpdateFrontmatter(path, key, value)
-    → Tauri: invoke('update_frontmatter') → Rust reads file, modifies YAML, writes back
-    → Mock: updateMockFrontmatter() → client-side YAML manipulation
-  → Update tab content in state
-  → Update allContent for backlink recalculation
-  → Toast: "Property updated"
+Editor content changes
+  → useEditorSave detects change (debounced)
+    → serialize BlockNote blocks → markdown
+    → postProcessWikilinks → restore [[target]] syntax
+    → invoke('save_note_content', { path, content })
+    → Update tab status indicator
 ```
 
-### Git Flow
+### Git Sync Flow
 
 ```
-User clicks Commit button → CommitDialog opens
-  → handleCommitPush(message)
-    → invoke('git_commit') → git add -A && git commit -m "..."
-    → invoke('git_push') → git push
+useAutoSync (configurable interval, default from settings):
+  → invoke('git_pull') → GitPullResult
+    → if conflicts → ConflictResolverModal
+    → if fast-forward → reload vault
+  → invoke('git_push') → GitPushResult
+
+Manual commit:
+  → CommitDialog → invoke('git_commit', { message })
+    → invoke('git_push')
     → Reload modified files
-    → Toast: "Committed and pushed"
 ```
 
 ## Vault Module Structure
 
 The vault backend (`src-tauri/src/vault/`) is split into focused submodules:
 
-| File | Purpose | CodeScene Health |
-|------|---------|-----------------|
-| `mod.rs` | Core types (`VaultEntry`, `Frontmatter`), `parse_md_file`, `scan_vault`, relationship extraction | 10.0 |
-| `parsing.rs` | Text processing: snippet extraction, markdown stripping, ISO date parsing, `extract_title` | 9.68 |
-| `cache.rs` | Git-based incremental vault caching (`scan_vault_cached`), git helpers | 9.68 |
-| `trash.rs` | `purge_trash` — deletes trashed notes older than 30 days | 9.38 |
-| `rename.rs` | `rename_note` — renames files and updates wikilinks across the vault | 9.68 |
-| `image.rs` | `save_image` — saves base64-encoded attachments with sanitized filenames | 10.0 |
+| File | Purpose |
+|------|---------|
+| `mod.rs` | Core types (`VaultEntry`, `Frontmatter`), `parse_md_file`, `scan_vault`, relationship/link extraction |
+| `parsing.rs` | Text processing: snippet extraction, markdown stripping, ISO date parsing, `extract_title` |
+| `cache.rs` | Git-based incremental vault caching (`scan_vault_cached`), git helpers |
+| `trash.rs` | `purge_trash` — deletes trashed notes older than 30 days |
+| `rename.rs` | `rename_note` — renames files and updates wikilinks across the vault |
+| `image.rs` | `save_image` — saves base64-encoded attachments with sanitized filenames |
+| `migration.rs` | Frontmatter migration utilities |
+| `config_seed.rs` | Seeds `config/` folder, migrates `AGENTS.md`, repairs missing config files |
+| `getting_started.rs` | Creates the Getting Started demo vault |
 
-Public API (re-exported from `mod.rs`): `scan_vault_cached`, `save_image`, `rename_note`, `RenameResult`, `purge_trash`, `get_note_content`, `parse_md_file`, `VaultEntry`.
+## Rust Backend Modules
 
-## Tauri IPC Commands
+| Module | Purpose |
+|--------|---------|
+| `vault/` | Vault scanning, caching, parsing, trash, rename, image, migration |
+| `frontmatter/` | YAML frontmatter read/write (`mod.rs`, `yaml.rs`, `ops.rs`) |
+| `git/` | Git operations (`commit.rs`, `status.rs`, `history.rs`, `conflict.rs`, `remote.rs`, `pulse.rs`) |
+| `github/` | GitHub OAuth + API (`auth.rs`, `api.rs`, `clone.rs`) |
+| `theme/` | Theme management (`mod.rs`, `create.rs`, `defaults.rs`, `seed.rs`) |
+| `search.rs` | qmd search integration (keyword/semantic/hybrid) |
+| `indexing.rs` | qmd indexing with progress streaming |
+| `claude_cli.rs` | Claude CLI subprocess spawning + NDJSON stream parsing |
+| `ai_chat.rs` | Direct Anthropic API client (non-streaming, for Tauri builds) |
+| `mcp.rs` | MCP server spawning + config registration |
+| `commands.rs` | All 61 Tauri command handlers |
+| `settings.rs` | App settings persistence |
+| `vault_config.rs` | Per-vault UI config |
+| `vault_list.rs` | Vault list persistence |
+| `menu.rs` | Native macOS menu bar |
 
-All commands are defined in `src-tauri/src/lib.rs` and registered via `tauri::generate_handler![]`.
+## Tauri IPC Commands (61 total)
 
-| Command | Params | Returns | Backend function |
-|---------|--------|---------|-----------------|
-| `list_vault` | `path` | `Vec<VaultEntry>` | `vault::scan_vault()` |
-| `get_note_content` | `path` | `String` | `vault::get_note_content()` |
-| `update_frontmatter` | `path, key, value` | `String` (updated content) | `frontmatter::with_frontmatter()` |
-| `delete_frontmatter_property` | `path, key` | `String` (updated content) | `frontmatter::with_frontmatter()` |
-| `get_file_history` | `vault_path, path` | `Vec<GitCommit>` | `git::get_file_history()` |
-| `get_modified_files` | `vault_path` | `Vec<ModifiedFile>` | `git::get_modified_files()` |
-| `get_file_diff` | `vault_path, path` | `String` (unified diff) | `git::get_file_diff()` |
-| `git_commit` | `vault_path, message` | `String` | `git::git_commit()` |
-| `git_push` | `vault_path` | `String` | `git::git_push()` |
-| `ai_chat` | `request: AiChatRequest` | `AiChatResponse` | `ai_chat::send_chat()` |
-| `register_mcp_tools` | `vault_path` | `String` ("registered" or "updated") | `mcp::register_mcp()` |
+### Vault Operations
 
-All commands return `Result<T, String>`. Errors are serialized as JSON error objects to the frontend.
+| Command | Description |
+|---------|-------------|
+| `list_vault` | Scan vault (cached) → `Vec<VaultEntry>` |
+| `get_note_content` | Read note file content |
+| `save_note_content` | Write note content to disk |
+| `delete_note` | Move note to trash |
+| `rename_note` | Rename note + update cross-vault wikilinks |
+| `batch_archive_notes` | Archive multiple notes |
+| `batch_trash_notes` | Trash multiple notes |
+| `purge_trash` | Delete notes trashed >30 days ago |
+| `check_vault_exists` | Check if vault path exists |
+| `create_getting_started_vault` | Bootstrap demo vault |
+
+### Frontmatter
+
+| Command | Description |
+|---------|-------------|
+| `update_frontmatter` | Update a frontmatter property |
+| `delete_frontmatter_property` | Remove a frontmatter property |
+
+### Git
+
+| Command | Description |
+|---------|-------------|
+| `git_commit` | Stage all + commit |
+| `git_pull` | Pull from remote |
+| `git_push` | Push to remote |
+| `git_resolve_conflict` | Resolve a merge conflict |
+| `git_commit_conflict_resolution` | Commit conflict resolution |
+| `get_file_history` | Last N commits for a file |
+| `get_modified_files` | `git status` filtered to .md |
+| `get_file_diff` | Unified diff for a file |
+| `get_file_diff_at_commit` | Diff at a specific commit |
+| `get_conflict_files` | List conflicted files |
+| `get_conflict_mode` | Get conflict resolution mode |
+| `get_vault_pulse` | Git activity feed (paginated) |
+| `get_last_commit_info` | Latest commit metadata |
+
+### GitHub
+
+| Command | Description |
+|---------|-------------|
+| `github_device_flow_start` | Begin OAuth device flow |
+| `github_device_flow_poll` | Poll for authorization |
+| `github_get_user` | Get authenticated user info |
+| `github_list_repos` | List user's repos |
+| `github_create_repo` | Create new repo |
+| `clone_repo` | Clone repo with token auth |
+
+### Search & Indexing
+
+| Command | Description |
+|---------|-------------|
+| `search_vault` | Search via qmd (keyword/semantic/hybrid) |
+| `get_index_status` | Check qmd index state |
+| `start_indexing` | Full index with progress streaming |
+| `trigger_incremental_index` | Incremental index update |
+
+### Theme
+
+| Command | Description |
+|---------|-------------|
+| `list_themes` | List all themes (legacy JSON) |
+| `get_theme` | Read a theme file |
+| `get_vault_settings` | Read `.laputa/settings.json` |
+| `save_vault_settings` | Write vault settings |
+| `set_active_theme` | Set active theme ID |
+| `create_theme` | Create JSON theme from template |
+| `create_vault_theme` | Create markdown theme note |
+| `ensure_vault_themes` | Seed default themes if missing |
+| `restore_default_themes` | Restore all default themes |
+| `repair_vault` | Restore default themes + missing config files |
+
+### AI & MCP
+
+| Command | Description |
+|---------|-------------|
+| `ai_chat` | Direct Anthropic API call (non-streaming) |
+| `stream_claude_chat` | Claude CLI chat mode (streaming) |
+| `stream_claude_agent` | Claude CLI agent mode (streaming + tools) |
+| `check_claude_cli` | Check if Claude CLI is available |
+| `register_mcp_tools` | Register MCP in Claude/Cursor config |
+| `check_mcp_status` | Check MCP registration state |
+
+### Settings & Config
+
+| Command | Description |
+|---------|-------------|
+| `get_settings` | Load app settings |
+| `save_settings` | Save app settings |
+| `load_vault_list` | Load vault list |
+| `save_vault_list` | Save vault list |
+| `get_vault_config` | Load per-vault UI config |
+| `save_vault_config` | Save per-vault UI config |
+| `get_default_vault_path` | Get default vault path |
+| `get_build_number` | Get app build number |
+| `save_image` | Save base64 image to vault |
+| `copy_image_to_vault` | Copy image file to vault |
+| `update_menu_state` | Update native menu checkmarks |
 
 ## Mock Layer
 
-When running outside Tauri (browser at `localhost:5201`), `src/mock-tauri.ts` provides a transparent mock layer:
+When running outside Tauri (browser at `localhost:5173`), `src/mock-tauri.ts` provides a transparent mock layer:
 
 ```typescript
-// In hooks, the pattern is always:
 if (isTauri()) {
   result = await invoke<T>('command_name', { args })
 } else {
@@ -347,14 +593,7 @@ if (isTauri()) {
 }
 ```
 
-The mock layer includes:
-- **15 sample entries** across all entity types (Project, Responsibility, Procedure, Experiment, Note, Person, Event, Topic, Essay)
-- **Full markdown content** with realistic frontmatter for each entry
-- **Mock git history, modified files, and diff output**
-- **Mock AI chat responses** with context-aware answers (summarize, expand, grammar)
-- `addMockEntry()` and `updateMockContent()` for runtime updates
-
-This means the entire UI can be developed and tested in Chrome without the Rust backend.
+The mock layer includes sample entries across all entity types, full markdown content with realistic frontmatter, mock git history, mock AI responses, and mock pulse commits.
 
 ## State Management
 
@@ -362,11 +601,18 @@ No Redux or global context. State lives in the root `App.tsx` and custom hooks:
 
 | State owner | State | Purpose |
 |-------------|-------|---------|
-| `App.tsx` | `selection`, panel widths, dialog visibility, toast, `showAIChat` | UI state |
+| `App.tsx` | `selection`, panel widths, dialog visibility, toast, view mode | UI state |
 | `useVaultLoader` | `entries`, `allContent`, `modifiedFiles` | Vault data |
 | `useNoteActions` | `tabs`, `activeTabPath` | Open tabs and note operations |
-| `useAIChat` | `messages`, `isStreaming`, `streamingContent` | AI conversation state |
-| `useMcpBridge` | `connected`, tool methods | MCP WebSocket connection |
+| `useTabManagement` | Tab ordering, pinning, swapping | Tab lifecycle |
+| `useVaultSwitcher` | `vaultPath`, `extraVaults` | Vault switching |
+| `useThemeManager` | `themes`, `activeThemeId`, `isDark` | Theme state |
+| `useAIChat` | `messages`, `isStreaming` | AI chat conversation |
+| `useAiAgent` | `messages`, `status`, tool actions | AI agent conversation |
+| `useAutoSync` | Sync interval, pull/push state | Git auto-sync |
+| `useIndexing` | Index status, progress | Search indexing |
+| `useSettings` | App settings (API keys, GitHub token) | Persistent settings |
+| `useVaultConfig` | Per-vault UI preferences | Vault-specific config |
 
 Data flows unidirectionally: `App` passes data and callbacks as props to child components. No child-to-child communication — everything goes through `App`.
 
@@ -374,10 +620,14 @@ Data flows unidirectionally: `App` passes data and callbacks as props to child c
 
 | Shortcut | Action |
 |----------|--------|
-| Cmd+P | Open Quick Open palette |
-| Cmd+N | Open Create Note dialog |
-| Cmd+S | Show "Saved" toast |
+| Cmd+K | Open command palette |
+| Cmd+P | Open quick open palette |
+| Cmd+N | Create new note |
+| Cmd+S | Save current note |
 | Cmd+W | Close active tab |
+| Cmd+Z / Cmd+Shift+Z | Undo / Redo |
+| Cmd+1–9 | Switch to tab N |
+| Cmd+[ / Cmd+] | Navigate back / forward |
 | `[[` in editor | Open wikilink suggestion menu |
 
 ## Auto-Release & In-App Updates
@@ -399,47 +649,22 @@ push to main
       → generate latest.json (per-arch + universal platform entries)
       → publish GitHub Release with all assets + auto-generated notes
   → pages job:
-      → fetch all releases via gh api
       → build static HTML release history page
-      → deploy to gh-pages via peaceiris/actions-gh-pages
+      → deploy to gh-pages
 ```
 
 ### Versioning
 
-Format: `0.YYYYMMDD.GITHUB_RUN_NUMBER` (e.g. `0.20260223.42`). The `0.` prefix keeps it SemVer-compatible while making it clear these are date-based auto-releases. The version is stamped into both `tauri.conf.json` and `Cargo.toml` dynamically in the workflow.
+Format: `0.YYYYMMDD.GITHUB_RUN_NUMBER` (e.g. `0.20260223.42`). Stamped into `tauri.conf.json` and `Cargo.toml` dynamically.
 
-### Universal Binary
-
-macOS builds produce both `aarch64-apple-darwin` and `x86_64-apple-darwin` in parallel. The release job merges them with `lipo` — copying the arm64 `.app` as the base and replacing only the main executable with a universal fat binary. The per-arch updater tarballs are also uploaded so the Tauri updater downloads only the relevant architecture (smaller download).
-
-### Updater Endpoint
-
-The Tauri updater plugin is configured to fetch:
-```
-https://github.com/refactoringhq/laputa-app/releases/latest/download/latest.json
-```
-
-This JSON manifest contains `version`, `pub_date`, `notes`, and per-platform entries (`darwin-aarch64`, `darwin-x86_64`) with `url` and `signature` fields. The updater compares the manifest version against the running app version, downloads the matching platform artifact, verifies the signature, and installs it.
-
-### In-App Update UI
+### In-App Updates
 
 ```
 App startup (3s delay)
   → useUpdater.check()
-    → idle (no update) → no UI shown
-    → available → UpdateBanner: "Laputa X.Y.Z is available" + Release Notes + Update Now + X
-      → user clicks Update Now → downloading → progress bar
-        → download complete → ready → "Restart to apply" + Restart Now button
-          → user clicks Restart → relaunch()
-    → network error / 404 → fail silently, no UI
+    → idle (no update) → no UI
+    → available → UpdateBanner with release notes + "Update Now"
+      → downloading → progress bar
+        → ready → "Restart to apply" + Restart Now
+    → network error → fail silently
 ```
-
-| Component | File | Purpose |
-|-----------|------|---------|
-| `useUpdater` | `src/hooks/useUpdater.ts` | State machine: idle → available → downloading → ready → error |
-| `UpdateBanner` | `src/components/UpdateBanner.tsx` | Top-of-app notification bar |
-| `restartApp` | `src/hooks/useUpdater.ts` | Calls `@tauri-apps/plugin-process` relaunch |
-
-### GitHub Pages
-
-Release history site at `https://refactoringhq.github.io/laputa-app/`. Auto-updated by the workflow after each release. The page loads `releases.json` (deployed alongside) and renders each release with date, notes, and `.dmg` download links. Linked from the in-app "Release Notes" button.

docs/GETTING-STARTED.md

@@ -7,6 +7,7 @@ How to navigate the codebase, run the app, and find what you need.
 - **Node.js** 18+ and **pnpm**
 - **Rust** 1.77.2+ (for the Tauri backend)
 - **git** CLI (required by the git integration features)
+- **qmd** (optional — for search indexing; auto-installed if missing)
 
 ## Quick Start
 
@@ -24,7 +25,7 @@ pnpm tauri dev
 # Run tests
 pnpm test          # Vitest unit tests
 cargo test         # Rust tests (from src-tauri/)
-pnpm test:e2e      # Playwright E2E tests
+pnpm playwright:smoke  # Playwright smoke tests
 ```
 
 ## Directory Structure
@@ -33,39 +34,94 @@ pnpm test:e2e      # Playwright E2E tests
 laputa-app/
 ├── src/                          # React frontend
 │   ├── main.tsx                  # Entry point (renders <App />)
-│   ├── App.tsx                   # Root component — orchestrates 4-panel layout
+│   ├── App.tsx                   # Root component — orchestrates layout + state
 │   ├── App.css                   # App shell layout styles
-│   ├── types.ts                  # Shared TS types (VaultEntry, GitCommit, etc.)
+│   ├── types.ts                  # Shared TS types (VaultEntry, Settings, etc.)
 │   ├── mock-tauri.ts             # Mock Tauri layer for browser testing
 │   ├── theme.json                # Editor theme configuration
 │   ├── index.css                 # Global CSS variables + Tailwind setup
 │   │
-│   ├── components/               # UI components
-│   │   ├── Sidebar.tsx           # Left panel: filters + section groups
+│   ├── components/               # UI components (~98 files)
+│   │   ├── Sidebar.tsx           # Left panel: filters + type groups
+│   │   ├── SidebarParts.tsx      # Sidebar subcomponents
 │   │   ├── NoteList.tsx          # Second panel: filtered note list
-│   │   ├── Editor.tsx            # Third panel: tabs + BlockNote + diff
+│   │   ├── NoteItem.tsx          # Individual note item
+│   │   ├── PulseView.tsx         # Git activity feed (replaces NoteList)
+│   │   ├── Editor.tsx            # Third panel: tabs + editor orchestration
+│   │   ├── EditorContent.tsx     # Editor content area
+│   │   ├── EditorRightPanel.tsx  # Right panel toggle
+│   │   ├── editorSchema.tsx      # BlockNote schema + wikilink type
+│   │   ├── RawEditorView.tsx     # CodeMirror raw editor
 │   │   ├── Inspector.tsx         # Fourth panel: metadata + relationships
 │   │   ├── DynamicPropertiesPanel.tsx  # Editable frontmatter properties
-│   │   ├── EditableValue.tsx     # Inline value editor component
-│   │   ├── DiffView.tsx          # Git diff viewer
-│   │   ├── ResizeHandle.tsx      # Draggable panel divider
-│   │   ├── StatusBar.tsx         # Bottom status bar
-│   │   ├── QuickOpenPalette.tsx  # Cmd+P command palette
-│   │   ├── CreateNoteDialog.tsx  # New note modal
+│   │   ├── AIChatPanel.tsx       # AI chat (API-based)
+│   │   ├── AiPanel.tsx           # AI agent (Claude CLI subprocess)
+│   │   ├── AiMessage.tsx         # Agent message display
+│   │   ├── AiActionCard.tsx      # Agent tool action cards
+│   │   ├── SearchPanel.tsx       # Search interface
+│   │   ├── SettingsPanel.tsx     # App settings
+│   │   ├── StatusBar.tsx         # Bottom bar: vault picker + sync
+│   │   ├── CommandPalette.tsx    # Cmd+K command launcher
+│   │   ├── TabBar.tsx            # Tab management
+│   │   ├── BreadcrumbBar.tsx     # Breadcrumb + word count + actions
+│   │   ├── WelcomeScreen.tsx     # Onboarding screen
+│   │   ├── GitHubVaultModal.tsx  # GitHub vault clone/create
+│   │   ├── GitHubDeviceFlow.tsx  # GitHub OAuth device flow
+│   │   ├── ThemePropertyEditor.tsx # Interactive theme editor
+│   │   ├── ConflictResolverModal.tsx # Git conflict resolution
 │   │   ├── CommitDialog.tsx      # Git commit modal
-│   │   ├── Toast.tsx             # Toast notifications
-│   │   ├── Editor.css            # Editor layout styles
-│   │   ├── EditorTheme.css       # BlockNote theme overrides
-│   │   └── ui/                   # shadcn/ui primitives (button, dialog, etc.)
+│   │   ├── CreateNoteDialog.tsx  # New note modal
+│   │   ├── CreateTypeDialog.tsx  # New type modal
+│   │   ├── UpdateBanner.tsx      # In-app update notification
+│   │   ├── inspector/            # Inspector sub-panels
+│   │   │   ├── BacklinksPanel.tsx
+│   │   │   ├── RelationshipsPanel.tsx
+│   │   │   ├── GitHistoryPanel.tsx
+│   │   │   └── ...
+│   │   └── ui/                   # shadcn/ui primitives
+│   │       ├── button.tsx, dialog.tsx, input.tsx, ...
 │   │
-│   ├── hooks/                    # Custom React hooks
-│   │   ├── useVaultLoader.ts     # Loads vault entries, git status, content
-│   │   ├── useNoteActions.ts     # Tab management, frontmatter CRUD, navigation
-│   │   └── useTheme.ts           # Flattens theme.json into CSS variables
+│   ├── hooks/                    # Custom React hooks (~87 files)
+│   │   ├── useVaultLoader.ts     # Loads vault entries + content
+│   │   ├── useVaultSwitcher.ts   # Multi-vault management
+│   │   ├── useVaultConfig.ts     # Per-vault UI settings
+│   │   ├── useNoteActions.ts     # Tab management, navigation, CRUD
+│   │   ├── useTabManagement.ts   # Tab ordering + lifecycle
+│   │   ├── useAIChat.ts          # AI chat state
+│   │   ├── useAiAgent.ts         # AI agent state + tool tracking
+│   │   ├── useAiActivity.ts      # MCP UI bridge listener
+│   │   ├── useAutoSync.ts        # Auto git pull/push
+│   │   ├── useConflictResolver.ts # Git conflict handling
+│   │   ├── useEditorSave.ts      # Auto-save with debounce
+│   │   ├── useTheme.ts           # Flatten theme.json → CSS vars
+│   │   ├── useThemeManager.ts    # Vault theme lifecycle
+│   │   ├── useIndexing.ts        # Search indexing management
+│   │   ├── useNoteSearch.ts      # Note search
+│   │   ├── useCommandRegistry.ts # Command palette registry
+│   │   ├── useAppCommands.ts     # App-level commands
+│   │   ├── useAppKeyboard.ts     # Keyboard shortcuts
+│   │   ├── useSettings.ts        # App settings
+│   │   ├── useOnboarding.ts      # First-launch flow
+│   │   ├── useCodeMirror.ts      # CodeMirror raw editor
+│   │   ├── useMcpBridge.ts       # MCP WebSocket client
+│   │   ├── useMcpStatus.ts       # MCP registration status
+│   │   ├── useUpdater.ts         # In-app updates
+│   │   └── ...
 │   │
-│   ├── utils/                    # Pure utility functions
-│   │   ├── frontmatter.ts        # TypeScript YAML frontmatter parser
-│   │   └── wikilinks.ts          # Wikilink preprocessing + word count
+│   ├── utils/                    # Pure utility functions (~48 files)
+│   │   ├── wikilinks.ts          # Wikilink preprocessing pipeline
+│   │   ├── frontmatter.ts        # TypeScript YAML parser
+│   │   ├── ai-agent.ts           # Agent stream utilities
+│   │   ├── ai-chat.ts            # Chat API client + token estimation
+│   │   ├── ai-context.ts         # Context snapshot builder
+│   │   ├── noteListHelpers.ts    # Sorting, filtering, date formatting
+│   │   ├── themeSchema.ts        # Theme editor schema builder
+│   │   ├── configMigration.ts    # localStorage → vault config migration
+│   │   ├── iconRegistry.ts       # Phosphor icon registry
+│   │   ├── propertyTypes.ts      # Property type definitions
+│   │   ├── vaultListStore.ts     # Vault list persistence
+│   │   ├── vaultConfigStore.ts   # Vault config store
+│   │   └── ...
 │   │
 │   ├── lib/
 │   │   └── utils.ts              # Tailwind merge + cn() helper
@@ -78,28 +134,58 @@ laputa-app/
 │   ├── build.rs                  # Tauri build script
 │   ├── tauri.conf.json           # Tauri app configuration
 │   ├── capabilities/             # Tauri v2 security capabilities
-│   │   └── default.json
 │   ├── src/
 │   │   ├── main.rs               # Entry point (calls lib::run())
-│   │   ├── lib.rs                # Tauri command registration (9 commands)
-│   │   ├── vault.rs              # Vault scanning + markdown parsing
-│   │   ├── frontmatter.rs        # YAML frontmatter manipulation
-│   │   └── git.rs                # Git CLI operations
+│   │   ├── lib.rs                # Tauri setup + command registration (61 commands)
+│   │   ├── commands.rs           # All Tauri command handlers
+│   │   ├── vault/                # Vault module
+│   │   │   ├── mod.rs            # Core types, parse_md_file, scan_vault
+│   │   │   ├── cache.rs          # Git-based incremental caching
+│   │   │   ├── parsing.rs        # Text processing + title extraction
+│   │   │   ├── trash.rs          # Trash auto-purge
+│   │   │   ├── rename.rs         # Rename + cross-vault wikilink update
+│   │   │   ├── image.rs          # Image attachment saving
+│   │   │   ├── migration.rs      # Frontmatter migration
+│   │   │   └── getting_started.rs # Getting Started vault creation
+│   │   ├── frontmatter/          # Frontmatter module
+│   │   │   ├── mod.rs, yaml.rs, ops.rs
+│   │   ├── git/                  # Git module
+│   │   │   ├── mod.rs, commit.rs, status.rs, history.rs
+│   │   │   ├── conflict.rs, remote.rs, pulse.rs
+│   │   ├── github/               # GitHub module
+│   │   │   ├── mod.rs, auth.rs, api.rs, clone.rs
+│   │   ├── theme/                # Theme module
+│   │   │   ├── mod.rs, create.rs, defaults.rs, seed.rs
+│   │   ├── search.rs             # qmd search integration
+│   │   ├── indexing.rs           # qmd indexing + progress streaming
+│   │   ├── claude_cli.rs         # Claude CLI subprocess management
+│   │   ├── ai_chat.rs            # Direct Anthropic API client
+│   │   ├── mcp.rs                # MCP server lifecycle + registration
+│   │   ├── settings.rs           # App settings persistence
+│   │   ├── vault_config.rs       # Per-vault UI config
+│   │   ├── vault_list.rs         # Vault list persistence
+│   │   └── menu.rs               # Native macOS menu bar
 │   └── icons/                    # App icons
 │
-├── e2e/                          # Playwright E2E tests
-│   ├── app.spec.ts               # App loading tests
-│   ├── core-flows.spec.ts        # Main user workflows
-│   ├── keyboard-shortcuts.spec.ts
-│   ├── quick-open.spec.ts
-│   ├── screenshot.spec.ts        # Visual regression screenshots
-│   └── ...
+├── mcp-server/                   # MCP bridge (Node.js)
+│   ├── index.js                  # MCP server entry (stdio, 14 tools)
+│   ├── vault.js                  # Vault file operations
+│   ├── ws-bridge.js              # WebSocket bridge (ports 9710, 9711)
+│   ├── test.js                   # MCP server tests
+│   └── package.json
+│
+├── e2e/                          # Playwright E2E tests (~26 specs)
+├── tests/smoke/                  # Smoke tests (~10 specs)
+├── design/                       # Per-task design files
+├── demo-vault-v2/                # Getting Started demo vault
+├── scripts/                      # Build/utility scripts
 │
 ├── package.json                  # Frontend dependencies + scripts
 ├── vite.config.ts                # Vite bundler config
 ├── tsconfig.json                 # TypeScript config
 ├── playwright.config.ts          # E2E test config
-├── CLAUDE.md                     # Project instructions for Claude
+├── ui-design.pen                 # Master design file
+├── CLAUDE.md                     # Project instructions
 └── docs/                         # This documentation
 ```
 
@@ -109,9 +195,10 @@ laputa-app/
 
 | File | Why it matters |
 |------|---------------|
-| `src/App.tsx` | The root component. Shows how the 4-panel layout is assembled and how state flows between components. |
+| `src/App.tsx` | Root component. Shows the 4-panel layout, state flow, and how all features connect. |
 | `src/types.ts` | All shared TypeScript types. Read this first to understand the data model. |
-| `src-tauri/src/lib.rs` | All 9 Tauri commands in one place. This is the frontend-backend API surface. |
+| `src-tauri/src/commands.rs` | All 61 Tauri command handlers. This is the frontend-backend API surface. |
+| `src-tauri/src/lib.rs` | Tauri setup, command registration, startup tasks, WebSocket bridge lifecycle. |
 
 ### Data layer
 
@@ -119,31 +206,55 @@ laputa-app/
 |------|---------------|
 | `src/hooks/useVaultLoader.ts` | How vault data is loaded and managed. The Tauri/mock branching pattern. |
 | `src/hooks/useNoteActions.ts` | Tab management, wikilink navigation, frontmatter CRUD. The biggest hook. |
+| `src/hooks/useVaultSwitcher.ts` | Multi-vault management, vault switching, Getting Started vault. |
 | `src/mock-tauri.ts` | Mock data for browser testing. Shows the shape of all Tauri responses. |
 
 ### Backend
 
 | File | Why it matters |
 |------|---------------|
-| `src-tauri/src/vault.rs` | Vault scanning, frontmatter parsing, entity type inference. The core backend logic. |
-| `src-tauri/src/frontmatter.rs` | YAML manipulation — how properties are updated/deleted in files. |
-| `src-tauri/src/git.rs` | All git operations. Shells out to git CLI. |
+| `src-tauri/src/vault/mod.rs` | Vault scanning, frontmatter parsing, entity type inference, relationship extraction. |
+| `src-tauri/src/vault/cache.rs` | Git-based incremental caching — how large vaults load fast. |
+| `src-tauri/src/frontmatter/ops.rs` | YAML manipulation — how properties are updated/deleted in files. |
+| `src-tauri/src/git/` | All git operations (commit, pull, push, conflicts, pulse). |
+| `src-tauri/src/github/` | GitHub OAuth device flow + repo clone/create. |
+| `src-tauri/src/search.rs` | qmd search integration (keyword/semantic/hybrid). |
+| `src-tauri/src/claude_cli.rs` | Claude CLI subprocess spawning + NDJSON stream parsing. |
 
 ### Editor
 
 | File | Why it matters |
 |------|---------------|
-| `src/components/Editor.tsx` | BlockNote setup, custom wikilink schema, tab bar, breadcrumb bar, diff toggle. |
-| `src/utils/wikilinks.ts` | The wikilink preprocessing pipeline (markdown → BlockNote blocks with wikilinks). |
-| `src/components/EditorTheme.css` | BlockNote CSS overrides for typography and styling. |
+| `src/components/Editor.tsx` | BlockNote setup, tab bar, breadcrumb bar, diff/raw toggle. |
+| `src/components/editorSchema.tsx` | Custom wikilink inline content type definition. |
+| `src/utils/wikilinks.ts` | Wikilink preprocessing pipeline (markdown ↔ BlockNote). |
+| `src/components/RawEditorView.tsx` | CodeMirror 6 raw markdown editor. |
 
-### Styling
+### AI
 
 | File | Why it matters |
 |------|---------------|
-| `src/index.css` | All CSS custom properties (colors, spacing). The design token source of truth. |
+| `src/components/AiPanel.tsx` | AI agent panel — Claude CLI with tool execution, reasoning, actions. |
+| `src/components/AIChatPanel.tsx` | AI chat panel — API-based chat without tools. |
+| `src/hooks/useAiAgent.ts` | Agent state: messages, streaming, tool tracking, file detection. |
+| `src/utils/ai-context.ts` | Context snapshot builder for AI conversations. |
+
+### Styling & Themes
+
+| File | Why it matters |
+|------|---------------|
+| `src/index.css` | All CSS custom properties. The design token source of truth. |
 | `src/theme.json` | Editor-specific theme (fonts, headings, lists, code blocks). |
-| `src/hooks/useTheme.ts` | Converts theme.json into CSS variables for the editor. |
+| `src/hooks/useThemeManager.ts` | Vault theme lifecycle (switch, create, apply, live preview). |
+| `docs/THEMING.md` | Full theme system documentation. |
+
+### Settings & Config
+
+| File | Why it matters |
+|------|---------------|
+| `src/hooks/useSettings.ts` | App settings (API keys, GitHub token, sync interval). |
+| `src/hooks/useVaultConfig.ts` | Per-vault UI preferences (zoom, view mode, colors). |
+| `src/components/SettingsPanel.tsx` | Settings UI including GitHub OAuth connection. |
 
 ## Architecture Patterns
 
@@ -169,13 +280,15 @@ No global state management (no Redux, no Context). `App.tsx` owns the state and
 
 ```typescript
 type SidebarSelection =
-  | { kind: 'filter'; filter: 'all' | 'favorites' }
+  | { kind: 'filter'; filter: SidebarFilter }
   | { kind: 'sectionGroup'; type: string }
   | { kind: 'entity'; entry: VaultEntry }
   | { kind: 'topic'; entry: VaultEntry }
 ```
 
-This pattern makes it easy to handle all selection states exhaustively.
+### Command Registry
+
+`useCommandRegistry` + `useAppCommands` build a centralized command registry. Commands are registered with labels, shortcuts, and handlers. The `CommandPalette` (Cmd+K) fuzzy-searches this registry. The native macOS menu bar also triggers commands via `useMenuEvents`.
 
 ## Running Tests
 
@@ -183,26 +296,28 @@ This pattern makes it easy to handle all selection states exhaustively.
 # Unit tests (fast, no browser)
 pnpm test
 
-# Rust tests
-cd src-tauri && cargo test
+# Unit tests with coverage (must pass ≥70%)
+pnpm test:coverage
 
-# E2E tests (requires dev server)
-pnpm test:e2e
+# Rust tests
+cargo test
+
+# Rust coverage (must pass ≥85% line coverage)
+cargo llvm-cov --manifest-path src-tauri/Cargo.toml --no-clean --fail-under-lines 85
+
+# Playwright smoke tests (requires dev server)
+BASE_URL="http://localhost:5173" pnpm playwright:smoke
 
 # Single Playwright test
-npx playwright test e2e/screenshot.spec.ts
-
-# Visual verification screenshots
-npx playwright test e2e/screenshot.spec.ts
-# Screenshots saved to test-results/
+BASE_URL="http://localhost:5173" npx playwright test tests/smoke/<slug>.spec.ts
 ```
 
 ## Common Tasks
 
 ### Add a new Tauri command
 
-1. Write the Rust function in `vault.rs`, `git.rs`, or a new module
-2. Add `#[tauri::command]` wrapper in `lib.rs`
+1. Write the Rust function in the appropriate module (`vault/`, `git/`, etc.)
+2. Add a command handler in `commands.rs`
 3. Register it in the `generate_handler![]` macro in `lib.rs`
 4. Call it from the frontend via `invoke()` in the appropriate hook
 5. Add a mock handler in `mock-tauri.ts`
@@ -217,6 +332,25 @@ npx playwright test e2e/screenshot.spec.ts
 ### Add a new entity type
 
 1. Create the folder in the vault (e.g., `~/Laputa/mytype/`)
-2. Add the folder → type mapping in `vault.rs:parse_md_file()` (the `match` on folder names)
-3. The sidebar section groups are defined as `SECTION_GROUPS` in `Sidebar.tsx` — add it there
-4. Update `CreateNoteDialog.tsx` type options if users should be able to create it
+2. Create a type document: `type/mytype.md` with `Is A: Type` frontmatter (icon, color, order, etc.)
+3. The sidebar section groups are auto-generated from type documents — no code change needed if `visible: true`
+4. Update `CreateNoteDialog.tsx` type options if users should be able to create it from the dialog
+
+### Add a command palette entry
+
+1. Register the command in `useAppCommands.ts` via the command registry
+2. Add a corresponding menu bar item in `menu.rs` for discoverability
+3. If it has a keyboard shortcut, register it in `useAppKeyboard.ts`
+
+### Add or modify a theme
+
+1. **Vault-based** (preferred): Create/edit a markdown note in `theme/` with `Is A: Theme` frontmatter
+2. **Programmatic**: Edit defaults in `src-tauri/src/theme/defaults.rs`
+3. See `docs/THEMING.md` for the full property reference
+
+### Work with the AI agent
+
+1. **Agent system prompt**: Edit `src/utils/ai-agent.ts` (inline system prompt string)
+2. **Context building**: Edit `src/utils/ai-context.ts` for what data is sent to the agent
+3. **Tool action display**: Edit `src/components/AiActionCard.tsx`
+4. **Claude CLI arguments**: Edit `src-tauri/src/claude_cli.rs` (`run_agent_stream()`)

eslint.config.js

@@ -6,7 +6,7 @@ import tseslint from 'typescript-eslint'
 import { defineConfig, globalIgnores } from 'eslint/config'
 
 export default defineConfig([
-  globalIgnores(['dist', 'coverage', 'src-tauri/resources/', 'src-tauri/target/']),
+  globalIgnores(['dist', 'coverage', 'src-tauri/resources/', 'src-tauri/target/', 'tools/']),
   {
     files: ['**/*.{ts,tsx}'],
     extends: [

mcp-server/index.js

@@ -1,21 +1,17 @@
 #!/usr/bin/env node
 /**
- * Laputa MCP Server — provides vault operation tools for AI assistants.
+ * Laputa MCP Server — lightweight vault tools for AI agents.
  *
- * Usage:
- *   VAULT_PATH=/path/to/vault node index.js
+ * The agent has full shell access (bash, read, write, edit).
+ * These MCP tools provide Laputa-specific capabilities that
+ * native tools cannot replace:
  *
- * Tools:
- *   - open_note / read_note: Read a note by path
- *   - create_note: Create a new note with title and optional frontmatter
- *   - search_notes: Search notes by title or content
- *   - append_to_note: Append text to an existing note
- *   - edit_note_frontmatter: Merge a patch into a note's YAML frontmatter
- *   - delete_note: Delete a note file
- *   - link_notes: Add a title to an array property in a note's frontmatter
- *   - list_notes: List all notes, optionally filtered by type
- *   - vault_context: Get vault types and recent notes
- *   - ui_open_note / ui_open_tab / ui_highlight / ui_set_filter: UI actions
+ *   - search_notes: full-text search across vault notes
+ *   - get_vault_context: vault structure overview (types, note count, folders)
+ *   - get_note: parsed frontmatter + content (convenience over raw cat)
+ *   - open_note: signal Laputa UI to open a note as a tab
+ *   - highlight_editor: visually highlight a UI element (editor, tab, etc.)
+ *   - refresh_vault: trigger vault rescan so new/modified files appear
  */
 import { Server } from '@modelcontextprotocol/sdk/server/index.js'
 import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js'
@@ -23,64 +19,47 @@ import {
   CallToolRequestSchema,
   ListToolsRequestSchema,
 } from '@modelcontextprotocol/sdk/types.js'
-import {
-  readNote, createNote, searchNotes, appendToNote,
-  editNoteFrontmatter, deleteNote, linkNotes, listNotes, vaultContext,
-} from './vault.js'
-import { startUiBridge } from './ws-bridge.js'
+import WebSocket from 'ws'
+import { searchNotes, getNote, vaultContext } from './vault.js'
 
 const VAULT_PATH = process.env.VAULT_PATH || process.env.HOME + '/Laputa'
 const WS_UI_PORT = parseInt(process.env.WS_UI_PORT || '9711', 10)
+const WS_UI_URL = `ws://localhost:${WS_UI_PORT}`
 
-// Start the UI bridge so stdio-based MCP tools can broadcast UI actions
-const uiBridge = startUiBridge(WS_UI_PORT)
+// Connect as a WebSocket CLIENT to the UI bridge (run by ws-bridge.js).
+// The bridge relays messages to all other clients (the React frontend).
+let uiSocket = null
+const RECONNECT_INTERVAL_MS = 3000
+
+function connectUiBridge() {
+  try {
+    const ws = new WebSocket(WS_UI_URL)
+    ws.on('open', () => {
+      uiSocket = ws
+      console.error(`[mcp] Connected to UI bridge at ${WS_UI_URL}`)
+    })
+    ws.on('close', () => {
+      uiSocket = null
+      setTimeout(connectUiBridge, RECONNECT_INTERVAL_MS)
+    })
+    ws.on('error', () => {
+      // Silent — bridge may not be running yet, will retry
+    })
+  } catch {
+    setTimeout(connectUiBridge, RECONNECT_INTERVAL_MS)
+  }
+}
+connectUiBridge()
 
 function broadcastUiAction(action, payload) {
-  const msg = JSON.stringify({ type: 'ui_action', action, ...payload })
-  for (const client of uiBridge.clients) {
-    if (client.readyState === 1) client.send(msg)
-  }
+  if (!uiSocket || uiSocket.readyState !== WebSocket.OPEN) return
+  uiSocket.send(JSON.stringify({ type: 'ui_action', action, ...payload }))
 }
 
 const TOOLS = [
-  {
-    name: 'open_note',
-    description: 'Open and read a note from the vault by its relative path',
-    inputSchema: {
-      type: 'object',
-      properties: {
-        path: { type: 'string', description: 'Relative path to the note (e.g. "project/my-project.md")' },
-      },
-      required: ['path'],
-    },
-  },
-  {
-    name: 'read_note',
-    description: 'Read the full content of a note',
-    inputSchema: {
-      type: 'object',
-      properties: {
-        path: { type: 'string', description: 'Relative path to the note' },
-      },
-      required: ['path'],
-    },
-  },
-  {
-    name: 'create_note',
-    description: 'Create a new note in the vault with a title and optional frontmatter',
-    inputSchema: {
-      type: 'object',
-      properties: {
-        path: { type: 'string', description: 'Relative path for the new note (e.g. "note/my-idea.md")' },
-        title: { type: 'string', description: 'Title of the note' },
-        is_a: { type: 'string', description: 'Entity type (Project, Note, Experiment, etc.)' },
-      },
-      required: ['path', 'title'],
-    },
-  },
   {
     name: 'search_notes',
-    description: 'Search notes in the vault by title or content',
+    description: 'Full-text search across vault notes by title or content. Returns matching paths, titles, and snippets.',
     inputSchema: {
       type: 'object',
       properties: {
@@ -91,72 +70,24 @@ const TOOLS = [
     },
   },
   {
-    name: 'append_to_note',
-    description: 'Append text to the end of an existing note',
-    inputSchema: {
-      type: 'object',
-      properties: {
-        path: { type: 'string', description: 'Relative path to the note' },
-        text: { type: 'string', description: 'Text to append' },
-      },
-      required: ['path', 'text'],
-    },
-  },
-  {
-    name: 'edit_note_frontmatter',
-    description: 'Merge a patch object into a note\'s YAML frontmatter',
-    inputSchema: {
-      type: 'object',
-      properties: {
-        path: { type: 'string', description: 'Relative path to the note' },
-        patch: { type: 'object', description: 'Key-value pairs to merge into frontmatter' },
-      },
-      required: ['path', 'patch'],
-    },
-  },
-  {
-    name: 'delete_note',
-    description: 'Delete a note file from the vault',
-    inputSchema: {
-      type: 'object',
-      properties: {
-        path: { type: 'string', description: 'Relative path to the note to delete' },
-      },
-      required: ['path'],
-    },
-  },
-  {
-    name: 'link_notes',
-    description: 'Add a target title to an array property in a note\'s frontmatter (e.g. add "Marco" to people: [])',
-    inputSchema: {
-      type: 'object',
-      properties: {
-        source_path: { type: 'string', description: 'Relative path to the source note' },
-        property: { type: 'string', description: 'Frontmatter property name (e.g. "people", "tags")' },
-        target_title: { type: 'string', description: 'Title to add to the array' },
-      },
-      required: ['source_path', 'property', 'target_title'],
-    },
-  },
-  {
-    name: 'list_notes',
-    description: 'List all notes in the vault, optionally filtered by type frontmatter field',
-    inputSchema: {
-      type: 'object',
-      properties: {
-        type_filter: { type: 'string', description: 'Filter by type frontmatter value' },
-        sort: { type: 'string', enum: ['title', 'mtime'], description: 'Sort order (default: title)' },
-      },
-    },
-  },
-  {
-    name: 'vault_context',
-    description: 'Get vault context: unique entity types and 20 most recently modified notes',
+    name: 'get_vault_context',
+    description: 'Get vault orientation: entity types, total note count, top-level folders, and 20 most recently modified notes.',
     inputSchema: { type: 'object', properties: {} },
   },
   {
-    name: 'ui_open_note',
-    description: 'Open a note in the Laputa UI editor',
+    name: 'get_note',
+    description: 'Read a note with parsed YAML frontmatter and markdown content. Returns {path, frontmatter, content}.',
+    inputSchema: {
+      type: 'object',
+      properties: {
+        path: { type: 'string', description: 'Relative path to the note (e.g. "project/my-project.md")' },
+      },
+      required: ['path'],
+    },
+  },
+  {
+    name: 'open_note',
+    description: 'Open a note in the Laputa UI as a new tab. Use after creating or editing a note so the user can see it.',
     inputSchema: {
       type: 'object',
       properties: {
@@ -166,68 +97,36 @@ const TOOLS = [
     },
   },
   {
-    name: 'ui_open_tab',
-    description: 'Open a note in a new tab in the Laputa UI',
+    name: 'highlight_editor',
+    description: 'Visually highlight a UI element in Laputa (editor, tab, properties panel, or note list). The highlight auto-clears after a short delay.',
     inputSchema: {
       type: 'object',
       properties: {
-        path: { type: 'string', description: 'Relative path to the note' },
-      },
-      required: ['path'],
-    },
-  },
-  {
-    name: 'ui_highlight',
-    description: 'Highlight a UI element in the Laputa interface',
-    inputSchema: {
-      type: 'object',
-      properties: {
-        element: { type: 'string', enum: ['editor', 'tab', 'properties', 'notelist'], description: 'UI element to highlight' },
-        path: { type: 'string', description: 'Relative path to the note (optional)' },
+        element: { type: 'string', enum: ['editor', 'tab', 'properties', 'notelist'], description: 'Which UI element to highlight' },
+        path: { type: 'string', description: 'Optional note path to associate with the highlight' },
       },
       required: ['element'],
     },
   },
   {
-    name: 'ui_set_filter',
-    description: 'Set the sidebar filter to show notes of a specific type',
+    name: 'refresh_vault',
+    description: 'Trigger a vault rescan so new or modified files appear immediately in the Laputa note list.',
     inputSchema: {
       type: 'object',
       properties: {
-        type: { type: 'string', description: 'Type to filter by' },
+        path: { type: 'string', description: 'Optional specific note path that changed' },
       },
-      required: ['type'],
     },
   },
 ]
 
 const TOOL_HANDLERS = {
-  open_note: handleReadNote,
-  read_note: handleReadNote,
-  create_note: handleCreateNote,
   search_notes: handleSearchNotes,
-  append_to_note: handleAppendToNote,
-  edit_note_frontmatter: handleEditFrontmatter,
-  delete_note: handleDeleteNote,
-  link_notes: handleLinkNotes,
-  list_notes: handleListNotes,
-  vault_context: handleVaultContext,
-  ui_open_note: handleUiOpenNote,
-  ui_open_tab: handleUiOpenTab,
-  ui_highlight: handleUiHighlight,
-  ui_set_filter: handleUiSetFilter,
-}
-
-async function handleReadNote(args) {
-  const content = await readNote(VAULT_PATH, args.path)
-  return { content: [{ type: 'text', text: content }] }
-}
-
-async function handleCreateNote(args) {
-  const frontmatter = {}
-  if (args.is_a) frontmatter.is_a = args.is_a
-  const absPath = await createNote(VAULT_PATH, args.path, args.title, frontmatter)
-  return { content: [{ type: 'text', text: `Created note at ${absPath}` }] }
+  get_vault_context: handleVaultContext,
+  get_note: handleGetNote,
+  open_note: handleOpenNote,
+  highlight_editor: handleHighlightEditor,
+  refresh_vault: handleRefreshVault,
 }
 
 async function handleSearchNotes(args) {
@@ -238,63 +137,38 @@ async function handleSearchNotes(args) {
   return { content: [{ type: 'text', text }] }
 }
 
-async function handleAppendToNote(args) {
-  await appendToNote(VAULT_PATH, args.path, args.text)
-  return { content: [{ type: 'text', text: `Appended text to ${args.path}` }] }
-}
-
-async function handleEditFrontmatter(args) {
-  const updated = await editNoteFrontmatter(VAULT_PATH, args.path, args.patch)
-  return { content: [{ type: 'text', text: JSON.stringify(updated) }] }
-}
-
-async function handleDeleteNote(args) {
-  await deleteNote(VAULT_PATH, args.path)
-  return { content: [{ type: 'text', text: `Deleted ${args.path}` }] }
-}
-
-async function handleLinkNotes(args) {
-  const arr = await linkNotes(VAULT_PATH, args.source_path, args.property, args.target_title)
-  return { content: [{ type: 'text', text: `${args.property}: [${arr.join(', ')}]` }] }
-}
-
-async function handleListNotes(args) {
-  const notes = await listNotes(VAULT_PATH, args.type_filter, args.sort)
-  const text = notes.length === 0
-    ? 'No notes found.'
-    : notes.map(n => `${n.title} (${n.path})${n.type ? ` [${n.type}]` : ''}`).join('\n')
-  return { content: [{ type: 'text', text }] }
-}
-
 async function handleVaultContext() {
   const ctx = await vaultContext(VAULT_PATH)
   return { content: [{ type: 'text', text: JSON.stringify(ctx, null, 2) }] }
 }
 
-function handleUiOpenNote(args) {
-  broadcastUiAction('open_note', { path: args.path })
-  return { content: [{ type: 'text', text: `Opening ${args.path} in UI` }] }
+async function handleGetNote(args) {
+  const note = await getNote(VAULT_PATH, args.path)
+  return { content: [{ type: 'text', text: JSON.stringify(note, null, 2) }] }
 }
 
-function handleUiOpenTab(args) {
+function handleOpenNote(args) {
+  // Refresh vault first so the new/modified note appears in the note list,
+  // then signal the UI to open it in a tab.
+  broadcastUiAction('vault_changed', { path: args.path })
   broadcastUiAction('open_tab', { path: args.path })
-  return { content: [{ type: 'text', text: `Opening tab for ${args.path}` }] }
+  return { content: [{ type: 'text', text: `Opening ${args.path} in Laputa` }] }
 }
 
-function handleUiHighlight(args) {
+function handleHighlightEditor(args) {
   broadcastUiAction('highlight', { element: args.element, path: args.path })
   return { content: [{ type: 'text', text: `Highlighting ${args.element}` }] }
 }
 
-function handleUiSetFilter(args) {
-  broadcastUiAction('set_filter', { type: args.type })
-  return { content: [{ type: 'text', text: `Filter set to ${args.type}` }] }
+function handleRefreshVault(args) {
+  broadcastUiAction('vault_changed', { path: args?.path })
+  return { content: [{ type: 'text', text: 'Vault refresh triggered' }] }
 }
 
 // --- Server setup ---
 
 const server = new Server(
-  { name: 'laputa-mcp-server', version: '0.1.0' },
+  { name: 'laputa-mcp-server', version: '0.3.0' },
   { capabilities: { tools: {} } },
 )
 

mcp-server/test.js

@@ -4,8 +4,7 @@ import fs from 'node:fs/promises'
 import path from 'node:path'
 import os from 'node:os'
 import {
-  readNote, createNote, searchNotes, appendToNote, findMarkdownFiles,
-  editNoteFrontmatter, deleteNote, linkNotes, listNotes, vaultContext,
+  findMarkdownFiles, getNote, searchNotes, vaultContext,
 } from './vault.js'
 
 let tmpDir
@@ -65,39 +64,23 @@ describe('findMarkdownFiles', () => {
   })
 })
 
-describe('readNote', () => {
-  it('should read a note by relative path', async () => {
-    const content = await readNote(tmpDir, 'project/test-project.md')
-    assert.ok(content.includes('Test Project'))
-    assert.ok(content.includes('is_a: Project'))
+describe('getNote', () => {
+  it('should read a note with parsed frontmatter', async () => {
+    const note = await getNote(tmpDir, 'project/test-project.md')
+    assert.equal(note.path, 'project/test-project.md')
+    assert.equal(note.frontmatter.title, 'Test Project')
+    assert.equal(note.frontmatter.is_a, 'Project')
+    assert.ok(note.content.includes('test project for the MCP server'))
   })
 
   it('should throw for missing notes', async () => {
     await assert.rejects(
-      () => readNote(tmpDir, 'nonexistent.md'),
+      () => getNote(tmpDir, 'nonexistent.md'),
       { code: 'ENOENT' }
     )
   })
 })
 
-describe('createNote', () => {
-  it('should create a note with frontmatter', async () => {
-    const absPath = await createNote(tmpDir, 'note/new-note.md', 'My New Note', { is_a: 'Note' })
-    assert.ok(absPath.endsWith('new-note.md'))
-
-    const content = await fs.readFile(absPath, 'utf-8')
-    assert.ok(content.includes('title: My New Note'))
-    assert.ok(content.includes('is_a: Note'))
-    assert.ok(content.includes('# My New Note'))
-  })
-
-  it('should create parent directories', async () => {
-    const absPath = await createNote(tmpDir, 'deep/nested/dir/note.md', 'Deep Note')
-    const content = await fs.readFile(absPath, 'utf-8')
-    assert.ok(content.includes('# Deep Note'))
-  })
-})
-
 describe('searchNotes', () => {
   it('should find notes matching title', async () => {
     const results = await searchNotes(tmpDir, 'Test Project')
@@ -121,123 +104,6 @@ describe('searchNotes', () => {
   })
 })
 
-describe('appendToNote', () => {
-  it('should append text to a note', async () => {
-    await appendToNote(tmpDir, 'note/daily-log.md', '## Evening Update\nFinished testing.')
-    const content = await readNote(tmpDir, 'note/daily-log.md')
-    assert.ok(content.includes('## Evening Update'))
-    assert.ok(content.includes('Finished testing.'))
-  })
-})
-
-describe('editNoteFrontmatter', () => {
-  it('should merge a patch into frontmatter', async () => {
-    const updated = await editNoteFrontmatter(tmpDir, 'project/test-project.md', { status: 'Completed', priority: 'High' })
-    assert.equal(updated.status, 'Completed')
-    assert.equal(updated.priority, 'High')
-    assert.equal(updated.title, 'Test Project')
-  })
-
-  it('should preserve existing frontmatter fields', async () => {
-    const content = await readNote(tmpDir, 'project/test-project.md')
-    assert.ok(content.includes('is_a: Project'))
-    assert.ok(content.includes('status: Completed'))
-  })
-
-  it('should throw for missing file', async () => {
-    await assert.rejects(
-      () => editNoteFrontmatter(tmpDir, 'nonexistent.md', { foo: 'bar' }),
-      { code: 'ENOENT' }
-    )
-  })
-})
-
-describe('deleteNote', () => {
-  it('should delete an existing note', async () => {
-    const delPath = 'note/to-delete.md'
-    await createNote(tmpDir, delPath, 'To Delete')
-    const absPath = path.join(tmpDir, delPath)
-
-    // Verify it exists
-    await fs.access(absPath)
-
-    await deleteNote(tmpDir, delPath)
-
-    await assert.rejects(
-      () => fs.access(absPath),
-      { code: 'ENOENT' }
-    )
-  })
-
-  it('should throw for missing file', async () => {
-    await assert.rejects(
-      () => deleteNote(tmpDir, 'nonexistent.md'),
-      { code: 'ENOENT' }
-    )
-  })
-})
-
-describe('linkNotes', () => {
-  it('should add a target to an array property', async () => {
-    const linkPath = 'project/link-test.md'
-    await createNote(tmpDir, linkPath, 'Link Test', { is_a: 'Project' })
-
-    const result = await linkNotes(tmpDir, linkPath, 'related_to', '[[note/daily-log]]')
-    assert.deepEqual(result, ['[[note/daily-log]]'])
-  })
-
-  it('should not duplicate existing links', async () => {
-    const linkPath = 'project/link-test.md'
-
-    await linkNotes(tmpDir, linkPath, 'related_to', '[[note/daily-log]]')
-    const result = await linkNotes(tmpDir, linkPath, 'related_to', '[[note/daily-log]]')
-    assert.equal(result.length, 1)
-  })
-
-  it('should add multiple distinct links', async () => {
-    const linkPath = 'project/link-test.md'
-
-    await linkNotes(tmpDir, linkPath, 'related_to', '[[project/test-project]]')
-    const result = await linkNotes(tmpDir, linkPath, 'related_to', '[[project/test-project]]')
-    // Should have daily-log and test-project
-    assert.ok(result.includes('[[note/daily-log]]'))
-    assert.ok(result.includes('[[project/test-project]]'))
-    assert.equal(result.length, 2)
-  })
-})
-
-describe('listNotes', () => {
-  it('should list all notes sorted by title', async () => {
-    const notes = await listNotes(tmpDir)
-    assert.ok(notes.length >= 3)
-    // Verify sorted by title
-    for (let i = 1; i < notes.length; i++) {
-      assert.ok(notes[i - 1].title.localeCompare(notes[i].title) <= 0)
-    }
-  })
-
-  it('should filter by type', async () => {
-    const projects = await listNotes(tmpDir, 'Project')
-    assert.ok(projects.length >= 1)
-    for (const n of projects) {
-      assert.equal(n.type, 'Project')
-    }
-  })
-
-  it('should return empty for unknown type', async () => {
-    const notes = await listNotes(tmpDir, 'UnknownType12345')
-    assert.equal(notes.length, 0)
-  })
-
-  it('should support mtime sorting', async () => {
-    const notes = await listNotes(tmpDir, undefined, 'mtime')
-    assert.ok(notes.length >= 1)
-    // Just verify it returns results without crashing
-    assert.ok(notes[0].path)
-    assert.ok(notes[0].title)
-  })
-})
-
 describe('vaultContext', () => {
   it('should return types, recent notes, and vault path', async () => {
     const ctx = await vaultContext(tmpDir)
@@ -264,4 +130,15 @@ describe('vaultContext', () => {
       assert.ok(note.title)
     }
   })
+
+  it('should include folders', async () => {
+    const ctx = await vaultContext(tmpDir)
+    assert.ok(ctx.folders.includes('project/'))
+    assert.ok(ctx.folders.includes('note/'))
+  })
+
+  it('should report correct note count', async () => {
+    const ctx = await vaultContext(tmpDir)
+    assert.equal(ctx.noteCount, 3)
+  })
 })

mcp-server/vault.js

@@ -1,5 +1,6 @@
 /**
- * Vault operations — file I/O for Laputa markdown vault.
+ * Vault operations — read-only helpers for Laputa markdown vault.
+ * Write operations are handled by the agent's native bash/write/edit tools.
  */
 import fs from 'node:fs/promises'
 import path from 'node:path'
@@ -26,36 +27,20 @@ export async function findMarkdownFiles(dir) {
 }
 
 /**
- * Read a note's content by path (absolute or relative to vault).
+ * Read a note with parsed frontmatter and content.
  * @param {string} vaultPath
  * @param {string} notePath
- * @returns {Promise<string>}
+ * @returns {Promise<{path: string, frontmatter: Record<string, unknown>, content: string}>}
  */
-export async function readNote(vaultPath, notePath) {
+export async function getNote(vaultPath, notePath) {
   const absPath = path.isAbsolute(notePath) ? notePath : path.join(vaultPath, notePath)
-  return fs.readFile(absPath, 'utf-8')
-}
-
-/**
- * Create a new note with optional frontmatter.
- * @param {string} vaultPath
- * @param {string} relativePath
- * @param {string} title
- * @param {Record<string, string>} [frontmatter]
- * @returns {Promise<string>} The absolute path of the created file.
- */
-export async function createNote(vaultPath, relativePath, title, frontmatter = {}) {
-  const absPath = path.join(vaultPath, relativePath)
-  await fs.mkdir(path.dirname(absPath), { recursive: true })
-
-  const fmEntries = { title, ...frontmatter }
-  const fmLines = Object.entries(fmEntries)
-    .map(([k, v]) => `${k}: ${v}`)
-    .join('\n')
-
-  const content = `---\n${fmLines}\n---\n\n# ${title}\n\n`
-  await fs.writeFile(absPath, content, 'utf-8')
-  return absPath
+  const raw = await fs.readFile(absPath, 'utf-8')
+  const parsed = matter(raw)
+  return {
+    path: path.relative(vaultPath, absPath),
+    frontmatter: parsed.data,
+    content: parsed.content.trim(),
+  }
 }
 
 /**
@@ -92,110 +77,14 @@ export async function searchNotes(vaultPath, query, limit = 10) {
 }
 
 /**
- * Append text to the end of a note.
+ * Get vault context: unique types, note count, top-level folders, and 20 most recent notes.
  * @param {string} vaultPath
- * @param {string} notePath
- * @param {string} text
- * @returns {Promise<void>}
- */
-export async function appendToNote(vaultPath, notePath, text) {
-  const absPath = path.isAbsolute(notePath) ? notePath : path.join(vaultPath, notePath)
-  const current = await fs.readFile(absPath, 'utf-8')
-  const separator = current.endsWith('\n') ? '\n' : '\n\n'
-  await fs.writeFile(absPath, current + separator + text + '\n', 'utf-8')
-}
-
-/**
- * Merge a patch object into a note's YAML frontmatter.
- * @param {string} vaultPath
- * @param {string} notePath
- * @param {Record<string, unknown>} patch
- * @returns {Promise<Record<string, unknown>>} The updated frontmatter.
- */
-export async function editNoteFrontmatter(vaultPath, notePath, patch) {
-  const absPath = path.isAbsolute(notePath) ? notePath : path.join(vaultPath, notePath)
-  const raw = await fs.readFile(absPath, 'utf-8')
-  const parsed = matter(raw)
-  Object.assign(parsed.data, patch)
-  const updated = matter.stringify(parsed.content, parsed.data)
-  await fs.writeFile(absPath, updated, 'utf-8')
-  return parsed.data
-}
-
-/**
- * Delete a note file.
- * @param {string} vaultPath
- * @param {string} notePath
- * @returns {Promise<void>}
- */
-export async function deleteNote(vaultPath, notePath) {
-  const absPath = path.isAbsolute(notePath) ? notePath : path.join(vaultPath, notePath)
-  await fs.unlink(absPath)
-}
-
-/**
- * Add a target title to an array property in a note's frontmatter.
- * Creates the property as an array if it doesn't exist.
- * @param {string} vaultPath
- * @param {string} sourcePath
- * @param {string} property
- * @param {string} targetTitle
- * @returns {Promise<string[]>} The updated array.
- */
-export async function linkNotes(vaultPath, sourcePath, property, targetTitle) {
-  const absPath = path.isAbsolute(sourcePath) ? sourcePath : path.join(vaultPath, sourcePath)
-  const raw = await fs.readFile(absPath, 'utf-8')
-  const parsed = matter(raw)
-  const current = Array.isArray(parsed.data[property]) ? parsed.data[property] : []
-  if (!current.includes(targetTitle)) {
-    current.push(targetTitle)
-  }
-  parsed.data[property] = current
-  const updated = matter.stringify(parsed.content, parsed.data)
-  await fs.writeFile(absPath, updated, 'utf-8')
-  return current
-}
-
-/**
- * List all notes in the vault, optionally filtered by type.
- * @param {string} vaultPath
- * @param {string} [typeFilter]
- * @param {string} [sort] - 'title' or 'mtime' (default: 'title')
- * @returns {Promise<Array<{path: string, title: string, type: string|null}>>}
- */
-export async function listNotes(vaultPath, typeFilter, sort = 'title') {
-  const files = await findMarkdownFiles(vaultPath)
-  const notes = await Promise.all(files.map(async (filePath) => {
-    const raw = await fs.readFile(filePath, 'utf-8')
-    const parsed = matter(raw)
-    const relativePath = path.relative(vaultPath, filePath)
-    const title = parsed.data.title || extractTitle(raw, path.basename(filePath, '.md'))
-    const type = parsed.data.type || parsed.data.is_a || null
-    const stat = sort === 'mtime' ? await fs.stat(filePath) : null
-    return { path: relativePath, title, type, mtime: stat?.mtimeMs ?? 0 }
-  }))
-
-  const filtered = typeFilter
-    ? notes.filter(n => n.type === typeFilter)
-    : notes
-
-  if (sort === 'mtime') {
-    filtered.sort((a, b) => b.mtime - a.mtime)
-  } else {
-    filtered.sort((a, b) => a.title.localeCompare(b.title))
-  }
-
-  return filtered.map(({ mtime: _mtime, ...rest }) => rest)
-}
-
-/**
- * Get vault context: unique types and 20 most recent notes.
- * @param {string} vaultPath
- * @returns {Promise<{types: string[], recentNotes: Array<{path: string, title: string, type: string|null}>, vaultPath: string}>}
+ * @returns {Promise<{types: string[], noteCount: number, folders: string[], recentNotes: Array<{path: string, title: string, type: string|null}>, vaultPath: string}>}
  */
 export async function vaultContext(vaultPath) {
   const files = await findMarkdownFiles(vaultPath)
   const typesSet = new Set()
+  const foldersSet = new Set()
   const notesWithMtime = []
 
   for (const filePath of files) {
@@ -203,9 +92,12 @@ export async function vaultContext(vaultPath) {
     const parsed = matter(raw)
     const type = parsed.data.type || parsed.data.is_a || null
     if (type) typesSet.add(type)
+    const rel = path.relative(vaultPath, filePath)
+    const topFolder = rel.split(path.sep)[0]
+    if (topFolder !== rel) foldersSet.add(topFolder + '/')
     const stat = await fs.stat(filePath)
     notesWithMtime.push({
-      path: path.relative(vaultPath, filePath),
+      path: rel,
       title: parsed.data.title || extractTitle(raw, path.basename(filePath, '.md')),
       type,
       mtime: stat.mtimeMs,
@@ -215,7 +107,24 @@ export async function vaultContext(vaultPath) {
   notesWithMtime.sort((a, b) => b.mtime - a.mtime)
   const recentNotes = notesWithMtime.slice(0, 20).map(({ mtime: _mtime, ...rest }) => rest)
 
-  return { types: [...typesSet].sort(), recentNotes, vaultPath }
+  // Read config files for AI agent context
+  const configFiles = {}
+  try {
+    const agentsPath = path.join(vaultPath, 'config', 'agents.md')
+    const agentsContent = await fs.readFile(agentsPath, 'utf-8')
+    configFiles.agents = agentsContent
+  } catch {
+    // config/agents.md may not exist yet
+  }
+
+  return {
+    types: [...typesSet].sort(),
+    noteCount: files.length,
+    folders: [...foldersSet].sort(),
+    recentNotes,
+    configFiles,
+    vaultPath,
+  }
 }
 
 // --- Helpers ---

mcp-server/ws-bridge.js

@@ -19,10 +19,10 @@
  * Protocol (UI bridge):
  *   Server broadcasts: { "type": "ui_action", "action": "open_note", "path": "..." }
  */
+import { createServer } from 'node:http'
 import { WebSocketServer } from 'ws'
 import {
-  readNote, createNote, searchNotes, appendToNote,
-  editNoteFrontmatter, deleteNote, linkNotes, listNotes, vaultContext,
+  getNote, searchNotes, vaultContext,
 } from './vault.js'
 
 const VAULT_PATH = process.env.VAULT_PATH || process.env.HOME + '/Laputa'
@@ -40,27 +40,18 @@ function broadcastUiAction(action, payload) {
   }
 }
 
-function buildFrontmatter(args) {
-  const fm = {}
-  if (args.is_a) fm.is_a = args.is_a
-  return fm
-}
 
 const TOOL_HANDLERS = {
-  open_note: (args) => readNote(VAULT_PATH, args.path).then(text => ({ content: text })),
-  read_note: (args) => readNote(VAULT_PATH, args.path).then(text => ({ content: text })),
-  create_note: (args) => createNote(VAULT_PATH, args.path, args.title, buildFrontmatter(args)),
+  open_note: (args) => getNote(VAULT_PATH, args.path).then(note => ({ content: note.content, frontmatter: note.frontmatter })),
+  read_note: (args) => getNote(VAULT_PATH, args.path).then(note => ({ content: note.content, frontmatter: note.frontmatter })),
   search_notes: (args) => searchNotes(VAULT_PATH, args.query, args.limit),
-  append_to_note: (args) => appendToNote(VAULT_PATH, args.path, args.text).then(() => ({ ok: true })),
-  edit_note_frontmatter: (args) => editNoteFrontmatter(VAULT_PATH, args.path, args.patch),
-  delete_note: (args) => deleteNote(VAULT_PATH, args.path).then(() => ({ ok: true })),
-  link_notes: (args) => linkNotes(VAULT_PATH, args.source_path, args.property, args.target_title),
-  list_notes: (args) => listNotes(VAULT_PATH, args.type_filter, args.sort),
   vault_context: () => vaultContext(VAULT_PATH),
-  ui_open_note: (args) => { broadcastUiAction('open_note', { path: args.path }); return { ok: true } },
-  ui_open_tab: (args) => { broadcastUiAction('open_tab', { path: args.path }); return { ok: true } },
+  ui_open_note: (args) => { broadcastUiAction('vault_changed', { path: args.path }); broadcastUiAction('open_note', { path: args.path }); return { ok: true } },
+  ui_open_tab: (args) => { broadcastUiAction('vault_changed', { path: args.path }); broadcastUiAction('open_tab', { path: args.path }); return { ok: true } },
   ui_highlight: (args) => { broadcastUiAction('highlight', { element: args.element, path: args.path }); return { ok: true } },
-  ui_set_filter: (args) => { broadcastUiAction('set_filter', { type: args.type }); return { ok: true } },
+  ui_set_filter: (args) => { broadcastUiAction('set_filter', { filterType: args.type }); return { ok: true } },
+  highlight_editor: (args) => { broadcastUiAction('highlight', { element: args.element, path: args.path }); return { ok: true } },
+  refresh_vault: (args) => { broadcastUiAction('vault_changed', { path: args?.path }); return { ok: true } },
 }
 
 async function handleMessage(data) {
@@ -80,15 +71,41 @@ async function handleMessage(data) {
   }
 }
 
+/**
+ * Attempt to start the UI bridge WebSocket server.
+ * Returns a Promise that resolves to the WebSocketServer or null if the port
+ * is unavailable (e.g. another Laputa instance owns it).
+ */
 export function startUiBridge(port = WS_UI_PORT) {
-  uiBridge = new WebSocketServer({ port })
+  return new Promise((resolve) => {
+    const httpServer = createServer()
 
-  uiBridge.on('connection', () => {
-    console.error(`[ws-bridge] UI client connected on port ${port}`)
+    httpServer.on('error', (err) => {
+      if (err.code === 'EADDRINUSE') {
+        console.error(`[ws-bridge] UI bridge port ${port} already in use, disabling bridge`)
+      } else {
+        console.error(`[ws-bridge] UI bridge error: ${err.message}`)
+      }
+      resolve(null)
+    })
+
+    httpServer.listen(port, () => {
+      const wss = new WebSocketServer({ server: httpServer })
+      wss.on('connection', (ws) => {
+        console.error(`[ws-bridge] UI client connected on port ${port}`)
+        // Relay: when a client sends a message, broadcast to all OTHER clients.
+        // This allows the MCP stdio server (connected as a client) to reach the frontend.
+        ws.on('message', (raw) => {
+          for (const client of wss.clients) {
+            if (client !== ws && client.readyState === 1) client.send(raw.toString())
+          }
+        })
+      })
+      uiBridge = wss
+      console.error(`[ws-bridge] UI bridge listening on ws://localhost:${port}`)
+      resolve(wss)
+    })
   })
-
-  console.error(`[ws-bridge] UI bridge listening on ws://localhost:${port}`)
-  return uiBridge
 }
 
 export function startBridge(port = WS_PORT) {
@@ -116,6 +133,5 @@ export function startBridge(port = WS_PORT) {
 // Run directly if invoked as main module
 const isMain = process.argv[1]?.endsWith('ws-bridge.js')
 if (isMain) {
-  startUiBridge()
-  startBridge()
+  startUiBridge().then(() => startBridge())
 }

package.json

@@ -13,6 +13,7 @@
     "test": "vitest run",
     "test:watch": "vitest",
     "test:e2e": "playwright test",
+    "playwright:smoke": "playwright test tests/smoke/",
     "test:coverage": "vitest run --coverage",
     "prepare": "husky"
   },
@@ -21,6 +22,12 @@
     "@blocknote/core": "^0.46.2",
     "@blocknote/mantine": "^0.46.2",
     "@blocknote/react": "^0.46.2",
+    "@codemirror/commands": "^6.10.2",
+    "@codemirror/lang-markdown": "^6.5.0",
+    "@codemirror/lang-yaml": "^6.1.2",
+    "@codemirror/language": "^6.12.2",
+    "@codemirror/state": "^6.5.4",
+    "@codemirror/view": "^6.39.16",
     "@dnd-kit/core": "^6.3.1",
     "@dnd-kit/sortable": "^10.0.0",
     "@dnd-kit/utilities": "^3.2.2",
@@ -49,7 +56,10 @@
     "react": "^19.2.0",
     "react-day-picker": "^9.13.2",
     "react-dom": "^19.2.0",
+    "react-markdown": "^10.1.0",
     "react-virtuoso": "^4.18.1",
+    "rehype-highlight": "^7.0.2",
+    "remark-gfm": "^4.0.1",
     "tailwind-merge": "^3.4.1",
     "tailwindcss": "^4.1.18",
     "tw-animate-css": "^1.4.0"
@@ -63,6 +73,7 @@
     "@types/node": "^24.10.1",
     "@types/react": "^19.2.7",
     "@types/react-dom": "^19.2.3",
+    "@types/ws": "^8.18.1",
     "@vitejs/plugin-react": "^5.1.1",
     "@vitest/coverage-v8": "^4.0.18",
     "esbuild": "^0.27.3",
@@ -76,6 +87,7 @@
     "typescript": "~5.9.3",
     "typescript-eslint": "^8.48.0",
     "vite": "^7.3.1",
-    "vitest": "^4.0.18"
+    "vitest": "^4.0.18",
+    "ws": "^8.19.0"
   }
 }

playwright.config.ts

@@ -1,15 +1,18 @@
 import { defineConfig } from '@playwright/test'
 
 export default defineConfig({
-  testDir: './e2e',
-  timeout: 30000,
+  testDir: './tests/smoke',
+  timeout: 15_000,
+  retries: 0,
   workers: 1,
   use: {
-    baseURL: 'http://localhost:5173',
+    baseURL: process.env.BASE_URL || 'http://localhost:5201',
+    headless: true,
   },
+  projects: [{ name: 'chromium', use: { browserName: 'chromium' } }],
   webServer: {
-    command: 'pnpm dev',
-    port: 5173,
+    command: `pnpm dev --port ${process.env.BASE_URL?.match(/:(\d+)/)?.[1] || '5201'}`,
+    url: process.env.BASE_URL || 'http://localhost:5201',
     reuseExistingServer: true,
   },
 })

pnpm-lock.yaml

@@ -20,6 +20,24 @@ importers:
       '@blocknote/react':
         specifier: ^0.46.2
         version: 0.46.2(@floating-ui/dom@1.7.5)(@types/hast@3.0.4)(@types/react-dom@19.2.3(@types/react@19.2.14))(@types/react@19.2.14)(highlight.js@11.11.1)(lowlight@3.3.0)(react-dom@19.2.4(react@19.2.4))(react@19.2.4)
+      '@codemirror/commands':
+        specifier: ^6.10.2
+        version: 6.10.2
+      '@codemirror/lang-markdown':
+        specifier: ^6.5.0
+        version: 6.5.0
+      '@codemirror/lang-yaml':
+        specifier: ^6.1.2
+        version: 6.1.2
+      '@codemirror/language':
+        specifier: ^6.12.2
+        version: 6.12.2
+      '@codemirror/state':
+        specifier: ^6.5.4
+        version: 6.5.4
+      '@codemirror/view':
+        specifier: ^6.39.16
+        version: 6.39.16
       '@dnd-kit/core':
         specifier: ^6.3.1
         version: 6.3.1(react-dom@19.2.4(react@19.2.4))(react@19.2.4)
@@ -104,9 +122,18 @@ importers:
       react-dom:
         specifier: ^19.2.0
         version: 19.2.4(react@19.2.4)
+      react-markdown:
+        specifier: ^10.1.0
+        version: 10.1.0(@types/react@19.2.14)(react@19.2.4)
       react-virtuoso:
         specifier: ^4.18.1
         version: 4.18.1(react-dom@19.2.4(react@19.2.4))(react@19.2.4)
+      rehype-highlight:
+        specifier: ^7.0.2
+        version: 7.0.2
+      remark-gfm:
+        specifier: ^4.0.1
+        version: 4.0.1
       tailwind-merge:
         specifier: ^3.4.1
         version: 3.4.1
@@ -141,6 +168,9 @@ importers:
       '@types/react-dom':
         specifier: ^19.2.3
         version: 19.2.3(@types/react@19.2.14)
+      '@types/ws':
+        specifier: ^8.18.1
+        version: 8.18.1
       '@vitejs/plugin-react':
         specifier: ^5.1.1
         version: 5.1.4(vite@7.3.1(@types/node@24.10.13)(jiti@2.6.1)(lightningcss@1.30.2))
@@ -183,6 +213,9 @@ importers:
       vitest:
         specifier: ^4.0.18
         version: 4.0.18(@types/node@24.10.13)(jiti@2.6.1)(jsdom@28.0.0)(lightningcss@1.30.2)
+      ws:
+        specifier: ^8.19.0
+        version: 8.19.0
 
   mcp-server:
     dependencies:
@@ -336,6 +369,39 @@ packages:
       react: ^18.0 || ^19.0 || >= 19.0.0-rc
       react-dom: ^18.0 || ^19.0 || >= 19.0.0-rc
 
+  '@codemirror/autocomplete@6.20.1':
+    resolution: {integrity: sha512-1cvg3Vz1dSSToCNlJfRA2WSI4ht3K+WplO0UMOgmUYPivCyy2oueZY6Lx7M9wThm7SDUBViRmuT+OG/i8+ON9A==}
+
+  '@codemirror/commands@6.10.2':
+    resolution: {integrity: sha512-vvX1fsih9HledO1c9zdotZYUZnE4xV0m6i3m25s5DIfXofuprk6cRcLUZvSk3CASUbwjQX21tOGbkY2BH8TpnQ==}
+
+  '@codemirror/lang-css@6.3.1':
+    resolution: {integrity: sha512-kr5fwBGiGtmz6l0LSJIbno9QrifNMUusivHbnA1H6Dmqy4HZFte3UAICix1VuKo0lMPKQr2rqB+0BkKi/S3Ejg==}
+
+  '@codemirror/lang-html@6.4.11':
+    resolution: {integrity: sha512-9NsXp7Nwp891pQchI7gPdTwBuSuT3K65NGTHWHNJ55HjYcHLllr0rbIZNdOzas9ztc1EUVBlHou85FFZS4BNnw==}
+
+  '@codemirror/lang-javascript@6.2.5':
+    resolution: {integrity: sha512-zD4e5mS+50htS7F+TYjBPsiIFGanfVqg4HyUz6WNFikgOPf2BgKlx+TQedI1w6n/IqRBVBbBWmGFdLB/7uxO4A==}
+
+  '@codemirror/lang-markdown@6.5.0':
+    resolution: {integrity: sha512-0K40bZ35jpHya6FriukbgaleaqzBLZfOh7HuzqbMxBXkbYMJDxfF39c23xOgxFezR+3G+tR2/Mup+Xk865OMvw==}
+
+  '@codemirror/lang-yaml@6.1.2':
+    resolution: {integrity: sha512-dxrfG8w5Ce/QbT7YID7mWZFKhdhsaTNOYjOkSIMt1qmC4VQnXSDSYVHHHn8k6kJUfIhtLo8t1JJgltlxWdsITw==}
+
+  '@codemirror/language@6.12.2':
+    resolution: {integrity: sha512-jEPmz2nGGDxhRTg3lTpzmIyGKxz3Gp3SJES4b0nAuE5SWQoKdT5GoQ69cwMmFd+wvFUhYirtDTr0/DRHpQAyWg==}
+
+  '@codemirror/lint@6.9.5':
+    resolution: {integrity: sha512-GElsbU9G7QT9xXhpUg1zWGmftA/7jamh+7+ydKRuT0ORpWS3wOSP0yT1FOlIZa7mIJjpVPipErsyvVqB9cfTFA==}
+
+  '@codemirror/state@6.5.4':
+    resolution: {integrity: sha512-8y7xqG/hpB53l25CIoit9/ngxdfoG+fx+V3SHBrinnhOtLvKHRyAJJuHzkWrR4YXXLX8eXBsejgAAxHUOdW1yw==}
+
+  '@codemirror/view@6.39.16':
+    resolution: {integrity: sha512-m6S22fFpKtOWhq8HuhzsI1WzUP/hB9THbDj0Tl5KX4gbO6Y91hwBl7Yky33NdvB6IffuRFiBxf1R8kJMyXmA4Q==}
+
   '@csstools/color-helpers@6.0.1':
     resolution: {integrity: sha512-NmXRccUJMk2AWA5A7e5a//3bCIMyOu2hAtdRYrhPPHjDxINuCwX1w6rnIZ4xjLcp0ayv6h8Pc3X0eJUGiAAXHQ==}
     engines: {node: '>=20.19.0'}
@@ -664,6 +730,30 @@ packages:
   '@jridgewell/trace-mapping@0.3.31':
     resolution: {integrity: sha512-zzNR+SdQSDJzc8joaeP8QQoCQr8NuYx2dIIytl1QeBEZHJ9uW6hebsrYgbz8hJwUQao3TWCMtmfV8Nu1twOLAw==}
 
+  '@lezer/common@1.5.1':
+    resolution: {integrity: sha512-6YRVG9vBkaY7p1IVxL4s44n5nUnaNnGM2/AckNgYOnxTG2kWh1vR8BMxPseWPjRNpb5VtXnMpeYAEAADoRV1Iw==}
+
+  '@lezer/css@1.3.1':
+    resolution: {integrity: sha512-PYAKeUVBo3HFThruRyp/iK91SwiZJnzXh8QzkQlwijB5y+N5iB28+iLk78o2zmKqqV0uolNhCwFqB8LA7b0Svg==}
+
+  '@lezer/highlight@1.2.3':
+    resolution: {integrity: sha512-qXdH7UqTvGfdVBINrgKhDsVTJTxactNNxLk7+UMwZhU13lMHaOBlJe9Vqp907ya56Y3+ed2tlqzys7jDkTmW0g==}
+
+  '@lezer/html@1.3.13':
+    resolution: {integrity: sha512-oI7n6NJml729m7pjm9lvLvmXbdoMoi2f+1pwSDJkl9d68zGr7a9Btz8NdHTGQZtW2DA25ybeuv/SyDb9D5tseg==}
+
+  '@lezer/javascript@1.5.4':
+    resolution: {integrity: sha512-vvYx3MhWqeZtGPwDStM2dwgljd5smolYD2lR2UyFcHfxbBQebqx8yjmFmxtJ/E6nN6u1D9srOiVWm3Rb4tmcUA==}
+
+  '@lezer/lr@1.4.8':
+    resolution: {integrity: sha512-bPWa0Pgx69ylNlMlPvBPryqeLYQjyJjqPx+Aupm5zydLIF3NE+6MMLT8Yi23Bd9cif9VS00aUebn+6fDIGBcDA==}
+
+  '@lezer/markdown@1.6.3':
+    resolution: {integrity: sha512-jpGm5Ps+XErS+xA4urw7ogEGkeZOahVQF21Z6oECF0sj+2liwZopd2+I8uH5I/vZsRuuze3OxBREIANLf6KKUw==}
+
+  '@lezer/yaml@1.0.4':
+    resolution: {integrity: sha512-2lrrHqxalACEbxIbsjhqGpSW8kWpUKuY6RHgnSAFZa6qK62wvnPxA8hGOwOoDbwHcOFs5M4o27mjGu+P7TvBmw==}
+
   '@mantine/core@8.3.14':
     resolution: {integrity: sha512-ZOxggx65Av1Ii1NrckCuqzluRpmmG+8DyEw24wDom3rmwsPg9UV+0le2QTyI5Eo60LzPfUju1KuEPiUzNABIPg==}
     peerDependencies:
@@ -681,6 +771,9 @@ packages:
     peerDependencies:
       react: '>=16.8.0'
 
+  '@marijn/find-cluster-break@1.0.2':
+    resolution: {integrity: sha512-l0h88YhZFyKdXIFNfSWpyjStDjGHwZ/U7iobcK1cQQD8sejsONdQtTVU+1wVN1PBw40PiiHB1vA5S7VTfQiP9g==}
+
   '@modelcontextprotocol/sdk@1.27.1':
     resolution: {integrity: sha512-sr6GbP+4edBwFndLbM60gf07z0FQ79gaExpnsjMGePXqFcSSb7t6iscpjk9DhFhwd+mTEQrzNafGP8/iGGFYaA==}
     engines: {node: '>=18'}
@@ -1906,6 +1999,9 @@ packages:
   '@types/deep-eql@4.0.2':
     resolution: {integrity: sha512-c9h9dVVMigMPc4bwTvC5dxqtqJZwQPePsWjPlpSOnojbor6pGqdk541lfA7AqFQr5pB1BRdq0juY9db81BwyFw==}
 
+  '@types/estree-jsx@1.0.5':
+    resolution: {integrity: sha512-52CcUVNFyfb1A2ALocQw/Dd1BQFNmSdkuC3BkZ6iqhdMfQz7JWOFRuJFloOzjk+6WijU56m9oKXFAXc7o3Towg==}
+
   '@types/estree@1.0.8':
     resolution: {integrity: sha512-dWHzHa2WqEXI/O1E9OjrocMTKJl2mSrEolh1Iomrv6U+JuNwaHXsXx9bLu5gG7BUWFIN0skIQJQ/L1rIex4X6w==}
 
@@ -1941,6 +2037,9 @@ packages:
   '@types/react@19.2.14':
     resolution: {integrity: sha512-ilcTH/UniCkMdtexkoCN0bI7pMcJDvmQFPvuPvmEaYA/NSfFTAgdUSLAoVjaRJm7+6PvcM+q1zYOwS4wTYMF9w==}
 
+  '@types/unist@2.0.11':
+    resolution: {integrity: sha512-CmBKiL6NNo/OqgmMn95Fk9Whlp2mtvIv+KNpQKN2F4SjvrEesubTRWGYSg+BnWZOnlCaSTU1sMpsBOzgbYhnsA==}
+
   '@types/unist@3.0.3':
     resolution: {integrity: sha512-ko/gIFJRv177XgZsZcBwnqJN5x/Gien8qNOn0D5bQU/zAzVf9Zt3BlcUiLqhV9y4ARk0GbT3tnUiPNgnTXzc/Q==}
 
@@ -1950,6 +2049,9 @@ packages:
   '@types/use-sync-external-store@1.5.0':
     resolution: {integrity: sha512-5dyB8nLC/qogMrlCizZnYWQTA4lnb/v+It+sqNl5YnSRAPMlIqY/X0Xn+gZw8vOL+TgTTr28VEbn3uf8fUtAkw==}
 
+  '@types/ws@8.18.1':
+    resolution: {integrity: sha512-ThVF6DCVhA8kUGy+aazFQ4kXQ7E1Ty7A3ypFOe0IcJV8O/M511G99AW24irKrW56Wt44yG9+ij8FaqoBGkuBXg==}
+
   '@typescript-eslint/eslint-plugin@8.55.0':
     resolution: {integrity: sha512-1y/MVSz0NglV1ijHC8OT49mPJ4qhPYjiK08YUQVbIOyu+5k862LKUHFkpKHWu//zmr7hDR2rhwUm6gnCGNmGBQ==}
     engines: {node: ^18.18.0 || ^20.9.0 || >=21.1.0}
@@ -2191,6 +2293,9 @@ packages:
   character-entities@2.0.2:
     resolution: {integrity: sha512-shx7oQ0Awen/BRIdkjkvz54PnEEI/EjwXDSIZp86/KKdbafHh1Df/RYGBhn4hbe2+uKC9FnT5UCEdyPz3ai9hQ==}
 
+  character-reference-invalid@2.0.1:
+    resolution: {integrity: sha512-iBZ4F4wRbyORVsu0jPV7gXkOsGYjGHPmAyv+HiHG8gi5PtC9KI2j1+v8/tlibRvjoWX027ypmG/n0HtO5t7unw==}
+
   class-variance-authority@0.7.1:
     resolution: {integrity: sha512-Ka+9Trutv7G8M6WT6SeiRWz792K5qEqIGEGzXKhAE6xOWAY6pPH8U+9IY3oCMv6kqTmLsv7Xh/2w2RigkePMsg==}
 
@@ -2429,6 +2534,9 @@ packages:
     resolution: {integrity: sha512-MMdARuVEQziNTeJD8DgMqmhwR11BRQ/cBP+pLtYdSTnf3MIO8fFeiINEbX36ZdNlfU/7A9f3gUw49B3oQsvwBA==}
     engines: {node: '>=4.0'}
 
+  estree-util-is-identifier-name@3.0.0:
+    resolution: {integrity: sha512-hFtqIDZTIUZ9BXLb8y4pYGyk6+wekIivNVTcmvk8NoOh+VeRn5y6cEHzbURrWbfp1fIqdVipilzj+lfaadNZmg==}
+
   estree-walker@3.0.3:
     resolution: {integrity: sha512-7RUKfXgSMMkzt6ZuXmqapOurLGPPfgj6l9uRZ7lRGolvk0y2yocc35LdcxKC5PQZdn2DMqioAQ2NoWcrTKmm6g==}
 
@@ -2621,6 +2729,9 @@ packages:
   hast-util-to-html@9.0.5:
     resolution: {integrity: sha512-OguPdidb+fbHQSU4Q4ZiLKnzWo8Wwsf5bZfbvu7//a9oTYoqD/fWpe96NuHkoS9h0ccGOTe0C4NGXdtS0iObOw==}
 
+  hast-util-to-jsx-runtime@2.3.6:
+    resolution: {integrity: sha512-zl6s8LwNyo1P9uw+XJGvZtdFF1GdAkOg8ujOw+4Pyb76874fLps4ueHXDhXWdk6YHQ6OgUtinliG7RsYvCbbBg==}
+
   hast-util-to-mdast@10.1.2:
     resolution: {integrity: sha512-FiCRI7NmOvM4y+f5w32jPRzcxDIz+PUqDwEqn1A+1q2cdp3B8Gx7aVrXORdOKjMNDQsD1ogOr896+0jJHW1EFQ==}
 
@@ -2654,6 +2765,9 @@ packages:
   html-escaper@2.0.2:
     resolution: {integrity: sha512-H2iMtd0I4Mt5eYiapRdIDjp+XzelXQ0tFE4JS7YFwFevXXMmOp9myNrUvCg0D6ws8iqkRPBfKHgbwig1SmlLfg==}
 
+  html-url-attributes@3.0.1:
+    resolution: {integrity: sha512-ol6UPyBWqsrO6EJySPz2O7ZSr856WDrEzM5zMqp+FJJLGMW35cLYmmZnl0vztAZxRUoNZJFTCohfjuIJ8I4QBQ==}
+
   html-void-elements@3.0.0:
     resolution: {integrity: sha512-bEqo66MRXsUGxWHV5IP0PUiAWwoEjba4VCzg0LjFJBpchPaTfyfCKTG6bc5F8ucKec3q5y6qOdGyYTSBEvhCrg==}
 
@@ -2704,6 +2818,9 @@ packages:
   inherits@2.0.4:
     resolution: {integrity: sha512-k/vGaX4/Yla3WzyMCvTQOXYeIHvqOKtnqBduzTHpzpQZzAskKMhZ2K+EnBiSM9zGSoIFeMpXKxa4dYeZIQqewQ==}
 
+  inline-style-parser@0.2.7:
+    resolution: {integrity: sha512-Nb2ctOyNR8DqQoR0OwRG95uNWIC0C1lCgf5Naz5H6Ji72KZ8OcFZLz2P5sNgwlyoJ8Yif11oMuYs5pBQa86csA==}
+
   ip-address@10.0.1:
     resolution: {integrity: sha512-NWv9YLW4PoW2B7xtzaS3NCot75m6nK7Icdv0o3lfMceJVRfSoQwqD4wEH5rLwoKJwUiZ/rfpiVBhnaF0FK4HoA==}
     engines: {node: '>= 12'}
@@ -2712,6 +2829,15 @@ packages:
     resolution: {integrity: sha512-0KI/607xoxSToH7GjN1FfSbLoU0+btTicjsQSWQlh/hZykN8KpmMf7uYwPW3R+akZ6R/w18ZlXSHBYXiYUPO3g==}
     engines: {node: '>= 0.10'}
 
+  is-alphabetical@2.0.1:
+    resolution: {integrity: sha512-FWyyY60MeTNyeSRpkM2Iry0G9hpr7/9kD40mD/cGQEuilcZYS4okz8SN2Q6rLCJ8gbCt6fN+rC+6tMGS99LaxQ==}
+
+  is-alphanumerical@2.0.1:
+    resolution: {integrity: sha512-hmbYhX/9MUMF5uh7tOXyK/n0ZvWpad5caBA17GsC6vyuCqaWliRG5K1qS9inmUhEMaOBIW7/whAnSwveW/LtZw==}
+
+  is-decimal@2.0.1:
+    resolution: {integrity: sha512-AAB9hiomQs5DXWcRB1rqsxGUstbRroFOPPVAomNk/3XHR5JyEZChOyTWe2oayKnsSsr/kcGqF+z6yuH6HHpN0A==}
+
   is-extendable@0.1.1:
     resolution: {integrity: sha512-5BMULNob1vgFX6EjQw5izWDxrecWK9AM72rugNr0TFldMOi0fj6Jk+zeKIt0xGj4cEfQIJth4w3OKWOJ4f+AFw==}
     engines: {node: '>=0.10.0'}
@@ -2724,6 +2850,9 @@ packages:
     resolution: {integrity: sha512-xelSayHH36ZgE7ZWhli7pW34hNbNl8Ojv5KVmkJD4hBdD3th8Tfk9vYasLM+mXWOZhFkgZfxhLSnrwRr4elSSg==}
     engines: {node: '>=0.10.0'}
 
+  is-hexadecimal@2.0.1:
+    resolution: {integrity: sha512-DgZQp241c8oO6cA1SbTEWiXeoxV42vlcJxgH+B3hi1AiqqKruZR3ZGF8In3fj4+/y/7rHvlOZLZtgJ/4ttYGZg==}
+
   is-plain-obj@4.1.0:
     resolution: {integrity: sha512-+Pgi+vMuUNkJyExiMBt5IlFoMyKnr5zhJ4Uspz58WOhBF5QoIZkFyNHIbBAtHwzVAgk5RtndVNsDRN61/mmDqg==}
     engines: {node: '>=12'}
@@ -2985,6 +3114,15 @@ packages:
   mdast-util-gfm@3.1.0:
     resolution: {integrity: sha512-0ulfdQOM3ysHhCJ1p06l0b0VKlhU0wuQs3thxZQagjcjPrlFRqY215uZGHHJan9GEAXd9MbfPjFJz+qMkVR6zQ==}
 
+  mdast-util-mdx-expression@2.0.1:
+    resolution: {integrity: sha512-J6f+9hUp+ldTZqKRSg7Vw5V6MqjATc+3E4gf3CFNcuZNWD8XdyI6zQ8GqH7f8169MM6P7hMBRDVGnn7oHB9kXQ==}
+
+  mdast-util-mdx-jsx@3.2.0:
+    resolution: {integrity: sha512-lj/z8v0r6ZtsN/cGNNtemmmfoLAFZnjMbNyLzBafjzikOM+glrjNHPlf6lQDOTccj9n5b0PPihEBbhneMyGs1Q==}
+
+  mdast-util-mdxjs-esm@2.0.1:
+    resolution: {integrity: sha512-EcmOpxsZ96CvlP03NghtH1EsLtr0n9Tm4lPUJUBccV9RwUOneqSycg19n5HGzCf+10LozMRSObtVr3ee1WoHtg==}
+
   mdast-util-phrasing@4.1.0:
     resolution: {integrity: sha512-TqICwyvJJpBwvGAMZjj4J2n0X8QWp21b9l0o7eXyVJ25YNWYbJDVIyD1bZXE6WtV6RmKJVYmQAKWa0zWOABz2w==}
 
@@ -3169,6 +3307,9 @@ packages:
     resolution: {integrity: sha512-GQ2EWRpQV8/o+Aw8YqtfZZPfNRWZYkbidE9k5rpl/hC3vtHHBfGm2Ifi6qWV+coDGkrUKZAxE3Lot5kcsRlh+g==}
     engines: {node: '>=6'}
 
+  parse-entities@4.0.2:
+    resolution: {integrity: sha512-GG2AQYWoLgL877gQIKeRPGO1xF9+eG1ujIb5soS5gPvLQ1y2o8FL90w2QWNdf9I361Mpp7726c+lj3U0qK1uGw==}
+
   parse5@7.3.0:
     resolution: {integrity: sha512-IInvU7fabl34qmi9gY8XOVxhYyMyuH2xUNpb2q8/Y+7552KlejkRvqvD19nMoUW/uQGGbqNpA6Tufu5FL5BZgw==}
 
@@ -3378,6 +3519,12 @@ packages:
   react-is@17.0.2:
     resolution: {integrity: sha512-w2GsyukL62IJnlaff/nRegPQR94C/XXamvMWmSHRJ4y7Ts/4ocGRmTHvOs8PSE6pB3dWOrD/nueuU5sduBsQ4w==}
 
+  react-markdown@10.1.0:
+    resolution: {integrity: sha512-qKxVopLT/TyA6BX3Ue5NwabOsAzm0Q7kAPwq6L+wWDwisYs7R8vZ0nRXqq6rkueboxpkjvLGU9fWifiX/ZZFxQ==}
+    peerDependencies:
+      '@types/react': '>=18'
+      react: '>=18'
+
   react-number-format@5.4.4:
     resolution: {integrity: sha512-wOmoNZoOpvMminhifQYiYSTCLUDOiUbBunrMrMjA+dV52sY+vck1S4UhR6PkgnoCquvvMSeJjErXZ4qSaWCliA==}
     peerDependencies:
@@ -3441,6 +3588,9 @@ packages:
   rehype-format@5.0.1:
     resolution: {integrity: sha512-zvmVru9uB0josBVpr946OR8ui7nJEdzZobwLOOqHb/OOD88W0Vk2SqLwoVOj0fM6IPCCO6TaV9CvQvJMWwukFQ==}
 
+  rehype-highlight@7.0.2:
+    resolution: {integrity: sha512-k158pK7wdC2qL3M5NcZROZ2tR/l7zOzjxXd5VGdcfIyoijjQqpHd3JKtYSBDpDZ38UI2WJWuFAtkMDxmx5kstA==}
+
   rehype-minify-whitespace@6.0.2:
     resolution: {integrity: sha512-Zk0pyQ06A3Lyxhe9vGtOtzz3Z0+qZ5+7icZ/PL/2x1SHPbKao5oB/g/rlc6BCTajqBb33JcOe71Ye1oFsuYbnw==}
 
@@ -3581,6 +3731,15 @@ packages:
     resolution: {integrity: sha512-6fPc+R4ihwqP6N/aIv2f1gMH8lOVtWQHoqC4yK6oSDVVocumAsfCqjkXnqiYMhmMwS/mEHLp7Vehlt3ql6lEig==}
     engines: {node: '>=8'}
 
+  style-mod@4.1.3:
+    resolution: {integrity: sha512-i/n8VsZydrugj3Iuzll8+x/00GH2vnYsk1eomD8QiRrSAeW6ItbCQDtfXCeJHd0iwiNagqjQkvpvREEPtW3IoQ==}
+
+  style-to-js@1.1.21:
+    resolution: {integrity: sha512-RjQetxJrrUJLQPHbLku6U/ocGtzyjbJMP9lCNK7Ag0CNh690nSH8woqWH9u16nMjYBAok+i7JO1NP2pOy8IsPQ==}
+
+  style-to-object@1.0.14:
+    resolution: {integrity: sha512-LIN7rULI0jBscWQYaSswptyderlarFkjQ+t79nzty8tcIAceVomEVlLzH5VP4Cmsv6MtKhs7qaAiwlcp+Mgaxw==}
+
   supports-color@7.2.0:
     resolution: {integrity: sha512-qpCAvRl9stuOHveKsn7HncJRvv501qIacKzQlO/+Lwxc9+0q2wLyv4Dfvt80/DPn2pqOBsJdDiogXGR9+OvwRw==}
     engines: {node: '>=8'}
@@ -4220,6 +4379,96 @@ snapshots:
       - sugar-high
       - supports-color
 
+  '@codemirror/autocomplete@6.20.1':
+    dependencies:
+      '@codemirror/language': 6.12.2
+      '@codemirror/state': 6.5.4
+      '@codemirror/view': 6.39.16
+      '@lezer/common': 1.5.1
+
+  '@codemirror/commands@6.10.2':
+    dependencies:
+      '@codemirror/language': 6.12.2
+      '@codemirror/state': 6.5.4
+      '@codemirror/view': 6.39.16
+      '@lezer/common': 1.5.1
+
+  '@codemirror/lang-css@6.3.1':
+    dependencies:
+      '@codemirror/autocomplete': 6.20.1
+      '@codemirror/language': 6.12.2
+      '@codemirror/state': 6.5.4
+      '@lezer/common': 1.5.1
+      '@lezer/css': 1.3.1
+
+  '@codemirror/lang-html@6.4.11':
+    dependencies:
+      '@codemirror/autocomplete': 6.20.1
+      '@codemirror/lang-css': 6.3.1
+      '@codemirror/lang-javascript': 6.2.5
+      '@codemirror/language': 6.12.2
+      '@codemirror/state': 6.5.4
+      '@codemirror/view': 6.39.16
+      '@lezer/common': 1.5.1
+      '@lezer/css': 1.3.1
+      '@lezer/html': 1.3.13
+
+  '@codemirror/lang-javascript@6.2.5':
+    dependencies:
+      '@codemirror/autocomplete': 6.20.1
+      '@codemirror/language': 6.12.2
+      '@codemirror/lint': 6.9.5
+      '@codemirror/state': 6.5.4
+      '@codemirror/view': 6.39.16
+      '@lezer/common': 1.5.1
+      '@lezer/javascript': 1.5.4
+
+  '@codemirror/lang-markdown@6.5.0':
+    dependencies:
+      '@codemirror/autocomplete': 6.20.1
+      '@codemirror/lang-html': 6.4.11
+      '@codemirror/language': 6.12.2
+      '@codemirror/state': 6.5.4
+      '@codemirror/view': 6.39.16
+      '@lezer/common': 1.5.1
+      '@lezer/markdown': 1.6.3
+
+  '@codemirror/lang-yaml@6.1.2':
+    dependencies:
+      '@codemirror/autocomplete': 6.20.1
+      '@codemirror/language': 6.12.2
+      '@codemirror/state': 6.5.4
+      '@lezer/common': 1.5.1
+      '@lezer/highlight': 1.2.3
+      '@lezer/lr': 1.4.8
+      '@lezer/yaml': 1.0.4
+
+  '@codemirror/language@6.12.2':
+    dependencies:
+      '@codemirror/state': 6.5.4
+      '@codemirror/view': 6.39.16
+      '@lezer/common': 1.5.1
+      '@lezer/highlight': 1.2.3
+      '@lezer/lr': 1.4.8
+      style-mod: 4.1.3
+
+  '@codemirror/lint@6.9.5':
+    dependencies:
+      '@codemirror/state': 6.5.4
+      '@codemirror/view': 6.39.16
+      crelt: 1.0.6
+
+  '@codemirror/state@6.5.4':
+    dependencies:
+      '@marijn/find-cluster-break': 1.0.2
+
+  '@codemirror/view@6.39.16':
+    dependencies:
+      '@codemirror/state': 6.5.4
+      crelt: 1.0.6
+      style-mod: 4.1.3
+      w3c-keyname: 2.2.8
+
   '@csstools/color-helpers@6.0.1': {}
 
   '@csstools/css-calc@3.1.1(@csstools/css-parser-algorithms@4.0.0(@csstools/css-tokenizer@4.0.0))(@csstools/css-tokenizer@4.0.0)':
@@ -4464,6 +4713,45 @@ snapshots:
       '@jridgewell/resolve-uri': 3.1.2
       '@jridgewell/sourcemap-codec': 1.5.5
 
+  '@lezer/common@1.5.1': {}
+
+  '@lezer/css@1.3.1':
+    dependencies:
+      '@lezer/common': 1.5.1
+      '@lezer/highlight': 1.2.3
+      '@lezer/lr': 1.4.8
+
+  '@lezer/highlight@1.2.3':
+    dependencies:
+      '@lezer/common': 1.5.1
+
+  '@lezer/html@1.3.13':
+    dependencies:
+      '@lezer/common': 1.5.1
+      '@lezer/highlight': 1.2.3
+      '@lezer/lr': 1.4.8
+
+  '@lezer/javascript@1.5.4':
+    dependencies:
+      '@lezer/common': 1.5.1
+      '@lezer/highlight': 1.2.3
+      '@lezer/lr': 1.4.8
+
+  '@lezer/lr@1.4.8':
+    dependencies:
+      '@lezer/common': 1.5.1
+
+  '@lezer/markdown@1.6.3':
+    dependencies:
+      '@lezer/common': 1.5.1
+      '@lezer/highlight': 1.2.3
+
+  '@lezer/yaml@1.0.4':
+    dependencies:
+      '@lezer/common': 1.5.1
+      '@lezer/highlight': 1.2.3
+      '@lezer/lr': 1.4.8
+
   '@mantine/core@8.3.14(@mantine/hooks@8.3.14(react@19.2.4))(@types/react@19.2.14)(react-dom@19.2.4(react@19.2.4))(react@19.2.4)':
     dependencies:
       '@floating-ui/react': 0.27.17(react-dom@19.2.4(react@19.2.4))(react@19.2.4)
@@ -4486,6 +4774,8 @@ snapshots:
     dependencies:
       react: 19.2.4
 
+  '@marijn/find-cluster-break@1.0.2': {}
+
   '@modelcontextprotocol/sdk@1.27.1(zod@4.3.6)':
     dependencies:
       '@hono/node-server': 1.19.9(hono@4.12.3)
@@ -5683,6 +5973,10 @@ snapshots:
 
   '@types/deep-eql@4.0.2': {}
 
+  '@types/estree-jsx@1.0.5':
+    dependencies:
+      '@types/estree': 1.0.8
+
   '@types/estree@1.0.8': {}
 
   '@types/hast@3.0.4':
@@ -5718,12 +6012,18 @@ snapshots:
     dependencies:
       csstype: 3.2.3
 
+  '@types/unist@2.0.11': {}
+
   '@types/unist@3.0.3': {}
 
   '@types/use-sync-external-store@0.0.6': {}
 
   '@types/use-sync-external-store@1.5.0': {}
 
+  '@types/ws@8.18.1':
+    dependencies:
+      '@types/node': 24.10.13
+
   '@typescript-eslint/eslint-plugin@8.55.0(@typescript-eslint/parser@8.55.0(eslint@9.39.2(jiti@2.6.1))(typescript@5.9.3))(eslint@9.39.2(jiti@2.6.1))(typescript@5.9.3)':
     dependencies:
       '@eslint-community/regexpp': 4.12.2
@@ -6017,6 +6317,8 @@ snapshots:
 
   character-entities@2.0.2: {}
 
+  character-reference-invalid@2.0.1: {}
+
   class-variance-authority@0.7.1:
     dependencies:
       clsx: 2.1.1
@@ -6266,6 +6568,8 @@ snapshots:
 
   estraverse@5.3.0: {}
 
+  estree-util-is-identifier-name@3.0.0: {}
+
   estree-walker@3.0.3:
     dependencies:
       '@types/estree': 1.0.8
@@ -6515,6 +6819,26 @@ snapshots:
       stringify-entities: 4.0.4
       zwitch: 2.0.4
 
+  hast-util-to-jsx-runtime@2.3.6:
+    dependencies:
+      '@types/estree': 1.0.8
+      '@types/hast': 3.0.4
+      '@types/unist': 3.0.3
+      comma-separated-tokens: 2.0.3
+      devlop: 1.1.0
+      estree-util-is-identifier-name: 3.0.0
+      hast-util-whitespace: 3.0.0
+      mdast-util-mdx-expression: 2.0.1
+      mdast-util-mdx-jsx: 3.2.0
+      mdast-util-mdxjs-esm: 2.0.1
+      property-information: 7.1.0
+      space-separated-tokens: 2.0.2
+      style-to-js: 1.1.21
+      unist-util-position: 5.0.0
+      vfile-message: 4.0.3
+    transitivePeerDependencies:
+      - supports-color
+
   hast-util-to-mdast@10.1.2:
     dependencies:
       '@types/hast': 3.0.4
@@ -6569,6 +6893,8 @@ snapshots:
 
   html-escaper@2.0.2: {}
 
+  html-url-attributes@3.0.1: {}
+
   html-void-elements@3.0.0: {}
 
   html-whitespace-sensitive-tag-names@3.0.1: {}
@@ -6616,10 +6942,21 @@ snapshots:
 
   inherits@2.0.4: {}
 
+  inline-style-parser@0.2.7: {}
+
   ip-address@10.0.1: {}
 
   ipaddr.js@1.9.1: {}
 
+  is-alphabetical@2.0.1: {}
+
+  is-alphanumerical@2.0.1:
+    dependencies:
+      is-alphabetical: 2.0.1
+      is-decimal: 2.0.1
+
+  is-decimal@2.0.1: {}
+
   is-extendable@0.1.1: {}
 
   is-extglob@2.1.1: {}
@@ -6628,6 +6965,8 @@ snapshots:
     dependencies:
       is-extglob: 2.1.1
 
+  is-hexadecimal@2.0.1: {}
+
   is-plain-obj@4.1.0: {}
 
   is-potential-custom-element-name@1.0.1: {}
@@ -6921,6 +7260,45 @@ snapshots:
     transitivePeerDependencies:
       - supports-color
 
+  mdast-util-mdx-expression@2.0.1:
+    dependencies:
+      '@types/estree-jsx': 1.0.5
+      '@types/hast': 3.0.4
+      '@types/mdast': 4.0.4
+      devlop: 1.1.0
+      mdast-util-from-markdown: 2.0.2
+      mdast-util-to-markdown: 2.1.2
+    transitivePeerDependencies:
+      - supports-color
+
+  mdast-util-mdx-jsx@3.2.0:
+    dependencies:
+      '@types/estree-jsx': 1.0.5
+      '@types/hast': 3.0.4
+      '@types/mdast': 4.0.4
+      '@types/unist': 3.0.3
+      ccount: 2.0.1
+      devlop: 1.1.0
+      mdast-util-from-markdown: 2.0.2
+      mdast-util-to-markdown: 2.1.2
+      parse-entities: 4.0.2
+      stringify-entities: 4.0.4
+      unist-util-stringify-position: 4.0.0
+      vfile-message: 4.0.3
+    transitivePeerDependencies:
+      - supports-color
+
+  mdast-util-mdxjs-esm@2.0.1:
+    dependencies:
+      '@types/estree-jsx': 1.0.5
+      '@types/hast': 3.0.4
+      '@types/mdast': 4.0.4
+      devlop: 1.1.0
+      mdast-util-from-markdown: 2.0.2
+      mdast-util-to-markdown: 2.1.2
+    transitivePeerDependencies:
+      - supports-color
+
   mdast-util-phrasing@4.1.0:
     dependencies:
       '@types/mdast': 4.0.4
@@ -7216,6 +7594,16 @@ snapshots:
     dependencies:
       callsites: 3.1.0
 
+  parse-entities@4.0.2:
+    dependencies:
+      '@types/unist': 2.0.11
+      character-entities-legacy: 3.0.0
+      character-reference-invalid: 2.0.1
+      decode-named-character-reference: 1.3.0
+      is-alphanumerical: 2.0.1
+      is-decimal: 2.0.1
+      is-hexadecimal: 2.0.1
+
   parse5@7.3.0:
     dependencies:
       entities: 6.0.1
@@ -7481,6 +7869,24 @@ snapshots:
 
   react-is@17.0.2: {}
 
+  react-markdown@10.1.0(@types/react@19.2.14)(react@19.2.4):
+    dependencies:
+      '@types/hast': 3.0.4
+      '@types/mdast': 4.0.4
+      '@types/react': 19.2.14
+      devlop: 1.1.0
+      hast-util-to-jsx-runtime: 2.3.6
+      html-url-attributes: 3.0.1
+      mdast-util-to-hast: 13.2.1
+      react: 19.2.4
+      remark-parse: 11.0.0
+      remark-rehype: 11.1.2
+      unified: 11.0.5
+      unist-util-visit: 5.1.0
+      vfile: 6.0.3
+    transitivePeerDependencies:
+      - supports-color
+
   react-number-format@5.4.4(react-dom@19.2.4(react@19.2.4))(react@19.2.4):
     dependencies:
       react: 19.2.4
@@ -7541,6 +7947,14 @@ snapshots:
       '@types/hast': 3.0.4
       hast-util-format: 1.1.0
 
+  rehype-highlight@7.0.2:
+    dependencies:
+      '@types/hast': 3.0.4
+      hast-util-to-text: 4.0.2
+      lowlight: 3.3.0
+      unist-util-visit: 5.1.0
+      vfile: 6.0.3
+
   rehype-minify-whitespace@6.0.2:
     dependencies:
       '@types/hast': 3.0.4
@@ -7752,6 +8166,16 @@ snapshots:
 
   strip-json-comments@3.1.1: {}
 
+  style-mod@4.1.3: {}
+
+  style-to-js@1.1.21:
+    dependencies:
+      style-to-object: 1.0.14
+
+  style-to-object@1.0.14:
+    dependencies:
+      inline-style-parser: 0.2.7
+
   supports-color@7.2.0:
     dependencies:
       has-flag: 4.0.0

scripts/bundle-qmd.sh

@@ -0,0 +1,155 @@
+#!/usr/bin/env bash
+# Bundle qmd into a self-contained directory for Tauri resource embedding.
+#
+# Output: src-tauri/resources/qmd/
+#   qmd                                  — compiled standalone binary
+#   node_modules/sqlite-vec/             — JS shim for sqlite-vec
+#   node_modules/sqlite-vec-darwin-arm64/ — native .dylib (arm64)
+#   node_modules/sqlite-vec-darwin-x64/  — native .dylib (x64)
+#   node_modules/node-llama-cpp/         — stub (keyword search only)
+set -euo pipefail
+
+SCRIPT_DIR="$(cd "$(dirname "$0")" && pwd)"
+ROOT="$SCRIPT_DIR/.."
+OUT="$ROOT/src-tauri/resources/qmd"
+
+# ---------- locate tools ----------
+find_bun() {
+  for c in \
+    "$HOME/.bun/bin/bun" \
+    "/opt/homebrew/bin/bun" \
+    "/usr/local/bin/bun"; do
+    [[ -x "$c" ]] && { echo "$c"; return 0; }
+  done
+  command -v bun 2>/dev/null && return 0
+  return 1
+}
+
+BUN=$(find_bun) || { echo "ERROR: bun not found — install from https://bun.sh" >&2; exit 1; }
+echo "Using bun: $BUN"
+
+# ---------- locate qmd source ----------
+# Prefer bundled source in tools/qmd/ (works in CI and dev),
+# then fall back to globally installed qmd on dev machines.
+QMD_SRC=""
+for c in \
+  "$ROOT/tools/qmd" \
+  "$HOME/.bun/install/global/node_modules/qmd" \
+  "/opt/homebrew/lib/node_modules/qmd" \
+  "/usr/local/lib/node_modules/qmd"; do
+  [[ -f "$c/src/qmd.ts" ]] && { QMD_SRC="$c"; break; }
+done
+
+[[ -n "$QMD_SRC" ]] || { echo "ERROR: qmd source not found. tools/qmd/ is missing or incomplete." >&2; exit 1; }
+echo "Using qmd source: $QMD_SRC"
+
+# Install qmd dependencies if needed (for CI where node_modules don't exist yet)
+if [[ ! -d "$QMD_SRC/node_modules" ]]; then
+  echo "Installing qmd dependencies..."
+  (cd "$QMD_SRC" && "$BUN" install --frozen-lockfile)
+fi
+
+# ---------- compile ----------
+echo "Compiling qmd with bun build --compile..."
+mkdir -p "$OUT"
+
+(cd "$QMD_SRC" && "$BUN" build --compile \
+  "src/qmd.ts" \
+  --outfile "$OUT/qmd" \
+  --external node-llama-cpp \
+  --external sqlite-vec \
+  --external sqlite-vec-darwin-arm64 \
+  --external sqlite-vec-darwin-x64)
+
+chmod +x "$OUT/qmd"
+
+# ---------- bundle sqlite-vec ----------
+echo "Bundling sqlite-vec native extensions..."
+
+# Find sqlite-vec packages — prefer node_modules in QMD_SRC (after bun install),
+# fall back to bun global cache for dev machines.
+NM="$QMD_SRC/node_modules"
+
+find_pkg() {
+  local pkg="$1"
+  # Check node_modules from bun install in QMD_SRC first
+  if [[ -d "$NM/$pkg" ]]; then
+    echo "$NM/$pkg"; return 0
+  fi
+  # Fall back to bun global cache
+  local cache_dir
+  cache_dir=$(find "$HOME/.bun/install/cache" -maxdepth 1 -name "${pkg}@*" -type d 2>/dev/null | head -1)
+  [[ -n "$cache_dir" ]] && echo "$cache_dir" && return 0
+  return 1
+}
+
+# sqlite-vec JS shim
+SQLVEC_DIR=$(find_pkg "sqlite-vec") || { echo "ERROR: sqlite-vec not found" >&2; exit 1; }
+mkdir -p "$OUT/node_modules/sqlite-vec"
+cp "$SQLVEC_DIR/index.mjs" "$OUT/node_modules/sqlite-vec/index.mjs"
+cp "$SQLVEC_DIR/package.json" "$OUT/node_modules/sqlite-vec/package.json"
+[[ -f "$SQLVEC_DIR/index.cjs" ]] && cp "$SQLVEC_DIR/index.cjs" "$OUT/node_modules/sqlite-vec/index.cjs"
+
+# sqlite-vec-darwin-arm64
+ARM64_DIR=$(find_pkg "sqlite-vec-darwin-arm64") || true
+if [[ -n "$ARM64_DIR" ]]; then
+  mkdir -p "$OUT/node_modules/sqlite-vec-darwin-arm64"
+  cp "$ARM64_DIR/vec0.dylib" "$OUT/node_modules/sqlite-vec-darwin-arm64/vec0.dylib"
+  cp "$ARM64_DIR/package.json" "$OUT/node_modules/sqlite-vec-darwin-arm64/package.json"
+  echo "  ✓ arm64 dylib"
+fi
+
+# sqlite-vec-darwin-x64
+X64_DIR=$(find_pkg "sqlite-vec-darwin-x64") || true
+if [[ -n "$X64_DIR" ]]; then
+  mkdir -p "$OUT/node_modules/sqlite-vec-darwin-x64"
+  cp "$X64_DIR/vec0.dylib" "$OUT/node_modules/sqlite-vec-darwin-x64/vec0.dylib"
+  cp "$X64_DIR/package.json" "$OUT/node_modules/sqlite-vec-darwin-x64/package.json"
+  echo "  ✓ x64 dylib"
+fi
+
+# ---------- stub node-llama-cpp ----------
+echo "Creating node-llama-cpp stub (keyword search only)..."
+mkdir -p "$OUT/node_modules/node-llama-cpp"
+
+cat > "$OUT/node_modules/node-llama-cpp/package.json" << 'PJSON'
+{"name":"node-llama-cpp","version":"0.0.0-stub","type":"module","main":"index.js"}
+PJSON
+
+cat > "$OUT/node_modules/node-llama-cpp/index.js" << 'STUB'
+// Stub: node-llama-cpp not bundled — semantic search unavailable, keyword search works.
+const unavailable = (name) => (...args) => {
+  throw new Error(`${name}() unavailable: node-llama-cpp not bundled. Keyword search still works.`);
+};
+export const getLlama = unavailable("getLlama");
+export const resolveModelFile = unavailable("resolveModelFile");
+export class LlamaChatSession {
+  constructor() { throw new Error("LlamaChatSession unavailable"); }
+}
+export const LlamaLogLevel = { Error: 0, Warn: 1, Info: 2, Debug: 3 };
+STUB
+
+# ---------- code signing (macOS) ----------
+# In CI (APPLE_SIGNING_IDENTITY set): sign with Developer ID + hardened runtime (required for notarization)
+# In dev (no identity): ad-hoc sign to remove quarantine
+if [[ "$(uname)" == "Darwin" ]] && command -v codesign &>/dev/null; then
+  SIGN_ID="${APPLE_SIGNING_IDENTITY:--}"
+  if [[ "$SIGN_ID" != "-" ]]; then
+    echo "Signing bundled binaries with Developer ID: $SIGN_ID"
+    SIGN_OPTS=(--force --sign "$SIGN_ID" --options runtime --timestamp)
+  else
+    echo "Ad-hoc signing bundled binaries (dev mode)..."
+    SIGN_OPTS=(--force --sign -)
+  fi
+  codesign "${SIGN_OPTS[@]}" "$OUT/qmd" 2>/dev/null && echo "  ✓ qmd signed" || echo "  ⚠ qmd signing failed (non-fatal)"
+  while IFS= read -r -d '' dylib; do
+    codesign "${SIGN_OPTS[@]}" "$dylib" 2>/dev/null && echo "  ✓ $(basename "$dylib") signed" || echo "  ⚠ $(basename "$dylib") signing failed (non-fatal)"
+  done < <(find "$OUT/node_modules" -name "*.dylib" -print0)
+fi
+
+# ---------- summary ----------
+echo ""
+echo "qmd bundled → $OUT/"
+du -sh "$OUT/qmd"
+du -sh "$OUT/node_modules"
+echo "Done."

src-tauri/.gitignore

@@ -2,3 +2,7 @@
 # will have compiled files and executables
 /target/
 /gen/schemas
+
+# Generated by build scripts
+/resources/mcp-server/
+/resources/qmd/

src-tauri/build.rs

@@ -1,14 +1,13 @@
 fn main() {
-    let count = std::process::Command::new("git")
-        .args(["rev-list", "--count", "HEAD"])
-        .output()
-        .ok()
-        .filter(|o| o.status.success())
-        .and_then(|o| String::from_utf8(o.stdout).ok())
-        .map(|s| s.trim().to_string())
-        .unwrap_or_else(|| "DEV".to_string());
-
-    println!("cargo:rustc-env=BUILD_NUMBER={}", count);
-
+    // Ensure resource directories exist for the Tauri build.
+    // These are gitignored and populated by scripts (bundle-qmd.sh, bundle-mcp-server.mjs).
+    // Without a placeholder, `tauri build` / `cargo test` fails if the scripts haven't run.
+    for dir in ["resources/qmd", "resources/mcp-server"] {
+        let path = std::path::Path::new(dir);
+        if !path.exists() {
+            std::fs::create_dir_all(path).ok();
+            std::fs::write(path.join(".placeholder"), "").ok();
+        }
+    }
     tauri_build::build()
 }

src-tauri/src/claude_cli.rs

@@ -1,4 +1,5 @@
 use serde::{Deserialize, Serialize};
+use std::collections::HashMap;
 use std::io::BufRead;
 use std::path::PathBuf;
 use std::process::{Command, Stdio};
@@ -18,10 +19,21 @@ pub enum ClaudeStreamEvent {
     Init { session_id: String },
     /// Incremental text chunk.
     TextDelta { text: String },
+    /// Incremental thinking/reasoning chunk.
+    ThinkingDelta { text: String },
     /// A tool call started (agent mode only).
-    ToolStart { tool_name: String, tool_id: String },
+    ToolStart {
+        tool_name: String,
+        tool_id: String,
+        #[serde(skip_serializing_if = "Option::is_none")]
+        input: Option<String>,
+    },
     /// A tool call finished (agent mode only).
-    ToolDone { tool_id: String },
+    ToolDone {
+        tool_id: String,
+        #[serde(skip_serializing_if = "Option::is_none")]
+        output: Option<String>,
+    },
     /// Final result text + session ID.
     Result { text: String, session_id: String },
     /// Something went wrong.
@@ -117,7 +129,7 @@ where
 {
     let bin = find_claude_binary()?;
     let args = build_chat_args(&req);
-    run_claude_subprocess(&bin, &args, &mut emit)
+    run_claude_subprocess(&bin, &args, None, &mut emit)
 }
 
 /// Build CLI arguments for a chat stream request.
@@ -148,17 +160,18 @@ fn build_chat_args(req: &ChatStreamRequest) -> Vec<String> {
     args
 }
 
-/// Spawn `claude -p` with MCP vault tools for an agent task and stream events.
+/// Spawn `claude -p` with full tool access and MCP vault tools for an agent task.
 pub fn run_agent_stream<F>(req: AgentStreamRequest, mut emit: F) -> Result<String, String>
 where
     F: FnMut(ClaudeStreamEvent),
 {
     let bin = find_claude_binary()?;
     let args = build_agent_args(&req)?;
-    run_claude_subprocess(&bin, &args, &mut emit)
+    run_claude_subprocess(&bin, &args, Some(&req.vault_path), &mut emit)
 }
 
 /// Build CLI arguments for an agent stream request.
+/// Native tools (bash, read, write, edit) are enabled by default — no `--tools ""`.
 fn build_agent_args(req: &AgentStreamRequest) -> Result<Vec<String>, String> {
     let mcp_config = build_mcp_config(&req.vault_path)?;
 
@@ -169,8 +182,6 @@ fn build_agent_args(req: &AgentStreamRequest) -> Result<Vec<String>, String> {
         "stream-json".into(),
         "--verbose".into(),
         "--include-partial-messages".into(),
-        "--tools".into(),
-        String::new(), // disable built-in tools; MCP tools remain
         "--mcp-config".into(),
         mcp_config,
         "--dangerously-skip-permissions".into(),
@@ -207,23 +218,46 @@ fn build_mcp_config(vault_path: &str) -> Result<String, String> {
     serde_json::to_string(&config).map_err(|e| format!("Failed to serialise MCP config: {e}"))
 }
 
+/// Mutable state accumulated across the JSON stream for a single subprocess.
+struct StreamState {
+    session_id: String,
+    /// Accumulates `input_json_delta` chunks keyed by tool_use id.
+    tool_inputs: HashMap<String, String>,
+    /// The tool_use id of the block currently being streamed.
+    current_tool_id: Option<String>,
+}
+
 /// Core subprocess runner shared by chat and agent modes.
-fn run_claude_subprocess<F>(bin: &PathBuf, args: &[String], emit: &mut F) -> Result<String, String>
+/// When `cwd` is `Some`, the subprocess starts with that working directory.
+fn run_claude_subprocess<F>(
+    bin: &PathBuf,
+    args: &[String],
+    cwd: Option<&str>,
+    emit: &mut F,
+) -> Result<String, String>
 where
     F: FnMut(ClaudeStreamEvent),
 {
-    let mut child = Command::new(bin)
-        .args(args)
+    let mut cmd = Command::new(bin);
+    cmd.args(args)
         .env_remove("CLAUDECODE") // prevent "nested session" guard
         .stdout(Stdio::piped())
-        .stderr(Stdio::piped())
+        .stderr(Stdio::piped());
+    if let Some(dir) = cwd {
+        cmd.current_dir(dir);
+    }
+    let mut child = cmd
         .spawn()
         .map_err(|e| format!("Failed to spawn claude: {e}"))?;
 
     let stdout = child.stdout.take().ok_or("No stdout handle")?;
     let reader = std::io::BufReader::new(stdout);
 
-    let mut session_id = String::new();
+    let mut state = StreamState {
+        session_id: String::new(),
+        tool_inputs: HashMap::new(),
+        current_tool_id: None,
+    };
 
     for line in reader.lines() {
         let line = match line {
@@ -245,7 +279,7 @@ where
             Err(_) => continue, // skip non-JSON lines
         };
 
-        dispatch_event(&json, &mut session_id, emit);
+        dispatch_event(&json, &mut state, emit);
     }
 
     // Read stderr for potential error messages.
@@ -257,7 +291,7 @@ where
 
     let status = child.wait().map_err(|e| format!("Wait failed: {e}"))?;
 
-    if !status.success() && session_id.is_empty() {
+    if !status.success() && state.session_id.is_empty() {
         let msg = if stderr_output.contains("not logged in")
             || stderr_output.contains("authentication")
             || stderr_output.contains("auth")
@@ -273,11 +307,11 @@ where
 
     emit(ClaudeStreamEvent::Done);
 
-    Ok(session_id)
+    Ok(state.session_id)
 }
 
 /// Parse a single JSON line from the stream and emit the appropriate event.
-fn dispatch_event<F>(json: &serde_json::Value, session_id: &mut String, emit: &mut F)
+fn dispatch_event<F>(json: &serde_json::Value, state: &mut StreamState, emit: &mut F)
 where
     F: FnMut(ClaudeStreamEvent),
 {
@@ -287,7 +321,7 @@ where
         // --- System init → capture session_id ---
         "system" if json["subtype"].as_str() == Some("init") => {
             if let Some(sid) = json["session_id"].as_str() {
-                *session_id = sid.to_string();
+                state.session_id = sid.to_string();
                 emit(ClaudeStreamEvent::Init {
                     session_id: sid.to_string(),
                 });
@@ -296,7 +330,7 @@ where
 
         // --- Streaming partial events (text deltas, tool_use starts) ---
         "stream_event" => {
-            dispatch_stream_event(json, emit);
+            dispatch_stream_event(json, state, emit);
         }
 
         // --- Tool progress (agent mode) ---
@@ -307,6 +341,18 @@ where
                 emit(ClaudeStreamEvent::ToolStart {
                     tool_name: name.to_string(),
                     tool_id: id.to_string(),
+                    input: None,
+                });
+            }
+        }
+
+        // --- Tool result (agent mode) ---
+        "tool_result" => {
+            if let Some(id) = json["tool_use_id"].as_str() {
+                let output = extract_tool_result_text(json);
+                emit(ClaudeStreamEvent::ToolDone {
+                    tool_id: id.to_string(),
+                    output,
                 });
             }
         }
@@ -315,7 +361,7 @@ where
         "result" => {
             let sid = json["session_id"].as_str().unwrap_or("").to_string();
             if !sid.is_empty() {
-                *session_id = sid.clone();
+                state.session_id = sid.clone();
             }
             let text = json["result"].as_str().unwrap_or("").to_string();
             emit(ClaudeStreamEvent::Result {
@@ -332,9 +378,11 @@ where
                         if let (Some(id), Some(name)) =
                             (block["id"].as_str(), block["name"].as_str())
                         {
+                            let input = format_tool_input(&block["input"], state, id);
                             emit(ClaudeStreamEvent::ToolStart {
                                 tool_name: name.to_string(),
                                 tool_id: id.to_string(),
+                                input,
                             });
                         }
                     }
@@ -347,7 +395,7 @@ where
 }
 
 /// Handle a `stream_event` (partial assistant message).
-fn dispatch_stream_event<F>(json: &serde_json::Value, emit: &mut F)
+fn dispatch_stream_event<F>(json: &serde_json::Value, state: &mut StreamState, emit: &mut F)
 where
     F: FnMut(ClaudeStreamEvent),
 {
@@ -357,29 +405,91 @@ where
     match event_type {
         "content_block_delta" => {
             let delta = &event["delta"];
-            if delta["type"].as_str() == Some("text_delta") {
-                if let Some(text) = delta["text"].as_str() {
-                    emit(ClaudeStreamEvent::TextDelta {
-                        text: text.to_string(),
-                    });
+            match delta["type"].as_str() {
+                Some("text_delta") => {
+                    if let Some(text) = delta["text"].as_str() {
+                        emit(ClaudeStreamEvent::TextDelta {
+                            text: text.to_string(),
+                        });
+                    }
                 }
+                Some("thinking_delta") => {
+                    if let Some(text) = delta["thinking"].as_str() {
+                        emit(ClaudeStreamEvent::ThinkingDelta {
+                            text: text.to_string(),
+                        });
+                    }
+                }
+                Some("input_json_delta") => {
+                    if let (Some(partial), Some(ref tid)) =
+                        (delta["partial_json"].as_str(), &state.current_tool_id)
+                    {
+                        state
+                            .tool_inputs
+                            .entry(tid.clone())
+                            .or_default()
+                            .push_str(partial);
+                    }
+                }
+                _ => {}
             }
         }
         "content_block_start" => {
             let block = &event["content_block"];
             if block["type"].as_str() == Some("tool_use") {
                 if let (Some(id), Some(name)) = (block["id"].as_str(), block["name"].as_str()) {
+                    state.current_tool_id = Some(id.to_string());
+                    state.tool_inputs.entry(id.to_string()).or_default();
                     emit(ClaudeStreamEvent::ToolStart {
                         tool_name: name.to_string(),
                         tool_id: id.to_string(),
+                        input: None,
                     });
                 }
             }
         }
+        "content_block_stop" => {
+            state.current_tool_id = None;
+        }
         _ => {}
     }
 }
 
+/// Build the tool input string, preferring accumulated delta chunks over the
+/// block's `input` field (which may be empty at stream start).
+fn format_tool_input(
+    block_input: &serde_json::Value,
+    state: &StreamState,
+    tool_id: &str,
+) -> Option<String> {
+    if let Some(accumulated) = state.tool_inputs.get(tool_id) {
+        if !accumulated.is_empty() {
+            return Some(accumulated.clone());
+        }
+    }
+    if !block_input.is_null() && block_input.as_object().is_some_and(|o| !o.is_empty()) {
+        return Some(block_input.to_string());
+    }
+    None
+}
+
+/// Extract displayable text from a `tool_result` event.
+fn extract_tool_result_text(json: &serde_json::Value) -> Option<String> {
+    // String content field
+    if let Some(s) = json["content"].as_str() {
+        return Some(s.to_string());
+    }
+    // Array of content blocks (Claude format)
+    if let Some(arr) = json["content"].as_array() {
+        let texts: Vec<&str> = arr.iter().filter_map(|b| b["text"].as_str()).collect();
+        if !texts.is_empty() {
+            return Some(texts.join("\n"));
+        }
+    }
+    // Fallback: "output" field
+    json["output"].as_str().map(|s| s.to_string())
+}
+
 #[cfg(test)]
 mod tests {
     use super::*;
@@ -408,12 +518,20 @@ mod tests {
 
     // --- dispatch_event / dispatch_stream_event ---
 
+    fn new_state() -> StreamState {
+        StreamState {
+            session_id: String::new(),
+            tool_inputs: HashMap::new(),
+            current_tool_id: None,
+        }
+    }
+
     /// Run dispatch_event on the given JSON and return (session_id, events).
     fn run_dispatch(json: serde_json::Value) -> (String, Vec<ClaudeStreamEvent>) {
-        let mut sid = String::new();
+        let mut state = new_state();
         let mut events = vec![];
-        dispatch_event(&json, &mut sid, &mut |e| events.push(e));
-        (sid, events)
+        dispatch_event(&json, &mut state, &mut |e| events.push(e));
+        (state.session_id, events)
     }
 
     /// Run dispatch_event with a pre-set session_id.
@@ -421,10 +539,23 @@ mod tests {
         json: serde_json::Value,
         initial_sid: &str,
     ) -> (String, Vec<ClaudeStreamEvent>) {
-        let mut sid = initial_sid.to_string();
+        let mut state = new_state();
+        state.session_id = initial_sid.to_string();
         let mut events = vec![];
-        dispatch_event(&json, &mut sid, &mut |e| events.push(e));
-        (sid, events)
+        dispatch_event(&json, &mut state, &mut |e| events.push(e));
+        (state.session_id, events)
+    }
+
+    /// Run multiple dispatch_event calls sharing state (for multi-event sequences).
+    fn run_dispatch_sequence(
+        events_json: Vec<serde_json::Value>,
+    ) -> (StreamState, Vec<ClaudeStreamEvent>) {
+        let mut state = new_state();
+        let mut events = vec![];
+        for json in &events_json {
+            dispatch_event(json, &mut state, &mut |e| events.push(e));
+        }
+        (state, events)
     }
 
     #[test]
@@ -468,7 +599,7 @@ mod tests {
             "event": { "type": "content_block_start", "index": 1, "content_block": { "type": "tool_use", "id": "tool_abc", "name": "read_note", "input": {} } }
         }));
         assert!(
-            matches!(&events[0], ClaudeStreamEvent::ToolStart { tool_name, tool_id } if tool_name == "read_note" && tool_id == "tool_abc")
+            matches!(&events[0], ClaudeStreamEvent::ToolStart { tool_name, tool_id, .. } if tool_name == "read_note" && tool_id == "tool_abc")
         );
     }
 
@@ -501,7 +632,7 @@ mod tests {
             "type": "tool_progress", "tool_name": "search_notes", "tool_use_id": "tool_xyz"
         }));
         assert!(
-            matches!(&events[0], ClaudeStreamEvent::ToolStart { tool_name, tool_id } if tool_name == "search_notes" && tool_id == "tool_xyz")
+            matches!(&events[0], ClaudeStreamEvent::ToolStart { tool_name, tool_id, .. } if tool_name == "search_notes" && tool_id == "tool_xyz")
         );
     }
 
@@ -523,7 +654,7 @@ mod tests {
         }));
         assert_eq!(events.len(), 1);
         assert!(
-            matches!(&events[0], ClaudeStreamEvent::ToolStart { tool_name, tool_id } if tool_name == "search_notes" && tool_id == "tu_1")
+            matches!(&events[0], ClaudeStreamEvent::ToolStart { tool_name, tool_id, .. } if tool_name == "search_notes" && tool_id == "tu_1")
         );
     }
 
@@ -541,7 +672,8 @@ mod tests {
     }
 
     #[test]
-    fn dispatch_stream_event_non_text_delta_is_ignored() {
+    fn dispatch_stream_event_input_json_delta_accumulates_silently() {
+        // input_json_delta doesn't emit events directly — it accumulates in state
         let (_, events) = run_dispatch(serde_json::json!({
             "type": "stream_event",
             "event": { "type": "content_block_delta", "index": 0, "delta": { "type": "input_json_delta", "partial_json": "{}" } }
@@ -566,6 +698,112 @@ mod tests {
         assert!(events.is_empty());
     }
 
+    #[test]
+    fn dispatch_event_handles_tool_result_string_content() {
+        let (_, events) = run_dispatch(serde_json::json!({
+            "type": "tool_result",
+            "tool_use_id": "tool_abc",
+            "content": "Found 3 notes matching query"
+        }));
+        assert_eq!(events.len(), 1);
+        assert!(
+            matches!(&events[0], ClaudeStreamEvent::ToolDone { tool_id, output }
+                if tool_id == "tool_abc" && output.as_deref() == Some("Found 3 notes matching query"))
+        );
+    }
+
+    #[test]
+    fn dispatch_event_handles_tool_result_array_content() {
+        let (_, events) = run_dispatch(serde_json::json!({
+            "type": "tool_result",
+            "tool_use_id": "tool_def",
+            "content": [{ "type": "text", "text": "Line 1" }, { "type": "text", "text": "Line 2" }]
+        }));
+        assert!(
+            matches!(&events[0], ClaudeStreamEvent::ToolDone { output, .. }
+                if output.as_deref() == Some("Line 1\nLine 2"))
+        );
+    }
+
+    #[test]
+    fn dispatch_event_tool_result_missing_tool_id_is_ignored() {
+        let (_, events) = run_dispatch(serde_json::json!({
+            "type": "tool_result", "content": "result text"
+        }));
+        assert!(events.is_empty());
+    }
+
+    #[test]
+    fn dispatch_accumulates_input_json_deltas() {
+        let (_, events) = run_dispatch_sequence(vec![
+            // Start tool_use block
+            serde_json::json!({
+                "type": "stream_event",
+                "event": { "type": "content_block_start", "content_block": { "type": "tool_use", "id": "t1", "name": "search_notes", "input": {} } }
+            }),
+            // Input delta chunks
+            serde_json::json!({
+                "type": "stream_event",
+                "event": { "type": "content_block_delta", "delta": { "type": "input_json_delta", "partial_json": "{\"query\":" } }
+            }),
+            serde_json::json!({
+                "type": "stream_event",
+                "event": { "type": "content_block_delta", "delta": { "type": "input_json_delta", "partial_json": "\"test\"}" } }
+            }),
+            // Stop block
+            serde_json::json!({
+                "type": "stream_event",
+                "event": { "type": "content_block_stop" }
+            }),
+            // Assistant message triggers ToolStart with accumulated input
+            serde_json::json!({
+                "type": "assistant",
+                "message": { "content": [
+                    { "type": "tool_use", "id": "t1", "name": "search_notes", "input": { "query": "test" } }
+                ] }
+            }),
+        ]);
+        // First event: ToolStart with no input (from content_block_start)
+        assert!(matches!(
+            &events[0],
+            ClaudeStreamEvent::ToolStart { input: None, .. }
+        ));
+        // Second event: ToolStart with accumulated input (from assistant)
+        assert!(
+            matches!(&events[1], ClaudeStreamEvent::ToolStart { input: Some(inp), .. }
+                if inp == "{\"query\":\"test\"}")
+        );
+    }
+
+    #[test]
+    fn dispatch_assistant_uses_block_input_when_no_deltas() {
+        let (_, events) = run_dispatch(serde_json::json!({
+            "type": "assistant",
+            "message": { "content": [
+                { "type": "tool_use", "id": "tu_x", "name": "create_note", "input": { "title": "Hello", "content": "world" } }
+            ] }
+        }));
+        assert!(
+            matches!(&events[0], ClaudeStreamEvent::ToolStart { input: Some(inp), .. }
+                if inp.contains("title") && inp.contains("Hello"))
+        );
+    }
+
+    #[test]
+    fn content_block_stop_clears_current_tool() {
+        let (state, _) = run_dispatch_sequence(vec![
+            serde_json::json!({
+                "type": "stream_event",
+                "event": { "type": "content_block_start", "content_block": { "type": "tool_use", "id": "t1", "name": "x", "input": {} } }
+            }),
+            serde_json::json!({
+                "type": "stream_event",
+                "event": { "type": "content_block_stop" }
+            }),
+        ]);
+        assert!(state.current_tool_id.is_none());
+    }
+
     // --- run_claude_subprocess with mock scripts ---
 
     #[cfg(unix)]
@@ -584,7 +822,7 @@ mod tests {
         std::fs::write(&path, script).unwrap();
         std::fs::set_permissions(&path, std::fs::Permissions::from_mode(0o755)).unwrap();
         let mut events = vec![];
-        let result = run_claude_subprocess(&path, args, &mut |e| events.push(e));
+        let result = run_claude_subprocess(&path, args, None, &mut |e| events.push(e));
         (result, events)
     }
 
@@ -735,6 +973,8 @@ mod tests {
             assert!(args.contains(&"--dangerously-skip-permissions".to_string()));
             assert!(args.contains(&"--no-session-persistence".to_string()));
             assert!(!args.contains(&"--append-system-prompt".to_string()));
+            // Native tools must NOT be disabled
+            assert!(!args.contains(&"--tools".to_string()));
         }
     }
 
@@ -806,7 +1046,7 @@ mod tests {
     fn run_subprocess_spawn_failure() {
         let fake_bin = PathBuf::from("/nonexistent/binary/path");
         let mut events = vec![];
-        let result = run_claude_subprocess(&fake_bin, &[], &mut |e| events.push(e));
+        let result = run_claude_subprocess(&fake_bin, &[], None, &mut |e| events.push(e));
         assert!(result.is_err());
         assert!(result.unwrap_err().contains("Failed to spawn"));
     }

src-tauri/src/commands.rs

@@ -0,0 +1,673 @@
+use std::borrow::Cow;
+
+use crate::ai_chat::{AiChatRequest, AiChatResponse};
+use crate::claude_cli::{
+    AgentStreamRequest, ChatStreamRequest, ClaudeCliStatus, ClaudeStreamEvent,
+};
+use crate::frontmatter::FrontmatterValue;
+use crate::git::{
+    GitCommit, GitPullResult, GitPushResult, LastCommitInfo, ModifiedFile, PulseCommit,
+};
+use crate::github::{DeviceFlowPollResult, DeviceFlowStart, GitHubUser, GithubRepo};
+use crate::indexing::{IndexStatus, IndexingProgress};
+use crate::search::SearchResponse;
+use crate::settings::Settings;
+use crate::theme::{ThemeFile, VaultSettings};
+use crate::vault::{RenameResult, VaultEntry};
+use crate::vault_config::VaultConfig;
+use crate::vault_list::VaultList;
+use crate::{
+    frontmatter, git, github, indexing, menu, search, theme, vault, vault_config, vault_list,
+};
+
+/// Expand a leading `~` or `~/` in a path string to the user's home directory.
+/// Returns the original string unchanged if it doesn't start with `~` or if the
+/// home directory cannot be determined.
+pub fn expand_tilde(path: &str) -> Cow<'_, str> {
+    if path == "~" {
+        if let Some(home) = dirs::home_dir() {
+            return Cow::Owned(home.to_string_lossy().into_owned());
+        }
+    } else if let Some(rest) = path.strip_prefix("~/") {
+        if let Some(home) = dirs::home_dir() {
+            return Cow::Owned(format!("{}/{}", home.to_string_lossy(), rest));
+        }
+    }
+    Cow::Borrowed(path)
+}
+
+pub fn parse_build_label(version: &str) -> String {
+    let parts: Vec<&str> = version.split('.').collect();
+    match parts.as_slice() {
+        [_, minor, patch] if minor.len() >= 6 => format!("b{}", patch),
+        [_, _, _] => "dev".to_string(),
+        _ => "b?".to_string(),
+    }
+}
+
+pub fn emit_unavailable(app_handle: &tauri::AppHandle) {
+    use tauri::Emitter;
+    let _ = app_handle.emit(
+        "indexing-progress",
+        IndexingProgress {
+            phase: "unavailable".to_string(),
+            current: 0,
+            total: 0,
+            done: true,
+            error: Some("qmd not available".to_string()),
+        },
+    );
+}
+
+// ── Vault commands ──────────────────────────────────────────────────────────
+
+#[tauri::command]
+pub fn list_vault(path: String) -> Result<Vec<VaultEntry>, String> {
+    let path = expand_tilde(&path);
+    vault::scan_vault_cached(std::path::Path::new(path.as_ref()))
+}
+
+#[tauri::command]
+pub fn get_note_content(path: String) -> Result<String, String> {
+    let path = expand_tilde(&path);
+    vault::get_note_content(std::path::Path::new(path.as_ref()))
+}
+
+#[tauri::command]
+pub fn save_note_content(path: String, content: String) -> Result<(), String> {
+    let path = expand_tilde(&path);
+    vault::save_note_content(&path, &content)
+}
+
+#[tauri::command]
+pub fn rename_note(
+    vault_path: String,
+    old_path: String,
+    new_title: String,
+) -> Result<RenameResult, String> {
+    let vault_path = expand_tilde(&vault_path);
+    let old_path = expand_tilde(&old_path);
+    vault::rename_note(&vault_path, &old_path, &new_title)
+}
+
+#[tauri::command]
+pub fn purge_trash(vault_path: String) -> Result<Vec<String>, String> {
+    let vault_path = expand_tilde(&vault_path);
+    vault::purge_trash(&vault_path)
+}
+
+#[tauri::command]
+pub fn delete_note(path: String) -> Result<String, String> {
+    let path = expand_tilde(&path);
+    vault::delete_note(&path)
+}
+
+#[tauri::command]
+pub fn migrate_is_a_to_type(vault_path: String) -> Result<usize, String> {
+    let vault_path = expand_tilde(&vault_path);
+    vault::migrate_is_a_to_type(&vault_path)
+}
+
+#[tauri::command]
+pub fn create_getting_started_vault(target_path: Option<String>) -> Result<String, String> {
+    let path = match target_path {
+        Some(p) if !p.is_empty() => expand_tilde(&p).into_owned(),
+        _ => vault::default_vault_path()?.to_string_lossy().to_string(),
+    };
+    vault::create_getting_started_vault(&path)
+}
+
+#[tauri::command]
+pub fn check_vault_exists(path: String) -> bool {
+    let path = expand_tilde(&path);
+    vault::vault_exists(&path)
+}
+
+#[tauri::command]
+pub fn get_default_vault_path() -> Result<String, String> {
+    vault::default_vault_path().map(|p| p.to_string_lossy().to_string())
+}
+
+#[tauri::command]
+pub fn save_image(vault_path: String, filename: String, data: String) -> Result<String, String> {
+    let vault_path = expand_tilde(&vault_path);
+    vault::save_image(&vault_path, &filename, &data)
+}
+
+#[tauri::command]
+pub fn copy_image_to_vault(vault_path: String, source_path: String) -> Result<String, String> {
+    let vault_path = expand_tilde(&vault_path);
+    vault::copy_image_to_vault(&vault_path, &source_path)
+}
+
+// ── Frontmatter commands ────────────────────────────────────────────────────
+
+#[tauri::command]
+pub fn update_frontmatter(
+    path: String,
+    key: String,
+    value: FrontmatterValue,
+) -> Result<String, String> {
+    let path = expand_tilde(&path);
+    frontmatter::update_frontmatter(&path, &key, value)
+}
+
+#[tauri::command]
+pub fn delete_frontmatter_property(path: String, key: String) -> Result<String, String> {
+    let path = expand_tilde(&path);
+    frontmatter::delete_frontmatter_property(&path, &key)
+}
+
+#[tauri::command]
+pub fn batch_archive_notes(paths: Vec<String>) -> Result<usize, String> {
+    let mut count = 0;
+    for path in &paths {
+        let path = expand_tilde(path);
+        frontmatter::update_frontmatter(&path, "Archived", FrontmatterValue::Bool(true))?;
+        count += 1;
+    }
+    Ok(count)
+}
+
+#[tauri::command]
+pub fn batch_trash_notes(paths: Vec<String>) -> Result<usize, String> {
+    let now = chrono::Utc::now().format("%Y-%m-%dT%H:%M:%SZ").to_string();
+    let mut count = 0;
+    for path in &paths {
+        let path = expand_tilde(path);
+        frontmatter::update_frontmatter(&path, "Trashed", FrontmatterValue::Bool(true))?;
+        frontmatter::update_frontmatter(
+            &path,
+            "Trashed at",
+            FrontmatterValue::String(now.clone()),
+        )?;
+        count += 1;
+    }
+    Ok(count)
+}
+
+// ── Git commands ────────────────────────────────────────────────────────────
+
+#[tauri::command]
+pub fn get_file_history(vault_path: String, path: String) -> Result<Vec<GitCommit>, String> {
+    let vault_path = expand_tilde(&vault_path);
+    let path = expand_tilde(&path);
+    git::get_file_history(&vault_path, &path)
+}
+
+#[tauri::command]
+pub fn get_modified_files(vault_path: String) -> Result<Vec<ModifiedFile>, String> {
+    let vault_path = expand_tilde(&vault_path);
+    git::get_modified_files(&vault_path)
+}
+
+#[tauri::command]
+pub fn get_file_diff(vault_path: String, path: String) -> Result<String, String> {
+    let vault_path = expand_tilde(&vault_path);
+    let path = expand_tilde(&path);
+    git::get_file_diff(&vault_path, &path)
+}
+
+#[tauri::command]
+pub fn get_file_diff_at_commit(
+    vault_path: String,
+    path: String,
+    commit_hash: String,
+) -> Result<String, String> {
+    let vault_path = expand_tilde(&vault_path);
+    let path = expand_tilde(&path);
+    git::get_file_diff_at_commit(&vault_path, &path, &commit_hash)
+}
+
+#[tauri::command]
+pub fn get_vault_pulse(
+    vault_path: String,
+    limit: Option<usize>,
+    skip: Option<usize>,
+) -> Result<Vec<PulseCommit>, String> {
+    let vault_path = expand_tilde(&vault_path);
+    let limit = limit.unwrap_or(20);
+    let skip = skip.unwrap_or(0);
+    git::get_vault_pulse(&vault_path, limit, skip)
+}
+
+#[tauri::command]
+pub fn git_commit(vault_path: String, message: String) -> Result<String, String> {
+    let vault_path = expand_tilde(&vault_path);
+    git::git_commit(&vault_path, &message)
+}
+
+#[tauri::command]
+pub fn get_last_commit_info(vault_path: String) -> Result<Option<LastCommitInfo>, String> {
+    let vault_path = expand_tilde(&vault_path);
+    git::get_last_commit_info(&vault_path)
+}
+
+#[tauri::command]
+pub fn git_pull(vault_path: String) -> Result<GitPullResult, String> {
+    let vault_path = expand_tilde(&vault_path);
+    git::git_pull(&vault_path)
+}
+
+#[tauri::command]
+pub fn get_conflict_files(vault_path: String) -> Result<Vec<String>, String> {
+    let vault_path = expand_tilde(&vault_path);
+    git::get_conflict_files(&vault_path)
+}
+
+#[tauri::command]
+pub fn get_conflict_mode(vault_path: String) -> String {
+    let vault_path = expand_tilde(&vault_path);
+    git::get_conflict_mode(&vault_path)
+}
+
+#[tauri::command]
+pub fn git_resolve_conflict(
+    vault_path: String,
+    file: String,
+    strategy: String,
+) -> Result<(), String> {
+    let vault_path = expand_tilde(&vault_path);
+    git::git_resolve_conflict(&vault_path, &file, &strategy)
+}
+
+#[tauri::command]
+pub fn git_commit_conflict_resolution(vault_path: String) -> Result<String, String> {
+    let vault_path = expand_tilde(&vault_path);
+    git::git_commit_conflict_resolution(&vault_path)
+}
+
+#[tauri::command]
+pub fn git_push(vault_path: String) -> Result<GitPushResult, String> {
+    let vault_path = expand_tilde(&vault_path);
+    git::git_push(&vault_path)
+}
+
+// ── GitHub commands ─────────────────────────────────────────────────────────
+
+#[tauri::command]
+pub async fn github_list_repos(token: String) -> Result<Vec<GithubRepo>, String> {
+    github::github_list_repos(&token).await
+}
+
+#[tauri::command]
+pub async fn github_create_repo(
+    token: String,
+    name: String,
+    private: bool,
+) -> Result<GithubRepo, String> {
+    github::github_create_repo(&token, &name, private).await
+}
+
+#[tauri::command]
+pub fn clone_repo(url: String, token: String, local_path: String) -> Result<String, String> {
+    let local_path = expand_tilde(&local_path);
+    github::clone_repo(&url, &token, &local_path)
+}
+
+#[tauri::command]
+pub async fn github_device_flow_start() -> Result<DeviceFlowStart, String> {
+    github::github_device_flow_start().await
+}
+
+#[tauri::command]
+pub async fn github_device_flow_poll(device_code: String) -> Result<DeviceFlowPollResult, String> {
+    github::github_device_flow_poll(&device_code).await
+}
+
+#[tauri::command]
+pub async fn github_get_user(token: String) -> Result<GitHubUser, String> {
+    github::github_get_user(&token).await
+}
+
+// ── AI / Claude commands ────────────────────────────────────────────────────
+
+#[tauri::command]
+pub async fn ai_chat(request: AiChatRequest) -> Result<AiChatResponse, String> {
+    crate::ai_chat::send_chat(request).await
+}
+
+#[tauri::command]
+pub fn check_claude_cli() -> ClaudeCliStatus {
+    crate::claude_cli::check_cli()
+}
+
+#[tauri::command]
+pub async fn stream_claude_chat(
+    app_handle: tauri::AppHandle,
+    request: ChatStreamRequest,
+) -> Result<String, String> {
+    use tauri::Emitter;
+    tokio::task::spawn_blocking(move || {
+        crate::claude_cli::run_chat_stream(request, |event: ClaudeStreamEvent| {
+            let _ = app_handle.emit("claude-stream", &event);
+        })
+    })
+    .await
+    .map_err(|e| format!("Task failed: {e}"))?
+}
+
+#[tauri::command]
+pub async fn stream_claude_agent(
+    app_handle: tauri::AppHandle,
+    request: AgentStreamRequest,
+) -> Result<String, String> {
+    use tauri::Emitter;
+    tokio::task::spawn_blocking(move || {
+        crate::claude_cli::run_agent_stream(request, |event: ClaudeStreamEvent| {
+            let _ = app_handle.emit("claude-agent-stream", &event);
+        })
+    })
+    .await
+    .map_err(|e| format!("Task failed: {e}"))?
+}
+
+// ── Search & indexing commands ──────────────────────────────────────────────
+
+#[tauri::command]
+pub async fn search_vault(
+    vault_path: String,
+    query: String,
+    mode: String,
+    limit: Option<usize>,
+) -> Result<SearchResponse, String> {
+    let vault_path = expand_tilde(&vault_path).into_owned();
+    let limit = limit.unwrap_or(20);
+    tokio::task::spawn_blocking(move || search::search_vault(&vault_path, &query, &mode, limit))
+        .await
+        .map_err(|e| format!("Search task failed: {}", e))?
+}
+
+#[tauri::command]
+pub fn get_index_status(vault_path: String) -> IndexStatus {
+    let vault_path = expand_tilde(&vault_path);
+    indexing::check_index_status(&vault_path)
+}
+
+#[tauri::command]
+pub async fn start_indexing(
+    app_handle: tauri::AppHandle,
+    vault_path: String,
+) -> Result<(), String> {
+    use tauri::Emitter;
+    let vault_path = expand_tilde(&vault_path).into_owned();
+    tokio::task::spawn_blocking(move || {
+        if indexing::find_qmd_binary().is_none() {
+            log::info!("qmd binary not found — attempting auto-install via bun");
+            let _ = app_handle.emit(
+                "indexing-progress",
+                IndexingProgress {
+                    phase: "installing".to_string(),
+                    current: 0,
+                    total: 0,
+                    done: false,
+                    error: None,
+                },
+            );
+
+            match indexing::try_auto_install_qmd() {
+                Ok(()) if indexing::find_qmd_binary().is_some() => {
+                    log::info!("qmd auto-installed successfully, proceeding with indexing");
+                }
+                Ok(()) => {
+                    log::warn!("qmd auto-install reported success but binary still not found");
+                    emit_unavailable(&app_handle);
+                    return Err("qmd not available after install".to_string());
+                }
+                Err(e) => {
+                    log::info!("qmd auto-install failed: {e}");
+                    emit_unavailable(&app_handle);
+                    return Err(format!("qmd not available: {e}"));
+                }
+            }
+        }
+
+        indexing::run_full_index(&vault_path, |progress| {
+            let _ = app_handle.emit("indexing-progress", &progress);
+        })
+    })
+    .await
+    .map_err(|e| format!("Indexing task failed: {e}"))?
+}
+
+#[tauri::command]
+pub async fn trigger_incremental_index(vault_path: String) -> Result<(), String> {
+    let vault_path = expand_tilde(&vault_path).into_owned();
+    tokio::task::spawn_blocking(move || indexing::run_incremental_update(&vault_path))
+        .await
+        .map_err(|e| format!("Incremental index failed: {e}"))?
+}
+
+// ── MCP commands ────────────────────────────────────────────────────────────
+
+#[tauri::command]
+pub async fn register_mcp_tools(vault_path: String) -> Result<String, String> {
+    let vault_path = expand_tilde(&vault_path).into_owned();
+    tokio::task::spawn_blocking(move || crate::mcp::register_mcp(&vault_path))
+        .await
+        .map_err(|e| format!("Registration task failed: {e}"))?
+}
+
+#[tauri::command]
+pub async fn check_mcp_status() -> Result<crate::mcp::McpStatus, String> {
+    tokio::task::spawn_blocking(crate::mcp::check_mcp_status)
+        .await
+        .map_err(|e| format!("MCP status check failed: {e}"))
+}
+
+// ── Theme commands ──────────────────────────────────────────────────────────
+
+#[tauri::command]
+pub fn list_themes(vault_path: String) -> Result<Vec<ThemeFile>, String> {
+    let vault_path = expand_tilde(&vault_path);
+    theme::list_themes(&vault_path)
+}
+
+#[tauri::command]
+pub fn get_theme(vault_path: String, theme_id: String) -> Result<ThemeFile, String> {
+    let vault_path = expand_tilde(&vault_path);
+    theme::get_theme(&vault_path, &theme_id)
+}
+
+#[tauri::command]
+pub fn get_vault_settings(vault_path: String) -> Result<VaultSettings, String> {
+    let vault_path = expand_tilde(&vault_path);
+    theme::get_vault_settings(&vault_path)
+}
+
+#[tauri::command]
+pub fn save_vault_settings(vault_path: String, settings: VaultSettings) -> Result<(), String> {
+    let vault_path = expand_tilde(&vault_path);
+    theme::save_vault_settings(&vault_path, settings)
+}
+
+#[tauri::command]
+pub fn set_active_theme(vault_path: String, theme_id: Option<String>) -> Result<(), String> {
+    let vault_path = expand_tilde(&vault_path);
+    theme::set_active_theme(&vault_path, theme_id.as_deref())
+}
+
+#[tauri::command]
+pub fn create_theme(vault_path: String, source_id: Option<String>) -> Result<String, String> {
+    let vault_path = expand_tilde(&vault_path);
+    theme::create_theme(&vault_path, source_id.as_deref())
+}
+
+#[tauri::command]
+pub fn create_vault_theme(vault_path: String, name: Option<String>) -> Result<String, String> {
+    let vault_path = expand_tilde(&vault_path);
+    theme::create_vault_theme(&vault_path, name.as_deref())
+}
+
+#[tauri::command]
+pub fn ensure_vault_themes(vault_path: String) -> Result<(), String> {
+    let vault_path = expand_tilde(&vault_path);
+    theme::ensure_vault_themes(&vault_path)
+}
+
+#[tauri::command]
+pub fn restore_default_themes(vault_path: String) -> Result<String, String> {
+    let vault_path = expand_tilde(&vault_path);
+    theme::restore_default_themes(&vault_path)
+}
+
+#[tauri::command]
+pub fn repair_vault(vault_path: String) -> Result<String, String> {
+    let vault_path = expand_tilde(&vault_path);
+    // Repair themes
+    theme::restore_default_themes(&vault_path)?;
+    // Repair config files (config/agents.md, type/config.md, AGENTS.md stub)
+    vault::repair_config_files(&vault_path)?;
+    Ok("Vault repaired".to_string())
+}
+
+// ── Settings & config commands ──────────────────────────────────────────────
+
+#[tauri::command]
+pub fn get_build_number(app_handle: tauri::AppHandle) -> String {
+    let version = app_handle.package_info().version.to_string();
+    parse_build_label(&version)
+}
+
+#[tauri::command]
+pub fn update_menu_state(
+    app_handle: tauri::AppHandle,
+    has_active_note: bool,
+    has_modified_files: Option<bool>,
+    has_conflicts: Option<bool>,
+) -> Result<(), String> {
+    menu::set_note_items_enabled(&app_handle, has_active_note);
+    if let Some(v) = has_modified_files {
+        menu::set_git_commit_items_enabled(&app_handle, v);
+    }
+    if let Some(v) = has_conflicts {
+        menu::set_git_conflict_items_enabled(&app_handle, v);
+    }
+    Ok(())
+}
+
+#[tauri::command]
+pub fn get_settings() -> Result<Settings, String> {
+    crate::settings::get_settings()
+}
+
+#[tauri::command]
+pub fn save_settings(settings: Settings) -> Result<(), String> {
+    crate::settings::save_settings(settings)
+}
+
+#[tauri::command]
+pub fn load_vault_list() -> Result<VaultList, String> {
+    vault_list::load_vault_list()
+}
+
+#[tauri::command]
+pub fn save_vault_list(list: VaultList) -> Result<(), String> {
+    vault_list::save_vault_list(&list)
+}
+
+#[tauri::command]
+pub fn get_vault_config(vault_path: String) -> Result<VaultConfig, String> {
+    let vault_path = expand_tilde(&vault_path);
+    vault_config::get_vault_config(&vault_path)
+}
+
+#[tauri::command]
+pub fn save_vault_config(vault_path: String, config: VaultConfig) -> Result<(), String> {
+    let vault_path = expand_tilde(&vault_path);
+    vault_config::save_vault_config(&vault_path, config)
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+
+    #[test]
+    fn expand_tilde_with_subpath() {
+        let home = dirs::home_dir().unwrap();
+        let result = expand_tilde("~/Documents/vault");
+        assert_eq!(result, format!("{}/Documents/vault", home.display()));
+    }
+
+    #[test]
+    fn expand_tilde_alone() {
+        let home = dirs::home_dir().unwrap();
+        let result = expand_tilde("~");
+        assert_eq!(result, home.to_string_lossy());
+    }
+
+    #[test]
+    fn expand_tilde_noop_for_absolute_path() {
+        let result = expand_tilde("/usr/local/bin");
+        assert_eq!(result, "/usr/local/bin");
+    }
+
+    #[test]
+    fn expand_tilde_noop_for_relative_path() {
+        let result = expand_tilde("some/relative/path");
+        assert_eq!(result, "some/relative/path");
+    }
+
+    #[test]
+    fn expand_tilde_noop_for_tilde_in_middle() {
+        let result = expand_tilde("/home/~user/path");
+        assert_eq!(result, "/home/~user/path");
+    }
+
+    #[test]
+    fn parse_build_label_release_version() {
+        assert_eq!(parse_build_label("0.20260303.281"), "b281");
+        assert_eq!(parse_build_label("0.20251215.42"), "b42");
+    }
+
+    #[test]
+    fn parse_build_label_dev_version() {
+        assert_eq!(parse_build_label("0.1.0"), "dev");
+        assert_eq!(parse_build_label("0.0.0"), "dev");
+    }
+
+    #[test]
+    fn parse_build_label_malformed() {
+        assert_eq!(parse_build_label("invalid"), "b?");
+        assert_eq!(parse_build_label(""), "b?");
+    }
+
+    #[test]
+    fn test_batch_archive_notes() {
+        let dir = tempfile::TempDir::new().unwrap();
+        let note = dir.path().join("note.md");
+        std::fs::write(&note, "---\nStatus: Active\n---\n# Note\n").unwrap();
+
+        let result = batch_archive_notes(vec![note.to_str().unwrap().to_string()]);
+        assert_eq!(result.unwrap(), 1);
+
+        let content = std::fs::read_to_string(&note).unwrap();
+        assert!(content.contains("Archived: true"));
+        assert!(content.contains("Status: Active"));
+    }
+
+    #[test]
+    fn test_batch_trash_notes() {
+        let dir = tempfile::TempDir::new().unwrap();
+        let note = dir.path().join("note.md");
+        std::fs::write(&note, "---\nStatus: Active\n---\n# Note\n").unwrap();
+
+        let result = batch_trash_notes(vec![note.to_str().unwrap().to_string()]);
+        assert_eq!(result.unwrap(), 1);
+
+        let content = std::fs::read_to_string(&note).unwrap();
+        assert!(content.contains("Trashed: true"));
+        assert!(content.contains("Trashed at"));
+    }
+
+    #[test]
+    fn test_check_vault_exists_false() {
+        assert!(!check_vault_exists("/nonexistent/path/abc123".to_string()));
+    }
+
+    #[test]
+    fn test_get_default_vault_path_returns_ok() {
+        let result = get_default_vault_path();
+        assert!(result.is_ok());
+    }
+}

src-tauri/src/frontmatter.rs

@@ -1,827 +0,0 @@
-use serde::{Deserialize, Serialize};
-use std::fs;
-use std::path::Path;
-
-/// Value type for frontmatter updates
-#[derive(Debug, Serialize, Deserialize, Clone)]
-#[serde(untagged)]
-pub enum FrontmatterValue {
-    String(String),
-    Number(f64),
-    Bool(bool),
-    List(Vec<String>),
-    Null,
-}
-
-/// Characters that require a YAML string value to be quoted.
-fn has_yaml_special_chars(s: &str) -> bool {
-    s.contains(':') || s.contains('#')
-}
-
-/// Check if a string starts with a YAML collection indicator (array or map).
-fn starts_as_yaml_collection(s: &str) -> bool {
-    s.starts_with('[') || s.starts_with('{')
-}
-
-/// Check whether a YAML string value needs quoting to avoid ambiguity.
-fn needs_yaml_quoting(s: &str) -> bool {
-    has_yaml_special_chars(s)
-        || starts_as_yaml_collection(s)
-        || matches!(s, "true" | "false" | "null")
-        || s.parse::<f64>().is_ok()
-}
-
-/// Quote a string value for YAML, escaping internal double quotes.
-fn quote_yaml_string(s: &str) -> String {
-    format!("\"{}\"", s.replace('\"', "\\\""))
-}
-
-/// Format a single YAML list item as `  - "value"`.
-fn format_list_item(item: &str) -> String {
-    format!("  - {}", quote_yaml_string(item))
-}
-
-/// Format a multi-line string as a YAML block scalar (`|`).
-/// Each line is indented by 2 spaces; empty lines are preserved as blank.
-fn format_block_scalar(s: &str) -> String {
-    let indented = s
-        .lines()
-        .map(|l| {
-            if l.is_empty() {
-                String::new()
-            } else {
-                format!("  {}", l)
-            }
-        })
-        .collect::<Vec<_>>()
-        .join("\n");
-    format!("|\n{}", indented)
-}
-
-/// Format a number for YAML (integers without decimal, floats with).
-fn format_yaml_number(n: f64) -> String {
-    if n.fract() == 0.0 {
-        format!("{}", n as i64)
-    } else {
-        format!("{}", n)
-    }
-}
-
-impl FrontmatterValue {
-    pub fn to_yaml_value(&self) -> String {
-        match self {
-            FrontmatterValue::String(s) => {
-                if s.contains('\n') {
-                    format_block_scalar(s)
-                } else if needs_yaml_quoting(s) {
-                    quote_yaml_string(s)
-                } else {
-                    s.clone()
-                }
-            }
-            FrontmatterValue::Number(n) => format_yaml_number(*n),
-            FrontmatterValue::Bool(b) => if *b { "true" } else { "false" }.to_string(),
-            FrontmatterValue::List(items) if items.is_empty() => "[]".to_string(),
-            FrontmatterValue::List(items) => items
-                .iter()
-                .map(|item| format_list_item(item))
-                .collect::<Vec<_>>()
-                .join("\n"),
-            FrontmatterValue::Null => "null".to_string(),
-        }
-    }
-}
-
-/// Check whether a YAML key needs quoting (contains spaces, special chars, etc.).
-fn needs_key_quoting(key: &str) -> bool {
-    key.chars()
-        .any(|c| !c.is_ascii_alphanumeric() && c != '_' && c != '-')
-}
-
-/// Format a key for YAML output (quote if necessary)
-pub fn format_yaml_key(key: &str) -> String {
-    if needs_key_quoting(key) {
-        format!("\"{}\"", key)
-    } else {
-        key.to_string()
-    }
-}
-
-/// Check if a line defines a specific key (handles quoted and unquoted keys)
-fn line_is_key(line: &str, key: &str) -> bool {
-    let trimmed = line.trim_start();
-
-    if trimmed.starts_with(key) && trimmed[key.len()..].starts_with(':') {
-        return true;
-    }
-
-    let dq = format!("\"{}\":", key);
-    if trimmed.starts_with(&dq) {
-        return true;
-    }
-
-    let sq = format!("'{}\':", key);
-    if trimmed.starts_with(&sq) {
-        return true;
-    }
-
-    false
-}
-
-/// Format a key-value pair as one or more YAML lines.
-fn format_yaml_field(key: &str, value: &FrontmatterValue) -> Vec<String> {
-    let yaml_key = format_yaml_key(key);
-    let yaml_value = value.to_yaml_value();
-    if yaml_value.starts_with("|\n") {
-        // Block scalar: key and indicator on the same line, content follows
-        vec![format!("{}: {}", yaml_key, yaml_value)]
-    } else if yaml_value.contains('\n') {
-        vec![format!("{}:", yaml_key), yaml_value]
-    } else {
-        vec![format!("{}: {}", yaml_key, yaml_value)]
-    }
-}
-
-/// Check if a line continues the previous key's value (indented list item,
-/// block scalar content, or blank line inside a block scalar).
-fn is_value_continuation(line: &str) -> bool {
-    line.is_empty() || line.starts_with("  ") || line.starts_with('\t')
-}
-
-/// Split content into frontmatter body and the rest after the closing `---`.
-/// Returns `(fm_content, rest)` where `fm_content` is between the opening and closing `---`.
-fn split_frontmatter(content: &str) -> Result<(&str, &str), String> {
-    let after_open = &content[4..];
-    // Handle empty frontmatter: closing --- immediately after opening ---\n
-    if let Some(stripped) = after_open.strip_prefix("---") {
-        return Ok(("", stripped));
-    }
-    let fm_end = after_open
-        .find("\n---")
-        .map(|i| i + 4)
-        .ok_or_else(|| "Malformed frontmatter: no closing ---".to_string())?;
-    Ok((&content[4..fm_end], &content[fm_end + 4..]))
-}
-
-/// Wrap content in a new frontmatter block containing a single field.
-fn prepend_new_frontmatter(content: &str, key: &str, value: &FrontmatterValue) -> String {
-    let field_lines = format_yaml_field(key, value);
-    format!("---\n{}\n---\n{}", field_lines.join("\n"), content)
-}
-
-/// Apply a field update to existing frontmatter lines.
-/// Replaces the matching key (and its list continuations) with the new value,
-/// or appends if the key is not found. If `value` is None, removes the key.
-fn apply_field_update(lines: &[&str], key: &str, value: Option<&FrontmatterValue>) -> Vec<String> {
-    let mut new_lines: Vec<String> = Vec::new();
-    let mut found_key = false;
-    let mut i = 0;
-
-    while i < lines.len() {
-        if !line_is_key(lines[i], key) {
-            new_lines.push(lines[i].to_string());
-            i += 1;
-            continue;
-        }
-
-        found_key = true;
-        i += 1;
-        // Skip continuation lines belonging to this key (lists, block scalars)
-        while i < lines.len() && is_value_continuation(lines[i]) {
-            i += 1;
-        }
-        // Insert replacement value (if any)
-        if let Some(v) = value {
-            new_lines.extend(format_yaml_field(key, v));
-        }
-    }
-
-    if let (false, Some(v)) = (found_key, value) {
-        new_lines.extend(format_yaml_field(key, v));
-    }
-
-    new_lines
-}
-
-/// Internal function to update frontmatter content
-pub fn update_frontmatter_content(
-    content: &str,
-    key: &str,
-    value: Option<FrontmatterValue>,
-) -> Result<String, String> {
-    if !content.starts_with("---\n") {
-        return match value {
-            Some(v) => Ok(prepend_new_frontmatter(content, key, &v)),
-            None => Ok(content.to_string()),
-        };
-    }
-
-    let (fm_content, rest) = split_frontmatter(content)?;
-    let lines: Vec<&str> = fm_content.lines().collect();
-    let new_lines = apply_field_update(&lines, key, value.as_ref());
-    let new_fm = new_lines.join("\n");
-    Ok(format!("---\n{}\n---{}", new_fm, rest))
-}
-
-/// Helper to read a file, apply a frontmatter transformation, and write back.
-pub fn with_frontmatter<F>(path: &str, transform: F) -> Result<String, String>
-where
-    F: FnOnce(&str) -> Result<String, String>,
-{
-    let file_path = Path::new(path);
-    if !file_path.exists() {
-        return Err(format!("File does not exist: {}", path));
-    }
-
-    let content =
-        fs::read_to_string(file_path).map_err(|e| format!("Failed to read {}: {}", path, e))?;
-
-    let updated = transform(&content)?;
-
-    fs::write(file_path, &updated).map_err(|e| format!("Failed to write {}: {}", path, e))?;
-
-    Ok(updated)
-}
-
-/// Update a single frontmatter property in a markdown file.
-pub fn update_frontmatter(
-    path: &str,
-    key: &str,
-    value: FrontmatterValue,
-) -> Result<String, String> {
-    with_frontmatter(path, |content| {
-        update_frontmatter_content(content, key, Some(value.clone()))
-    })
-}
-
-/// Delete a frontmatter property from a markdown file.
-pub fn delete_frontmatter_property(path: &str, key: &str) -> Result<String, String> {
-    with_frontmatter(path, |content| {
-        update_frontmatter_content(content, key, None)
-    })
-}
-
-#[cfg(test)]
-mod tests {
-    use super::*;
-
-    #[test]
-    fn test_update_frontmatter_string() {
-        let content = "---\nStatus: Draft\n---\n# Test\n";
-        let updated = update_frontmatter_content(
-            content,
-            "Status",
-            Some(FrontmatterValue::String("Active".to_string())),
-        )
-        .unwrap();
-        assert!(updated.contains("Status: Active"));
-        assert!(!updated.contains("Status: Draft"));
-    }
-
-    #[test]
-    fn test_update_frontmatter_add_new_key() {
-        let content = "---\nStatus: Draft\n---\n# Test\n";
-        let updated = update_frontmatter_content(
-            content,
-            "Owner",
-            Some(FrontmatterValue::String("Luca".to_string())),
-        )
-        .unwrap();
-        assert!(updated.contains("Owner: Luca"));
-        assert!(updated.contains("Status: Draft"));
-    }
-
-    #[test]
-    fn test_update_frontmatter_quoted_key() {
-        let content = "---\n\"Is A\": Note\n---\n# Test\n";
-        let updated = update_frontmatter_content(
-            content,
-            "Is A",
-            Some(FrontmatterValue::String("Project".to_string())),
-        )
-        .unwrap();
-        assert!(updated.contains("\"Is A\": Project"));
-        assert!(!updated.contains("Note"));
-    }
-
-    #[test]
-    fn test_update_frontmatter_list() {
-        let content = "---\nStatus: Draft\n---\n# Test\n";
-        let updated = update_frontmatter_content(
-            content,
-            "aliases",
-            Some(FrontmatterValue::List(vec![
-                "Alias1".to_string(),
-                "Alias2".to_string(),
-            ])),
-        )
-        .unwrap();
-        assert!(updated.contains("aliases:"));
-        assert!(updated.contains("  - \"Alias1\""));
-        assert!(updated.contains("  - \"Alias2\""));
-    }
-
-    #[test]
-    fn test_update_frontmatter_replace_list() {
-        let content = "---\naliases:\n  - Old1\n  - Old2\nStatus: Draft\n---\n# Test\n";
-        let updated = update_frontmatter_content(
-            content,
-            "aliases",
-            Some(FrontmatterValue::List(vec!["New1".to_string()])),
-        )
-        .unwrap();
-        assert!(updated.contains("  - \"New1\""));
-        assert!(!updated.contains("Old1"));
-        assert!(!updated.contains("Old2"));
-        assert!(updated.contains("Status: Draft"));
-    }
-
-    #[test]
-    fn test_delete_frontmatter_property() {
-        let content = "---\nStatus: Draft\nOwner: Luca\n---\n# Test\n";
-        let updated = update_frontmatter_content(content, "Owner", None).unwrap();
-        assert!(!updated.contains("Owner"));
-        assert!(updated.contains("Status: Draft"));
-    }
-
-    #[test]
-    fn test_delete_frontmatter_list_property() {
-        let content = "---\naliases:\n  - Alias1\n  - Alias2\nStatus: Draft\n---\n# Test\n";
-        let updated = update_frontmatter_content(content, "aliases", None).unwrap();
-        assert!(!updated.contains("aliases"));
-        assert!(!updated.contains("Alias1"));
-        assert!(updated.contains("Status: Draft"));
-    }
-
-    #[test]
-    fn test_update_frontmatter_no_existing() {
-        let content = "# Test\n\nSome content here.";
-        let updated = update_frontmatter_content(
-            content,
-            "Status",
-            Some(FrontmatterValue::String("Draft".to_string())),
-        )
-        .unwrap();
-        assert!(updated.starts_with("---\n"));
-        assert!(updated.contains("Status: Draft"));
-        assert!(updated.contains("# Test"));
-    }
-
-    #[test]
-    fn test_update_frontmatter_bool() {
-        let content = "---\nStatus: Draft\n---\n# Test\n";
-        let updated =
-            update_frontmatter_content(content, "Reviewed", Some(FrontmatterValue::Bool(true)))
-                .unwrap();
-        assert!(updated.contains("Reviewed: true"));
-    }
-
-    #[test]
-    fn test_format_yaml_key_simple() {
-        assert_eq!(format_yaml_key("Status"), "Status");
-        assert_eq!(format_yaml_key("is_a"), "is_a");
-    }
-
-    #[test]
-    fn test_format_yaml_key_with_spaces() {
-        assert_eq!(format_yaml_key("Is A"), "\"Is A\"");
-        assert_eq!(format_yaml_key("Created at"), "\"Created at\"");
-    }
-
-    // --- to_yaml_value quoting tests ---
-
-    #[test]
-    fn test_to_yaml_value_string_needs_quoting_colon() {
-        let v = FrontmatterValue::String("key: value".to_string());
-        assert_eq!(v.to_yaml_value(), "\"key: value\"");
-    }
-
-    #[test]
-    fn test_to_yaml_value_string_needs_quoting_hash() {
-        let v = FrontmatterValue::String("has # comment".to_string());
-        assert_eq!(v.to_yaml_value(), "\"has # comment\"");
-    }
-
-    #[test]
-    fn test_to_yaml_value_string_needs_quoting_bracket() {
-        let v = FrontmatterValue::String("[array-like]".to_string());
-        assert_eq!(v.to_yaml_value(), "\"[array-like]\"");
-    }
-
-    #[test]
-    fn test_to_yaml_value_string_needs_quoting_brace() {
-        let v = FrontmatterValue::String("{object-like}".to_string());
-        assert_eq!(v.to_yaml_value(), "\"{object-like}\"");
-    }
-
-    #[test]
-    fn test_to_yaml_value_string_needs_quoting_bool_like() {
-        assert_eq!(
-            FrontmatterValue::String("true".to_string()).to_yaml_value(),
-            "\"true\""
-        );
-        assert_eq!(
-            FrontmatterValue::String("false".to_string()).to_yaml_value(),
-            "\"false\""
-        );
-    }
-
-    #[test]
-    fn test_to_yaml_value_string_needs_quoting_null_like() {
-        assert_eq!(
-            FrontmatterValue::String("null".to_string()).to_yaml_value(),
-            "\"null\""
-        );
-    }
-
-    #[test]
-    fn test_to_yaml_value_string_needs_quoting_number_like() {
-        assert_eq!(
-            FrontmatterValue::String("42".to_string()).to_yaml_value(),
-            "\"42\""
-        );
-        assert_eq!(
-            FrontmatterValue::String("3.14".to_string()).to_yaml_value(),
-            "\"3.14\""
-        );
-    }
-
-    #[test]
-    fn test_to_yaml_value_string_plain() {
-        let v = FrontmatterValue::String("Hello World".to_string());
-        assert_eq!(v.to_yaml_value(), "Hello World");
-    }
-
-    #[test]
-    fn test_to_yaml_value_number_integer() {
-        let v = FrontmatterValue::Number(42.0);
-        assert_eq!(v.to_yaml_value(), "42");
-    }
-
-    #[test]
-    fn test_to_yaml_value_number_float() {
-        let v = FrontmatterValue::Number(3.14);
-        assert_eq!(v.to_yaml_value(), "3.14");
-    }
-
-    #[test]
-    fn test_to_yaml_value_null() {
-        assert_eq!(FrontmatterValue::Null.to_yaml_value(), "null");
-    }
-
-    #[test]
-    fn test_to_yaml_value_empty_list() {
-        let v = FrontmatterValue::List(vec![]);
-        assert_eq!(v.to_yaml_value(), "[]");
-    }
-
-    #[test]
-    fn test_to_yaml_value_list_with_colon() {
-        let v = FrontmatterValue::List(vec!["key: value".to_string()]);
-        assert_eq!(v.to_yaml_value(), "  - \"key: value\"");
-    }
-
-    // --- update_frontmatter_content additional type tests ---
-
-    #[test]
-    fn test_update_frontmatter_number() {
-        let content = "---\nStatus: Draft\n---\n# Test\n";
-        let updated =
-            update_frontmatter_content(content, "Priority", Some(FrontmatterValue::Number(5.0)))
-                .unwrap();
-        assert!(updated.contains("Priority: 5"));
-    }
-
-    #[test]
-    fn test_update_frontmatter_number_float() {
-        let content = "---\nStatus: Draft\n---\n# Test\n";
-        let updated =
-            update_frontmatter_content(content, "Score", Some(FrontmatterValue::Number(9.5)))
-                .unwrap();
-        assert!(updated.contains("Score: 9.5"));
-    }
-
-    #[test]
-    fn test_update_frontmatter_null() {
-        let content = "---\nStatus: Draft\n---\n# Test\n";
-        let updated =
-            update_frontmatter_content(content, "ClearMe", Some(FrontmatterValue::Null)).unwrap();
-        assert!(updated.contains("ClearMe: null"));
-    }
-
-    #[test]
-    fn test_update_frontmatter_empty_list() {
-        let content = "---\nStatus: Draft\n---\n# Test\n";
-        let updated =
-            update_frontmatter_content(content, "tags", Some(FrontmatterValue::List(vec![])))
-                .unwrap();
-        assert!(updated.contains("tags: []"));
-    }
-
-    #[test]
-    fn test_update_frontmatter_malformed_no_closing_fence() {
-        let content = "---\nStatus: Draft\nNo closing fence here";
-        let result = update_frontmatter_content(
-            content,
-            "Status",
-            Some(FrontmatterValue::String("Active".to_string())),
-        );
-        assert!(result.is_err());
-        assert!(result.unwrap_err().contains("Malformed frontmatter"));
-    }
-
-    // --- delete non-existent key (should be no-op) ---
-
-    #[test]
-    fn test_delete_nonexistent_key_noop() {
-        let content = "---\nStatus: Draft\n---\n# Test\n";
-        let updated = update_frontmatter_content(content, "NonExistent", None).unwrap();
-        assert_eq!(updated, content);
-    }
-
-    #[test]
-    fn test_delete_from_no_frontmatter_noop() {
-        let content = "# Test\n\nSome content.";
-        let updated = update_frontmatter_content(content, "NonExistent", None).unwrap();
-        assert_eq!(updated, content);
-    }
-
-    // --- line_is_key tests ---
-
-    #[test]
-    fn test_line_is_key_unquoted() {
-        assert!(line_is_key("Status: Draft", "Status"));
-        assert!(!line_is_key("Status: Draft", "Owner"));
-    }
-
-    #[test]
-    fn test_line_is_key_double_quoted() {
-        assert!(line_is_key("\"Is A\": Note", "Is A"));
-        assert!(!line_is_key("\"Is A\": Note", "Status"));
-    }
-
-    #[test]
-    fn test_line_is_key_single_quoted() {
-        assert!(line_is_key("'Is A': Note", "Is A"));
-    }
-
-    #[test]
-    fn test_line_is_key_leading_whitespace() {
-        assert!(line_is_key("  Status: Draft", "Status"));
-    }
-
-    #[test]
-    fn test_line_is_key_partial_match() {
-        // "StatusBar" should not match key "Status"
-        assert!(!line_is_key("StatusBar: value", "Status"));
-    }
-
-    // --- with_frontmatter error cases ---
-
-    #[test]
-    fn test_with_frontmatter_file_not_found() {
-        let result = with_frontmatter("/nonexistent/path/file.md", |c| Ok(c.to_string()));
-        assert!(result.is_err());
-        assert!(result.unwrap_err().contains("does not exist"));
-    }
-
-    // --- roundtrip tests ---
-
-    #[test]
-    fn test_roundtrip_update_string() {
-        let content = "---\nStatus: Draft\n---\n# Test\n";
-        let updated = update_frontmatter_content(
-            content,
-            "Status",
-            Some(FrontmatterValue::String("Active".to_string())),
-        )
-        .unwrap();
-        // Parse back with gray_matter
-        let matter = gray_matter::Matter::<gray_matter::engine::YAML>::new();
-        let parsed = matter.parse(&updated);
-        let data = parsed.data.unwrap();
-        if let gray_matter::Pod::Hash(map) = data {
-            assert_eq!(map.get("Status").unwrap().as_string().unwrap(), "Active");
-        } else {
-            panic!("Expected hash");
-        }
-    }
-
-    #[test]
-    fn test_roundtrip_update_list() {
-        let content = "---\nStatus: Draft\n---\n# Test\n";
-        let updated = update_frontmatter_content(
-            content,
-            "aliases",
-            Some(FrontmatterValue::List(vec![
-                "A".to_string(),
-                "B".to_string(),
-            ])),
-        )
-        .unwrap();
-        let matter = gray_matter::Matter::<gray_matter::engine::YAML>::new();
-        let parsed = matter.parse(&updated);
-        let data = parsed.data.unwrap();
-        if let gray_matter::Pod::Hash(map) = data {
-            let aliases = map.get("aliases").unwrap();
-            if let gray_matter::Pod::Array(arr) = aliases {
-                assert_eq!(arr.len(), 2);
-                assert_eq!(arr[0].as_string().unwrap(), "A");
-                assert_eq!(arr[1].as_string().unwrap(), "B");
-            } else {
-                panic!("Expected array");
-            }
-        } else {
-            panic!("Expected hash");
-        }
-    }
-
-    #[test]
-    fn test_roundtrip_add_then_delete() {
-        let content = "---\nStatus: Draft\n---\n# Test\n";
-        let with_owner = update_frontmatter_content(
-            content,
-            "Owner",
-            Some(FrontmatterValue::String("Luca".to_string())),
-        )
-        .unwrap();
-        assert!(with_owner.contains("Owner: Luca"));
-        let without_owner = update_frontmatter_content(&with_owner, "Owner", None).unwrap();
-        assert!(!without_owner.contains("Owner"));
-        assert!(without_owner.contains("Status: Draft"));
-    }
-
-    // --- format_yaml_key additional tests ---
-
-    #[test]
-    fn test_format_yaml_key_with_colon() {
-        assert_eq!(format_yaml_key("key:value"), "\"key:value\"");
-    }
-
-    #[test]
-    fn test_format_yaml_key_with_hash() {
-        assert_eq!(format_yaml_key("has#tag"), "\"has#tag\"");
-    }
-
-    #[test]
-    fn test_format_yaml_key_with_period() {
-        assert_eq!(format_yaml_key("key.name"), "\"key.name\"");
-    }
-
-    // --- split_frontmatter / empty frontmatter edge cases ---
-
-    #[test]
-    fn test_split_frontmatter_empty_block() {
-        // ---\n---\n  (no fields between opening and closing ---)
-        let result = split_frontmatter("---\n---\n");
-        assert!(
-            result.is_ok(),
-            "split_frontmatter should handle empty frontmatter block"
-        );
-        let (fm, rest) = result.unwrap();
-        assert_eq!(fm, "");
-        assert_eq!(rest, "\n");
-    }
-
-    #[test]
-    fn test_split_frontmatter_empty_block_no_trailing_newline() {
-        // ---\n---  (no trailing newline)
-        let result = split_frontmatter("---\n---");
-        assert!(
-            result.is_ok(),
-            "split_frontmatter should handle empty frontmatter without trailing newline"
-        );
-    }
-
-    #[test]
-    fn test_split_frontmatter_empty_block_with_body() {
-        // ---\n---\n\n# Title\n
-        let result = split_frontmatter("---\n---\n\n# Title\n");
-        assert!(
-            result.is_ok(),
-            "split_frontmatter should handle empty frontmatter with body"
-        );
-        let (fm, rest) = result.unwrap();
-        assert_eq!(fm, "");
-        assert!(rest.contains("# Title"));
-    }
-
-    #[test]
-    fn test_update_frontmatter_empty_block() {
-        let content = "---\n---\n\n# Test\n";
-        let result = update_frontmatter_content(
-            content,
-            "title",
-            Some(FrontmatterValue::String("New Title".to_string())),
-        );
-        assert!(
-            result.is_ok(),
-            "update_frontmatter_content should handle empty frontmatter block"
-        );
-        let updated = result.unwrap();
-        assert!(updated.contains("title: New Title"));
-    }
-
-    // --- block scalar (multi-line string) tests ---
-
-    #[test]
-    fn test_to_yaml_value_multiline_uses_block_scalar() {
-        let v = FrontmatterValue::String("line 1\nline 2\nline 3".to_string());
-        let yaml = v.to_yaml_value();
-        assert!(yaml.starts_with("|\n"));
-        assert!(yaml.contains("  line 1"));
-        assert!(yaml.contains("  line 2"));
-    }
-
-    #[test]
-    fn test_format_yaml_field_block_scalar() {
-        let v = FrontmatterValue::String("## Objective\n\n## Timeline".to_string());
-        let lines = format_yaml_field("template", &v);
-        assert_eq!(lines.len(), 1);
-        assert!(lines[0].starts_with("template: |\n"));
-        assert!(lines[0].contains("  ## Objective"));
-        assert!(lines[0].contains("  ## Timeline"));
-    }
-
-    #[test]
-    fn test_update_frontmatter_block_scalar_add() {
-        let content = "---\ntype: Type\n---\n# Project\n";
-        let template = "## Objective\n\n## Timeline";
-        let updated = update_frontmatter_content(
-            content,
-            "template",
-            Some(FrontmatterValue::String(template.to_string())),
-        )
-        .unwrap();
-        assert!(updated.contains("template: |"));
-        assert!(updated.contains("  ## Objective"));
-        assert!(updated.contains("  ## Timeline"));
-        assert!(updated.contains("type: Type"));
-    }
-
-    #[test]
-    fn test_update_frontmatter_block_scalar_replace() {
-        let content = "---\ntype: Type\ntemplate: |\n  ## Old\n  \n  ## Stuff\ncolor: green\n---\n# Project\n";
-        let new_template = "## New\n\n## Content";
-        let updated = update_frontmatter_content(
-            content,
-            "template",
-            Some(FrontmatterValue::String(new_template.to_string())),
-        )
-        .unwrap();
-        assert!(updated.contains("  ## New"));
-        assert!(updated.contains("  ## Content"));
-        assert!(!updated.contains("## Old"));
-        assert!(!updated.contains("## Stuff"));
-        assert!(updated.contains("color: green"));
-    }
-
-    #[test]
-    fn test_delete_frontmatter_block_scalar() {
-        let content =
-            "---\ntype: Type\ntemplate: |\n  ## Heading\n  \n  ## Body\ncolor: green\n---\n# Project\n";
-        let updated = update_frontmatter_content(content, "template", None).unwrap();
-        assert!(!updated.contains("template"));
-        assert!(!updated.contains("## Heading"));
-        assert!(updated.contains("color: green"));
-    }
-
-    #[test]
-    fn test_roundtrip_block_scalar() {
-        let content = "---\ntype: Type\n---\n# Project\n";
-        let template = "## Objective\n\nDescribe the goal.\n\n## Timeline\n\nKey dates.";
-        let updated = update_frontmatter_content(
-            content,
-            "template",
-            Some(FrontmatterValue::String(template.to_string())),
-        )
-        .unwrap();
-        // Parse back with gray_matter
-        let matter = gray_matter::Matter::<gray_matter::engine::YAML>::new();
-        let parsed = matter.parse(&updated);
-        let data = parsed.data.unwrap();
-        if let gray_matter::Pod::Hash(map) = data {
-            let roundtripped = map.get("template").unwrap().as_string().unwrap();
-            assert!(roundtripped.contains("## Objective"));
-            assert!(roundtripped.contains("## Timeline"));
-            assert!(roundtripped.contains("Describe the goal."));
-        } else {
-            panic!("Expected hash");
-        }
-    }
-
-    #[test]
-    fn test_update_frontmatter_no_body_after_closing() {
-        // Frontmatter with title, no body after closing ---
-        let content = "---\ntitle: Old\n---\n";
-        let result = update_frontmatter_content(
-            content,
-            "title",
-            Some(FrontmatterValue::String("New".to_string())),
-        );
-        assert!(result.is_ok());
-        let updated = result.unwrap();
-        assert!(updated.contains("title: New"));
-        assert!(!updated.contains("title: Old"));
-    }
-}

src-tauri/src/frontmatter/mod.rs

@@ -0,0 +1,207 @@
+mod ops;
+mod yaml;
+
+use std::fs;
+use std::path::Path;
+
+pub use ops::update_frontmatter_content;
+pub use yaml::{format_yaml_key, FrontmatterValue};
+
+/// Helper to read a file, apply a frontmatter transformation, and write back.
+pub fn with_frontmatter<F>(path: &str, transform: F) -> Result<String, String>
+where
+    F: FnOnce(&str) -> Result<String, String>,
+{
+    let file_path = Path::new(path);
+    if !file_path.exists() {
+        return Err(format!("File does not exist: {}", path));
+    }
+
+    let content =
+        fs::read_to_string(file_path).map_err(|e| format!("Failed to read {}: {}", path, e))?;
+
+    let updated = transform(&content)?;
+
+    fs::write(file_path, &updated).map_err(|e| format!("Failed to write {}: {}", path, e))?;
+
+    Ok(updated)
+}
+
+/// Update a single frontmatter property in a markdown file.
+pub fn update_frontmatter(
+    path: &str,
+    key: &str,
+    value: FrontmatterValue,
+) -> Result<String, String> {
+    with_frontmatter(path, |content| {
+        update_frontmatter_content(content, key, Some(value.clone()))
+    })
+}
+
+/// Delete a frontmatter property from a markdown file.
+pub fn delete_frontmatter_property(path: &str, key: &str) -> Result<String, String> {
+    with_frontmatter(path, |content| {
+        update_frontmatter_content(content, key, None)
+    })
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+
+    #[test]
+    fn test_with_frontmatter_file_not_found() {
+        let result = with_frontmatter("/nonexistent/path/file.md", |c| Ok(c.to_string()));
+        assert!(result.is_err());
+        assert!(result.unwrap_err().contains("does not exist"));
+    }
+
+    #[test]
+    fn test_roundtrip_update_string() {
+        let content = "---\nStatus: Draft\n---\n# Test\n";
+        let updated = update_frontmatter_content(
+            content,
+            "Status",
+            Some(FrontmatterValue::String("Active".to_string())),
+        )
+        .unwrap();
+        let matter = gray_matter::Matter::<gray_matter::engine::YAML>::new();
+        let parsed = matter.parse(&updated);
+        let data = parsed.data.unwrap();
+        if let gray_matter::Pod::Hash(map) = data {
+            assert_eq!(map.get("Status").unwrap().as_string().unwrap(), "Active");
+        } else {
+            panic!("Expected hash");
+        }
+    }
+
+    #[test]
+    fn test_roundtrip_update_list() {
+        let content = "---\nStatus: Draft\n---\n# Test\n";
+        let updated = update_frontmatter_content(
+            content,
+            "aliases",
+            Some(FrontmatterValue::List(vec![
+                "A".to_string(),
+                "B".to_string(),
+            ])),
+        )
+        .unwrap();
+        let matter = gray_matter::Matter::<gray_matter::engine::YAML>::new();
+        let parsed = matter.parse(&updated);
+        let data = parsed.data.unwrap();
+        if let gray_matter::Pod::Hash(map) = data {
+            let aliases = map.get("aliases").unwrap();
+            if let gray_matter::Pod::Array(arr) = aliases {
+                assert_eq!(arr.len(), 2);
+                assert_eq!(arr[0].as_string().unwrap(), "A");
+                assert_eq!(arr[1].as_string().unwrap(), "B");
+            } else {
+                panic!("Expected array");
+            }
+        } else {
+            panic!("Expected hash");
+        }
+    }
+
+    #[test]
+    fn test_roundtrip_add_then_delete() {
+        let content = "---\nStatus: Draft\n---\n# Test\n";
+        let with_owner = update_frontmatter_content(
+            content,
+            "Owner",
+            Some(FrontmatterValue::String("Luca".to_string())),
+        )
+        .unwrap();
+        assert!(with_owner.contains("Owner: Luca"));
+        let without_owner = update_frontmatter_content(&with_owner, "Owner", None).unwrap();
+        assert!(!without_owner.contains("Owner"));
+        assert!(without_owner.contains("Status: Draft"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_empty_block() {
+        let content = "---\n---\n\n# Test\n";
+        let result = update_frontmatter_content(
+            content,
+            "title",
+            Some(FrontmatterValue::String("New Title".to_string())),
+        );
+        assert!(result.is_ok());
+        assert!(result.unwrap().contains("title: New Title"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_block_scalar_add() {
+        let content = "---\ntype: Type\n---\n# Project\n";
+        let template = "## Objective\n\n## Timeline";
+        let updated = update_frontmatter_content(
+            content,
+            "template",
+            Some(FrontmatterValue::String(template.to_string())),
+        )
+        .unwrap();
+        assert!(updated.contains("template: |"));
+        assert!(updated.contains("  ## Objective"));
+        assert!(updated.contains("type: Type"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_block_scalar_replace() {
+        let content = "---\ntype: Type\ntemplate: |\n  ## Old\n  \n  ## Stuff\ncolor: green\n---\n# Project\n";
+        let updated = update_frontmatter_content(
+            content,
+            "template",
+            Some(FrontmatterValue::String("## New\n\n## Content".to_string())),
+        )
+        .unwrap();
+        assert!(updated.contains("  ## New"));
+        assert!(!updated.contains("## Old"));
+        assert!(updated.contains("color: green"));
+    }
+
+    #[test]
+    fn test_delete_frontmatter_block_scalar() {
+        let content =
+            "---\ntype: Type\ntemplate: |\n  ## Heading\n  \n  ## Body\ncolor: green\n---\n# Project\n";
+        let updated = update_frontmatter_content(content, "template", None).unwrap();
+        assert!(!updated.contains("template"));
+        assert!(updated.contains("color: green"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_no_body_after_closing() {
+        let content = "---\ntitle: Old\n---\n";
+        let updated = update_frontmatter_content(
+            content,
+            "title",
+            Some(FrontmatterValue::String("New".to_string())),
+        )
+        .unwrap();
+        assert!(updated.contains("title: New"));
+        assert!(!updated.contains("title: Old"));
+    }
+
+    #[test]
+    fn test_roundtrip_block_scalar() {
+        let content = "---\ntype: Type\n---\n# Project\n";
+        let template = "## Objective\n\nDescribe the goal.\n\n## Timeline\n\nKey dates.";
+        let updated = update_frontmatter_content(
+            content,
+            "template",
+            Some(FrontmatterValue::String(template.to_string())),
+        )
+        .unwrap();
+        let matter = gray_matter::Matter::<gray_matter::engine::YAML>::new();
+        let parsed = matter.parse(&updated);
+        let data = parsed.data.unwrap();
+        if let gray_matter::Pod::Hash(map) = data {
+            let roundtripped = map.get("template").unwrap().as_string().unwrap();
+            assert!(roundtripped.contains("## Objective"));
+            assert!(roundtripped.contains("## Timeline"));
+            assert!(roundtripped.contains("Describe the goal."));
+        } else {
+            panic!("Expected hash");
+        }
+    }
+}

src-tauri/src/frontmatter/ops.rs

@@ -0,0 +1,331 @@
+use super::yaml::{format_yaml_field, FrontmatterValue};
+
+/// Check if a line defines a specific key (handles quoted and unquoted keys)
+fn line_is_key(line: &str, key: &str) -> bool {
+    let trimmed = line.trim_start();
+
+    if trimmed.starts_with(key) && trimmed[key.len()..].starts_with(':') {
+        return true;
+    }
+
+    let dq = format!("\"{}\":", key);
+    if trimmed.starts_with(&dq) {
+        return true;
+    }
+
+    let sq = format!("'{}\':", key);
+    if trimmed.starts_with(&sq) {
+        return true;
+    }
+
+    false
+}
+
+/// Check if a line continues the previous key's value (indented list item,
+/// block scalar content, or blank line inside a block scalar).
+fn is_value_continuation(line: &str) -> bool {
+    line.is_empty() || line.starts_with("  ") || line.starts_with('\t')
+}
+
+/// Split content into frontmatter body and the rest after the closing `---`.
+/// Returns `(fm_content, rest)` where `fm_content` is between the opening and closing `---`.
+fn split_frontmatter(content: &str) -> Result<(&str, &str), String> {
+    let after_open = &content[4..];
+    // Handle empty frontmatter: closing --- immediately after opening ---\n
+    if let Some(stripped) = after_open.strip_prefix("---") {
+        return Ok(("", stripped));
+    }
+    let fm_end = after_open
+        .find("\n---")
+        .map(|i| i + 4)
+        .ok_or_else(|| "Malformed frontmatter: no closing ---".to_string())?;
+    Ok((&content[4..fm_end], &content[fm_end + 4..]))
+}
+
+/// Wrap content in a new frontmatter block containing a single field.
+fn prepend_new_frontmatter(content: &str, key: &str, value: &FrontmatterValue) -> String {
+    let field_lines = format_yaml_field(key, value);
+    format!("---\n{}\n---\n{}", field_lines.join("\n"), content)
+}
+
+/// Apply a field update to existing frontmatter lines.
+/// Replaces the matching key (and its list continuations) with the new value,
+/// or appends if the key is not found. If `value` is None, removes the key.
+fn apply_field_update(lines: &[&str], key: &str, value: Option<&FrontmatterValue>) -> Vec<String> {
+    let mut new_lines: Vec<String> = Vec::new();
+    let mut found_key = false;
+    let mut i = 0;
+
+    while i < lines.len() {
+        if !line_is_key(lines[i], key) {
+            new_lines.push(lines[i].to_string());
+            i += 1;
+            continue;
+        }
+
+        found_key = true;
+        i += 1;
+        // Skip continuation lines belonging to this key (lists, block scalars)
+        while i < lines.len() && is_value_continuation(lines[i]) {
+            i += 1;
+        }
+        // Insert replacement value (if any)
+        if let Some(v) = value {
+            new_lines.extend(format_yaml_field(key, v));
+        }
+    }
+
+    if let (false, Some(v)) = (found_key, value) {
+        new_lines.extend(format_yaml_field(key, v));
+    }
+
+    new_lines
+}
+
+/// Internal function to update frontmatter content
+pub fn update_frontmatter_content(
+    content: &str,
+    key: &str,
+    value: Option<FrontmatterValue>,
+) -> Result<String, String> {
+    if !content.starts_with("---\n") {
+        return match value {
+            Some(v) => Ok(prepend_new_frontmatter(content, key, &v)),
+            None => Ok(content.to_string()),
+        };
+    }
+
+    let (fm_content, rest) = split_frontmatter(content)?;
+    let lines: Vec<&str> = fm_content.lines().collect();
+    let new_lines = apply_field_update(&lines, key, value.as_ref());
+    let new_fm = new_lines.join("\n");
+    Ok(format!("---\n{}\n---{}", new_fm, rest))
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+
+    #[test]
+    fn test_update_frontmatter_string() {
+        let content = "---\nStatus: Draft\n---\n# Test\n";
+        let updated = update_frontmatter_content(
+            content,
+            "Status",
+            Some(FrontmatterValue::String("Active".to_string())),
+        )
+        .unwrap();
+        assert!(updated.contains("Status: Active"));
+        assert!(!updated.contains("Status: Draft"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_add_new_key() {
+        let content = "---\nStatus: Draft\n---\n# Test\n";
+        let updated = update_frontmatter_content(
+            content,
+            "Owner",
+            Some(FrontmatterValue::String("Luca".to_string())),
+        )
+        .unwrap();
+        assert!(updated.contains("Owner: Luca"));
+        assert!(updated.contains("Status: Draft"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_quoted_key() {
+        let content = "---\n\"Is A\": Note\n---\n# Test\n";
+        let updated = update_frontmatter_content(
+            content,
+            "Is A",
+            Some(FrontmatterValue::String("Project".to_string())),
+        )
+        .unwrap();
+        assert!(updated.contains("\"Is A\": Project"));
+        assert!(!updated.contains("Note"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_list() {
+        let content = "---\nStatus: Draft\n---\n# Test\n";
+        let updated = update_frontmatter_content(
+            content,
+            "aliases",
+            Some(FrontmatterValue::List(vec![
+                "Alias1".to_string(),
+                "Alias2".to_string(),
+            ])),
+        )
+        .unwrap();
+        assert!(updated.contains("aliases:"));
+        assert!(updated.contains("  - \"Alias1\""));
+        assert!(updated.contains("  - \"Alias2\""));
+    }
+
+    #[test]
+    fn test_update_frontmatter_replace_list() {
+        let content = "---\naliases:\n  - Old1\n  - Old2\nStatus: Draft\n---\n# Test\n";
+        let updated = update_frontmatter_content(
+            content,
+            "aliases",
+            Some(FrontmatterValue::List(vec!["New1".to_string()])),
+        )
+        .unwrap();
+        assert!(updated.contains("  - \"New1\""));
+        assert!(!updated.contains("Old1"));
+        assert!(!updated.contains("Old2"));
+        assert!(updated.contains("Status: Draft"));
+    }
+
+    #[test]
+    fn test_delete_frontmatter_property() {
+        let content = "---\nStatus: Draft\nOwner: Luca\n---\n# Test\n";
+        let updated = update_frontmatter_content(content, "Owner", None).unwrap();
+        assert!(!updated.contains("Owner"));
+        assert!(updated.contains("Status: Draft"));
+    }
+
+    #[test]
+    fn test_delete_frontmatter_list_property() {
+        let content = "---\naliases:\n  - Alias1\n  - Alias2\nStatus: Draft\n---\n# Test\n";
+        let updated = update_frontmatter_content(content, "aliases", None).unwrap();
+        assert!(!updated.contains("aliases"));
+        assert!(!updated.contains("Alias1"));
+        assert!(updated.contains("Status: Draft"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_no_existing() {
+        let content = "# Test\n\nSome content here.";
+        let updated = update_frontmatter_content(
+            content,
+            "Status",
+            Some(FrontmatterValue::String("Draft".to_string())),
+        )
+        .unwrap();
+        assert!(updated.starts_with("---\n"));
+        assert!(updated.contains("Status: Draft"));
+        assert!(updated.contains("# Test"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_bool() {
+        let content = "---\nStatus: Draft\n---\n# Test\n";
+        let updated =
+            update_frontmatter_content(content, "Reviewed", Some(FrontmatterValue::Bool(true)))
+                .unwrap();
+        assert!(updated.contains("Reviewed: true"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_number() {
+        let content = "---\nStatus: Draft\n---\n# Test\n";
+        let updated =
+            update_frontmatter_content(content, "Priority", Some(FrontmatterValue::Number(5.0)))
+                .unwrap();
+        assert!(updated.contains("Priority: 5"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_number_float() {
+        let content = "---\nStatus: Draft\n---\n# Test\n";
+        let updated =
+            update_frontmatter_content(content, "Score", Some(FrontmatterValue::Number(9.5)))
+                .unwrap();
+        assert!(updated.contains("Score: 9.5"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_null() {
+        let content = "---\nStatus: Draft\n---\n# Test\n";
+        let updated =
+            update_frontmatter_content(content, "ClearMe", Some(FrontmatterValue::Null)).unwrap();
+        assert!(updated.contains("ClearMe: null"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_empty_list() {
+        let content = "---\nStatus: Draft\n---\n# Test\n";
+        let updated =
+            update_frontmatter_content(content, "tags", Some(FrontmatterValue::List(vec![])))
+                .unwrap();
+        assert!(updated.contains("tags: []"));
+    }
+
+    #[test]
+    fn test_update_frontmatter_malformed_no_closing_fence() {
+        let content = "---\nStatus: Draft\nNo closing fence here";
+        let result = update_frontmatter_content(
+            content,
+            "Status",
+            Some(FrontmatterValue::String("Active".to_string())),
+        );
+        assert!(result.is_err());
+        assert!(result.unwrap_err().contains("Malformed frontmatter"));
+    }
+
+    #[test]
+    fn test_delete_nonexistent_key_noop() {
+        let content = "---\nStatus: Draft\n---\n# Test\n";
+        let updated = update_frontmatter_content(content, "NonExistent", None).unwrap();
+        assert_eq!(updated, content);
+    }
+
+    #[test]
+    fn test_delete_from_no_frontmatter_noop() {
+        let content = "# Test\n\nSome content.";
+        let updated = update_frontmatter_content(content, "NonExistent", None).unwrap();
+        assert_eq!(updated, content);
+    }
+
+    #[test]
+    fn test_line_is_key_unquoted() {
+        assert!(line_is_key("Status: Draft", "Status"));
+        assert!(!line_is_key("Status: Draft", "Owner"));
+    }
+
+    #[test]
+    fn test_line_is_key_double_quoted() {
+        assert!(line_is_key("\"Is A\": Note", "Is A"));
+        assert!(!line_is_key("\"Is A\": Note", "Status"));
+    }
+
+    #[test]
+    fn test_line_is_key_single_quoted() {
+        assert!(line_is_key("'Is A': Note", "Is A"));
+    }
+
+    #[test]
+    fn test_line_is_key_leading_whitespace() {
+        assert!(line_is_key("  Status: Draft", "Status"));
+    }
+
+    #[test]
+    fn test_line_is_key_partial_match() {
+        assert!(!line_is_key("StatusBar: value", "Status"));
+    }
+
+    #[test]
+    fn test_split_frontmatter_empty_block() {
+        let result = split_frontmatter("---\n---\n");
+        assert!(result.is_ok());
+        let (fm, rest) = result.unwrap();
+        assert_eq!(fm, "");
+        assert_eq!(rest, "\n");
+    }
+
+    #[test]
+    fn test_split_frontmatter_empty_block_no_trailing_newline() {
+        let result = split_frontmatter("---\n---");
+        assert!(result.is_ok());
+    }
+
+    #[test]
+    fn test_split_frontmatter_empty_block_with_body() {
+        let result = split_frontmatter("---\n---\n\n# Title\n");
+        assert!(result.is_ok());
+        let (fm, rest) = result.unwrap();
+        assert_eq!(fm, "");
+        assert!(rest.contains("# Title"));
+    }
+}

src-tauri/src/frontmatter/yaml.rs

@@ -0,0 +1,262 @@
+use serde::{Deserialize, Serialize};
+
+/// Value type for frontmatter updates
+#[derive(Debug, Serialize, Deserialize, Clone)]
+#[serde(untagged)]
+pub enum FrontmatterValue {
+    String(String),
+    Number(f64),
+    Bool(bool),
+    List(Vec<String>),
+    Null,
+}
+
+/// Characters that require a YAML string value to be quoted.
+fn has_yaml_special_chars(s: &str) -> bool {
+    s.contains(':') || s.contains('#')
+}
+
+/// Check if a string starts with a YAML collection indicator (array or map).
+fn starts_as_yaml_collection(s: &str) -> bool {
+    s.starts_with('[') || s.starts_with('{')
+}
+
+/// Check whether a YAML string value needs quoting to avoid ambiguity.
+fn needs_yaml_quoting(s: &str) -> bool {
+    has_yaml_special_chars(s)
+        || starts_as_yaml_collection(s)
+        || matches!(s, "true" | "false" | "null")
+        || s.parse::<f64>().is_ok()
+}
+
+/// Quote a string value for YAML, escaping internal double quotes.
+fn quote_yaml_string(s: &str) -> String {
+    format!("\"{}\"", s.replace('\"', "\\\""))
+}
+
+/// Format a single YAML list item as `  - "value"`.
+fn format_list_item(item: &str) -> String {
+    format!("  - {}", quote_yaml_string(item))
+}
+
+/// Format a multi-line string as a YAML block scalar (`|`).
+/// Each line is indented by 2 spaces; empty lines are preserved as blank.
+fn format_block_scalar(s: &str) -> String {
+    let indented = s
+        .lines()
+        .map(|l| {
+            if l.is_empty() {
+                String::new()
+            } else {
+                format!("  {}", l)
+            }
+        })
+        .collect::<Vec<_>>()
+        .join("\n");
+    format!("|\n{}", indented)
+}
+
+/// Format a number for YAML (integers without decimal, floats with).
+fn format_yaml_number(n: f64) -> String {
+    if n.fract() == 0.0 {
+        format!("{}", n as i64)
+    } else {
+        format!("{}", n)
+    }
+}
+
+impl FrontmatterValue {
+    pub fn to_yaml_value(&self) -> String {
+        match self {
+            FrontmatterValue::String(s) => {
+                if s.contains('\n') {
+                    format_block_scalar(s)
+                } else if needs_yaml_quoting(s) {
+                    quote_yaml_string(s)
+                } else {
+                    s.clone()
+                }
+            }
+            FrontmatterValue::Number(n) => format_yaml_number(*n),
+            FrontmatterValue::Bool(b) => if *b { "true" } else { "false" }.to_string(),
+            FrontmatterValue::List(items) if items.is_empty() => "[]".to_string(),
+            FrontmatterValue::List(items) => items
+                .iter()
+                .map(|item| format_list_item(item))
+                .collect::<Vec<_>>()
+                .join("\n"),
+            FrontmatterValue::Null => "null".to_string(),
+        }
+    }
+}
+
+/// Check whether a YAML key needs quoting (contains spaces, special chars, etc.).
+fn needs_key_quoting(key: &str) -> bool {
+    key.chars()
+        .any(|c| !c.is_ascii_alphanumeric() && c != '_' && c != '-')
+}
+
+/// Format a key for YAML output (quote if necessary)
+pub fn format_yaml_key(key: &str) -> String {
+    if needs_key_quoting(key) {
+        format!("\"{}\"", key)
+    } else {
+        key.to_string()
+    }
+}
+
+/// Format a key-value pair as one or more YAML lines.
+pub fn format_yaml_field(key: &str, value: &FrontmatterValue) -> Vec<String> {
+    let yaml_key = format_yaml_key(key);
+    let yaml_value = value.to_yaml_value();
+    if yaml_value.starts_with("|\n") {
+        // Block scalar: key and indicator on the same line, content follows
+        vec![format!("{}: {}", yaml_key, yaml_value)]
+    } else if yaml_value.contains('\n') {
+        vec![format!("{}:", yaml_key), yaml_value]
+    } else {
+        vec![format!("{}: {}", yaml_key, yaml_value)]
+    }
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+
+    #[test]
+    fn test_to_yaml_value_string_needs_quoting_colon() {
+        let v = FrontmatterValue::String("key: value".to_string());
+        assert_eq!(v.to_yaml_value(), "\"key: value\"");
+    }
+
+    #[test]
+    fn test_to_yaml_value_string_needs_quoting_hash() {
+        let v = FrontmatterValue::String("has # comment".to_string());
+        assert_eq!(v.to_yaml_value(), "\"has # comment\"");
+    }
+
+    #[test]
+    fn test_to_yaml_value_string_needs_quoting_bracket() {
+        let v = FrontmatterValue::String("[array-like]".to_string());
+        assert_eq!(v.to_yaml_value(), "\"[array-like]\"");
+    }
+
+    #[test]
+    fn test_to_yaml_value_string_needs_quoting_brace() {
+        let v = FrontmatterValue::String("{object-like}".to_string());
+        assert_eq!(v.to_yaml_value(), "\"{object-like}\"");
+    }
+
+    #[test]
+    fn test_to_yaml_value_string_needs_quoting_bool_like() {
+        assert_eq!(
+            FrontmatterValue::String("true".to_string()).to_yaml_value(),
+            "\"true\""
+        );
+        assert_eq!(
+            FrontmatterValue::String("false".to_string()).to_yaml_value(),
+            "\"false\""
+        );
+    }
+
+    #[test]
+    fn test_to_yaml_value_string_needs_quoting_null_like() {
+        assert_eq!(
+            FrontmatterValue::String("null".to_string()).to_yaml_value(),
+            "\"null\""
+        );
+    }
+
+    #[test]
+    fn test_to_yaml_value_string_needs_quoting_number_like() {
+        assert_eq!(
+            FrontmatterValue::String("42".to_string()).to_yaml_value(),
+            "\"42\""
+        );
+        assert_eq!(
+            FrontmatterValue::String("3.14".to_string()).to_yaml_value(),
+            "\"3.14\""
+        );
+    }
+
+    #[test]
+    fn test_to_yaml_value_string_plain() {
+        let v = FrontmatterValue::String("Hello World".to_string());
+        assert_eq!(v.to_yaml_value(), "Hello World");
+    }
+
+    #[test]
+    fn test_to_yaml_value_number_integer() {
+        let v = FrontmatterValue::Number(42.0);
+        assert_eq!(v.to_yaml_value(), "42");
+    }
+
+    #[test]
+    fn test_to_yaml_value_number_float() {
+        let v = FrontmatterValue::Number(3.125);
+        assert_eq!(v.to_yaml_value(), "3.125");
+    }
+
+    #[test]
+    fn test_to_yaml_value_null() {
+        assert_eq!(FrontmatterValue::Null.to_yaml_value(), "null");
+    }
+
+    #[test]
+    fn test_to_yaml_value_empty_list() {
+        let v = FrontmatterValue::List(vec![]);
+        assert_eq!(v.to_yaml_value(), "[]");
+    }
+
+    #[test]
+    fn test_to_yaml_value_list_with_colon() {
+        let v = FrontmatterValue::List(vec!["key: value".to_string()]);
+        assert_eq!(v.to_yaml_value(), "  - \"key: value\"");
+    }
+
+    #[test]
+    fn test_to_yaml_value_multiline_uses_block_scalar() {
+        let v = FrontmatterValue::String("line 1\nline 2\nline 3".to_string());
+        let yaml = v.to_yaml_value();
+        assert!(yaml.starts_with("|\n"));
+        assert!(yaml.contains("  line 1"));
+        assert!(yaml.contains("  line 2"));
+    }
+
+    #[test]
+    fn test_format_yaml_key_simple() {
+        assert_eq!(format_yaml_key("Status"), "Status");
+        assert_eq!(format_yaml_key("is_a"), "is_a");
+    }
+
+    #[test]
+    fn test_format_yaml_key_with_spaces() {
+        assert_eq!(format_yaml_key("Is A"), "\"Is A\"");
+        assert_eq!(format_yaml_key("Created at"), "\"Created at\"");
+    }
+
+    #[test]
+    fn test_format_yaml_key_with_colon() {
+        assert_eq!(format_yaml_key("key:value"), "\"key:value\"");
+    }
+
+    #[test]
+    fn test_format_yaml_key_with_hash() {
+        assert_eq!(format_yaml_key("has#tag"), "\"has#tag\"");
+    }
+
+    #[test]
+    fn test_format_yaml_key_with_period() {
+        assert_eq!(format_yaml_key("key.name"), "\"key.name\"");
+    }
+
+    #[test]
+    fn test_format_yaml_field_block_scalar() {
+        let v = FrontmatterValue::String("## Objective\n\n## Timeline".to_string());
+        let lines = format_yaml_field("template", &v);
+        assert_eq!(lines.len(), 1);
+        assert!(lines[0].starts_with("template: |\n"));
+        assert!(lines[0].contains("  ## Objective"));
+        assert!(lines[0].contains("  ## Timeline"));
+    }
+}

src-tauri/src/git/commit.rs

@@ -0,0 +1,87 @@
+use std::path::Path;
+use std::process::Command;
+
+/// Commit all changes with a message.
+pub fn git_commit(vault_path: &str, message: &str) -> Result<String, String> {
+    let vault = Path::new(vault_path);
+
+    // Stage all changes
+    let add = Command::new("git")
+        .args(["add", "-A"])
+        .current_dir(vault)
+        .output()
+        .map_err(|e| format!("Failed to run git add: {}", e))?;
+
+    if !add.status.success() {
+        let stderr = String::from_utf8_lossy(&add.stderr);
+        return Err(format!("git add failed: {}", stderr));
+    }
+
+    // Commit
+    let commit = Command::new("git")
+        .args(["commit", "-m", message])
+        .current_dir(vault)
+        .output()
+        .map_err(|e| format!("Failed to run git commit: {}", e))?;
+
+    if !commit.status.success() {
+        let stderr = String::from_utf8_lossy(&commit.stderr);
+        let stdout = String::from_utf8_lossy(&commit.stdout);
+        // git writes "nothing to commit" to stdout, not stderr
+        let detail = if stderr.trim().is_empty() {
+            stdout
+        } else {
+            stderr
+        };
+        return Err(format!("git commit failed: {}", detail.trim()));
+    }
+
+    Ok(String::from_utf8_lossy(&commit.stdout).to_string())
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use crate::git::tests::setup_git_repo;
+    use std::fs;
+    use std::process::Command;
+
+    #[test]
+    fn test_git_commit() {
+        let dir = setup_git_repo();
+        let vault = dir.path();
+
+        fs::write(vault.join("commit-test.md"), "# Test\n").unwrap();
+
+        let result = git_commit(vault.to_str().unwrap(), "Test commit");
+        assert!(result.is_ok());
+
+        // Verify the commit exists
+        let log = Command::new("git")
+            .args(["log", "--oneline", "-1"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+        let log_str = String::from_utf8_lossy(&log.stdout);
+        assert!(log_str.contains("Test commit"));
+    }
+
+    #[test]
+    fn test_commit_nothing_to_commit_returns_error() {
+        let dir = setup_git_repo();
+        let vault = dir.path();
+        let vp = vault.to_str().unwrap();
+
+        // Create and commit, so working tree is clean
+        fs::write(vault.join("clean.md"), "# Clean\n").unwrap();
+        git_commit(vp, "initial").unwrap();
+
+        // Committing again with no changes should fail
+        let result = git_commit(vp, "nothing here");
+        assert!(result.is_err(), "Commit should fail when nothing to commit");
+        assert!(
+            result.unwrap_err().contains("nothing to commit"),
+            "Error should mention 'nothing to commit'"
+        );
+    }
+}

src-tauri/src/git/conflict.rs

@@ -0,0 +1,366 @@
+use std::path::Path;
+use std::process::Command;
+
+use super::run_git;
+
+/// List files with merge conflicts (unmerged paths).
+///
+/// Uses `git ls-files --unmerged` instead of `git diff --diff-filter=U` because
+/// ls-files reliably detects unmerged index entries even when the merge state is
+/// stale (e.g. after a reboot or when MERGE_HEAD is missing).
+pub fn get_conflict_files(vault_path: &str) -> Result<Vec<String>, String> {
+    let vault = Path::new(vault_path);
+    let output = Command::new("git")
+        .args(["ls-files", "--unmerged"])
+        .current_dir(vault)
+        .output()
+        .map_err(|e| format!("Failed to check conflicts: {}", e))?;
+
+    let stdout = String::from_utf8_lossy(&output.stdout);
+    // Each unmerged file appears multiple times (once per stage: base/ours/theirs).
+    // Format: "<mode> <hash> <stage>\t<path>"
+    let mut files: Vec<String> = stdout
+        .lines()
+        .filter_map(|line| line.split('\t').nth(1).map(|s| s.to_string()))
+        .collect();
+    files.sort();
+    files.dedup();
+    Ok(files)
+}
+
+/// Resolve a single conflict file by choosing "ours" or "theirs" strategy,
+/// then stage the result.
+pub fn git_resolve_conflict(vault_path: &str, file: &str, strategy: &str) -> Result<(), String> {
+    let vault = Path::new(vault_path);
+
+    let checkout_flag = match strategy {
+        "ours" => "--ours",
+        "theirs" => "--theirs",
+        _ => {
+            return Err(format!(
+                "Invalid strategy '{}': must be 'ours' or 'theirs'",
+                strategy
+            ))
+        }
+    };
+
+    run_git(vault, &["checkout", checkout_flag, "--", file])?;
+    run_git(vault, &["add", "--", file])?;
+
+    Ok(())
+}
+
+/// Check whether a rebase is currently in progress.
+pub fn is_rebase_in_progress(vault_path: &str) -> bool {
+    let vault = Path::new(vault_path);
+    let git_dir = vault.join(".git");
+    git_dir.join("rebase-merge").exists() || git_dir.join("rebase-apply").exists()
+}
+
+/// Check whether a merge is currently in progress.
+pub fn is_merge_in_progress(vault_path: &str) -> bool {
+    Path::new(vault_path)
+        .join(".git")
+        .join("MERGE_HEAD")
+        .exists()
+}
+
+/// Returns the current conflict mode: "rebase", "merge", or "none".
+pub fn get_conflict_mode(vault_path: &str) -> String {
+    if is_rebase_in_progress(vault_path) {
+        "rebase".to_string()
+    } else if is_merge_in_progress(vault_path) {
+        "merge".to_string()
+    } else {
+        "none".to_string()
+    }
+}
+
+/// Commit after all conflicts have been resolved.
+/// Detects whether the repo is in a merge or rebase state and uses the
+/// appropriate command (`git commit` vs `git rebase --continue`).
+pub fn git_commit_conflict_resolution(vault_path: &str) -> Result<String, String> {
+    let vault = Path::new(vault_path);
+
+    // Verify no remaining conflicts
+    let remaining = get_conflict_files(vault_path)?;
+    if !remaining.is_empty() {
+        return Err(format!(
+            "Cannot commit: {} file(s) still have unresolved conflicts",
+            remaining.len()
+        ));
+    }
+
+    let mode = get_conflict_mode(vault_path);
+    let output = match mode.as_str() {
+        "rebase" => Command::new("git")
+            .args(["rebase", "--continue"])
+            .env("GIT_EDITOR", "true")
+            .current_dir(vault)
+            .output()
+            .map_err(|e| format!("Failed to run git rebase --continue: {}", e))?,
+        _ => Command::new("git")
+            .args(["commit", "-m", "Resolve merge conflicts"])
+            .current_dir(vault)
+            .output()
+            .map_err(|e| format!("Failed to run git commit: {}", e))?,
+    };
+
+    if !output.status.success() {
+        let stderr = String::from_utf8_lossy(&output.stderr);
+        let stdout = String::from_utf8_lossy(&output.stdout);
+        let detail = if stderr.trim().is_empty() {
+            stdout
+        } else {
+            stderr
+        };
+        let cmd_name = if mode == "rebase" {
+            "git rebase --continue"
+        } else {
+            "git commit"
+        };
+        return Err(format!("{} failed: {}", cmd_name, detail.trim()));
+    }
+
+    Ok(String::from_utf8_lossy(&output.stdout).to_string())
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use crate::git::tests::{setup_git_repo, setup_remote_pair};
+    use crate::git::{git_commit, git_pull, git_push};
+    use std::fs;
+    use std::process::Command;
+    use tempfile::TempDir;
+
+    #[test]
+    fn test_get_conflict_files_empty_when_clean() {
+        let dir = setup_git_repo();
+        let vault = dir.path();
+        let vp = vault.to_str().unwrap();
+
+        fs::write(vault.join("note.md"), "# Note\n").unwrap();
+        git_commit(vp, "initial").unwrap();
+
+        let conflicts = get_conflict_files(vp).unwrap();
+        assert!(conflicts.is_empty());
+    }
+
+    #[test]
+    fn test_resolve_conflict_invalid_strategy() {
+        let (_bare, _clone_a, clone_b) = setup_conflict_pair();
+        let vp_b = clone_b.path().to_str().unwrap();
+
+        let result = git_resolve_conflict(vp_b, "conflict.md", "invalid");
+        assert!(result.is_err());
+        assert!(result.unwrap_err().contains("Invalid strategy"));
+    }
+
+    #[test]
+    fn test_conflict_mode_none_for_clean_repo() {
+        let dir = setup_git_repo();
+        let vault = dir.path();
+        let vp = vault.to_str().unwrap();
+
+        fs::write(vault.join("note.md"), "# Note\n").unwrap();
+        git_commit(vp, "initial").unwrap();
+
+        assert_eq!(get_conflict_mode(vp), "none");
+        assert!(!is_rebase_in_progress(vp));
+        assert!(!is_merge_in_progress(vp));
+    }
+
+    /// Set up a pair of clones that have a merge conflict on the same file.
+    /// Returns (bare, clone_a, clone_b) where clone_b has an unresolved conflict.
+    fn setup_conflict_pair() -> (TempDir, TempDir, TempDir) {
+        let (bare_dir, clone_a_dir, clone_b_dir) = setup_remote_pair();
+
+        let vp_a = clone_a_dir.path().to_str().unwrap();
+        let vp_b = clone_b_dir.path().to_str().unwrap();
+
+        // A creates the file and pushes
+        fs::write(clone_a_dir.path().join("conflict.md"), "# Original\n").unwrap();
+        git_commit(vp_a, "create conflict.md").unwrap();
+        git_push(vp_a).unwrap();
+
+        // B pulls to get the file
+        git_pull(vp_b).unwrap();
+
+        // A modifies and pushes
+        fs::write(clone_a_dir.path().join("conflict.md"), "# Version A\n").unwrap();
+        git_commit(vp_a, "A's change").unwrap();
+        git_push(vp_a).unwrap();
+
+        // B modifies the same file locally and commits
+        fs::write(clone_b_dir.path().join("conflict.md"), "# Version B\n").unwrap();
+        git_commit(vp_b, "B's change").unwrap();
+
+        // B pulls — this causes a merge conflict
+        let result = git_pull(vp_b).unwrap();
+        assert_eq!(result.status, "conflict");
+
+        (bare_dir, clone_a_dir, clone_b_dir)
+    }
+
+    #[test]
+    fn test_resolve_conflict_ours() {
+        let (_bare, _clone_a, clone_b) = setup_conflict_pair();
+        let vp_b = clone_b.path().to_str().unwrap();
+
+        let conflicts = get_conflict_files(vp_b).unwrap();
+        assert!(conflicts.contains(&"conflict.md".to_string()));
+
+        git_resolve_conflict(vp_b, "conflict.md", "ours").unwrap();
+
+        let remaining = get_conflict_files(vp_b).unwrap();
+        assert!(remaining.is_empty());
+
+        let content = fs::read_to_string(clone_b.path().join("conflict.md")).unwrap();
+        assert_eq!(content, "# Version B\n");
+    }
+
+    #[test]
+    fn test_resolve_conflict_theirs() {
+        let (_bare, _clone_a, clone_b) = setup_conflict_pair();
+        let vp_b = clone_b.path().to_str().unwrap();
+
+        git_resolve_conflict(vp_b, "conflict.md", "theirs").unwrap();
+
+        let remaining = get_conflict_files(vp_b).unwrap();
+        assert!(remaining.is_empty());
+
+        let content = fs::read_to_string(clone_b.path().join("conflict.md")).unwrap();
+        assert_eq!(content, "# Version A\n");
+    }
+
+    #[test]
+    fn test_commit_conflict_resolution() {
+        let (_bare, _clone_a, clone_b) = setup_conflict_pair();
+        let vp_b = clone_b.path().to_str().unwrap();
+
+        git_resolve_conflict(vp_b, "conflict.md", "ours").unwrap();
+
+        let result = git_commit_conflict_resolution(vp_b);
+        assert!(result.is_ok());
+
+        let log = Command::new("git")
+            .args(["log", "--oneline", "-1"])
+            .current_dir(clone_b.path())
+            .output()
+            .unwrap();
+        let log_str = String::from_utf8_lossy(&log.stdout);
+        assert!(log_str.contains("Resolve merge conflicts"));
+    }
+
+    #[test]
+    fn test_commit_conflict_resolution_fails_with_unresolved() {
+        let (_bare, _clone_a, clone_b) = setup_conflict_pair();
+        let vp_b = clone_b.path().to_str().unwrap();
+
+        let result = git_commit_conflict_resolution(vp_b);
+        assert!(result.is_err());
+        assert!(result
+            .unwrap_err()
+            .contains("still have unresolved conflicts"));
+    }
+
+    #[test]
+    fn test_conflict_mode_merge_during_merge_conflict() {
+        let (_bare, _clone_a, clone_b) = setup_conflict_pair();
+        let vp_b = clone_b.path().to_str().unwrap();
+
+        assert_eq!(get_conflict_mode(vp_b), "merge");
+        assert!(is_merge_in_progress(vp_b));
+        assert!(!is_rebase_in_progress(vp_b));
+    }
+
+    #[test]
+    fn test_commit_conflict_resolution_merge_mode() {
+        let (_bare, _clone_a, clone_b) = setup_conflict_pair();
+        let vp_b = clone_b.path().to_str().unwrap();
+
+        assert_eq!(get_conflict_mode(vp_b), "merge");
+
+        git_resolve_conflict(vp_b, "conflict.md", "ours").unwrap();
+        let result = git_commit_conflict_resolution(vp_b);
+        assert!(result.is_ok());
+
+        assert_eq!(get_conflict_mode(vp_b), "none");
+    }
+
+    /// Set up a rebase conflict: clone_b has diverged from origin and
+    /// `git pull --rebase` causes a conflict.
+    fn setup_rebase_conflict_pair() -> (TempDir, TempDir, TempDir) {
+        let (bare_dir, clone_a_dir, clone_b_dir) = setup_remote_pair();
+
+        let vp_a = clone_a_dir.path().to_str().unwrap();
+        let vp_b = clone_b_dir.path().to_str().unwrap();
+
+        fs::write(clone_a_dir.path().join("conflict.md"), "# Original\n").unwrap();
+        git_commit(vp_a, "create conflict.md").unwrap();
+        git_push(vp_a).unwrap();
+
+        git_pull(vp_b).unwrap();
+
+        fs::write(clone_a_dir.path().join("conflict.md"), "# Version A\n").unwrap();
+        git_commit(vp_a, "A's change").unwrap();
+        git_push(vp_a).unwrap();
+
+        fs::write(clone_b_dir.path().join("conflict.md"), "# Version B\n").unwrap();
+        git_commit(vp_b, "B's change").unwrap();
+
+        let output = Command::new("git")
+            .args(["pull", "--rebase"])
+            .current_dir(clone_b_dir.path())
+            .output()
+            .unwrap();
+
+        assert!(
+            !output.status.success(),
+            "Expected rebase conflict, but pull succeeded"
+        );
+
+        (bare_dir, clone_a_dir, clone_b_dir)
+    }
+
+    #[test]
+    fn test_conflict_mode_rebase_during_rebase_conflict() {
+        let (_bare, _clone_a, clone_b) = setup_rebase_conflict_pair();
+        let vp_b = clone_b.path().to_str().unwrap();
+
+        assert_eq!(get_conflict_mode(vp_b), "rebase");
+        assert!(is_rebase_in_progress(vp_b));
+        assert!(!is_merge_in_progress(vp_b));
+    }
+
+    #[test]
+    fn test_get_conflict_files_during_rebase() {
+        let (_bare, _clone_a, clone_b) = setup_rebase_conflict_pair();
+        let vp_b = clone_b.path().to_str().unwrap();
+
+        let conflicts = get_conflict_files(vp_b).unwrap();
+        assert!(
+            conflicts.contains(&"conflict.md".to_string()),
+            "Should detect conflict.md during rebase, got: {:?}",
+            conflicts
+        );
+    }
+
+    #[test]
+    fn test_resolve_and_continue_rebase() {
+        let (_bare, _clone_a, clone_b) = setup_rebase_conflict_pair();
+        let vp_b = clone_b.path().to_str().unwrap();
+
+        assert_eq!(get_conflict_mode(vp_b), "rebase");
+
+        git_resolve_conflict(vp_b, "conflict.md", "theirs").unwrap();
+        let remaining = get_conflict_files(vp_b).unwrap();
+        assert!(remaining.is_empty());
+
+        let result = git_commit_conflict_resolution(vp_b);
+        assert!(result.is_ok(), "rebase --continue failed: {:?}", result);
+
+        assert_eq!(get_conflict_mode(vp_b), "none");
+    }
+}

src-tauri/src/git/history.rs

@@ -0,0 +1,349 @@
+use std::path::Path;
+use std::process::Command;
+
+use super::GitCommit;
+
+/// Get git log history for a specific file in the vault.
+pub fn get_file_history(vault_path: &str, file_path: &str) -> Result<Vec<GitCommit>, String> {
+    let vault = Path::new(vault_path);
+    let file = Path::new(file_path);
+
+    let relative = file
+        .strip_prefix(vault)
+        .map_err(|_| format!("File {} is not inside vault {}", file_path, vault_path))?;
+
+    let relative_str = relative
+        .to_str()
+        .ok_or_else(|| "Invalid UTF-8 in path".to_string())?;
+
+    let output = Command::new("git")
+        .args([
+            "log",
+            "--format=%H|%h|%an|%aI|%s",
+            "-n",
+            "20",
+            "--",
+            relative_str,
+        ])
+        .current_dir(vault)
+        .output()
+        .map_err(|e| format!("Failed to run git log: {}", e))?;
+
+    if !output.status.success() {
+        let stderr = String::from_utf8_lossy(&output.stderr);
+        // No commits yet is not an error - just return empty history
+        if stderr.contains("does not have any commits yet") {
+            return Ok(Vec::new());
+        }
+        return Err(format!("git log failed: {}", stderr));
+    }
+
+    let stdout = String::from_utf8_lossy(&output.stdout);
+    let commits = stdout
+        .lines()
+        .filter(|line| !line.is_empty())
+        .filter_map(|line| {
+            // Format: hash|short_hash|author|date|message
+            // Use splitn(5) so message (last) can contain '|'
+            let parts: Vec<&str> = line.splitn(5, '|').collect();
+            if parts.len() != 5 {
+                return None;
+            }
+            let date = chrono::DateTime::parse_from_rfc3339(parts[3])
+                .map(|dt| dt.timestamp())
+                .unwrap_or(0);
+
+            Some(GitCommit {
+                hash: parts[0].to_string(),
+                short_hash: parts[1].to_string(),
+                author: parts[2].to_string(),
+                date,
+                message: parts[4].to_string(),
+            })
+        })
+        .collect();
+
+    Ok(commits)
+}
+
+/// Get git diff for a specific file.
+pub fn get_file_diff(vault_path: &str, file_path: &str) -> Result<String, String> {
+    let vault = Path::new(vault_path);
+    let file = Path::new(file_path);
+
+    let relative = file
+        .strip_prefix(vault)
+        .map_err(|_| format!("File {} is not inside vault {}", file_path, vault_path))?;
+
+    let relative_str = relative
+        .to_str()
+        .ok_or_else(|| "Invalid UTF-8 in path".to_string())?;
+
+    // First try tracked file diff
+    let output = Command::new("git")
+        .args(["diff", "--", relative_str])
+        .current_dir(vault)
+        .output()
+        .map_err(|e| format!("Failed to run git diff: {}", e))?;
+
+    let stdout = String::from_utf8_lossy(&output.stdout).to_string();
+
+    // If no diff (maybe staged or untracked), try diff --cached
+    if stdout.is_empty() {
+        let cached = Command::new("git")
+            .args(["diff", "--cached", "--", relative_str])
+            .current_dir(vault)
+            .output()
+            .map_err(|e| format!("Failed to run git diff --cached: {}", e))?;
+
+        let cached_stdout = String::from_utf8_lossy(&cached.stdout).to_string();
+        if !cached_stdout.is_empty() {
+            return Ok(cached_stdout);
+        }
+
+        // Try showing untracked file as all-new
+        let status = Command::new("git")
+            .args(["status", "--porcelain", "--", relative_str])
+            .current_dir(vault)
+            .output()
+            .map_err(|e| format!("Failed to run git status: {}", e))?;
+
+        let status_out = String::from_utf8_lossy(&status.stdout);
+        if status_out.starts_with("??") {
+            // Untracked file: show entire content as added
+            let content =
+                std::fs::read_to_string(file).map_err(|e| format!("Failed to read file: {}", e))?;
+            let lines: Vec<String> = content.lines().map(|l| format!("+{}", l)).collect();
+            return Ok(format!(
+                "diff --git a/{0} b/{0}\nnew file\n--- /dev/null\n+++ b/{0}\n@@ -0,0 +1,{1} @@\n{2}",
+                relative_str,
+                lines.len(),
+                lines.join("\n")
+            ));
+        }
+    }
+
+    Ok(stdout)
+}
+
+/// Get git diff for a specific file at a given commit (compared to its parent).
+pub fn get_file_diff_at_commit(
+    vault_path: &str,
+    file_path: &str,
+    commit_hash: &str,
+) -> Result<String, String> {
+    let vault = Path::new(vault_path);
+    let file = Path::new(file_path);
+
+    let relative = file
+        .strip_prefix(vault)
+        .map_err(|_| format!("File {} is not inside vault {}", file_path, vault_path))?;
+
+    let relative_str = relative
+        .to_str()
+        .ok_or_else(|| "Invalid UTF-8 in path".to_string())?;
+
+    // Show diff between commit^ and commit for this file
+    let output = Command::new("git")
+        .args([
+            "diff",
+            &format!("{}^", commit_hash),
+            commit_hash,
+            "--",
+            relative_str,
+        ])
+        .current_dir(vault)
+        .output()
+        .map_err(|e| format!("Failed to run git diff: {}", e))?;
+
+    let stdout = String::from_utf8_lossy(&output.stdout).to_string();
+
+    // If diff is empty, it might be the initial commit (no parent).
+    // Fall back to showing the full file content as added.
+    if stdout.is_empty() {
+        let show = Command::new("git")
+            .args(["show", &format!("{}:{}", commit_hash, relative_str)])
+            .current_dir(vault)
+            .output()
+            .map_err(|e| format!("Failed to run git show: {}", e))?;
+
+        if show.status.success() {
+            let content = String::from_utf8_lossy(&show.stdout);
+            let lines: Vec<String> = content.lines().map(|l| format!("+{}", l)).collect();
+            return Ok(format!(
+                "diff --git a/{0} b/{0}\nnew file\n--- /dev/null\n+++ b/{0}\n@@ -0,0 +1,{1} @@\n{2}",
+                relative_str,
+                lines.len(),
+                lines.join("\n")
+            ));
+        }
+    }
+
+    Ok(stdout)
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use crate::git::tests::setup_git_repo;
+    use std::fs;
+    use std::process::Command;
+
+    #[test]
+    fn test_get_file_history_with_commits() {
+        let dir = setup_git_repo();
+        let vault = dir.path();
+        let file = vault.join("test.md");
+
+        fs::write(&file, "# Initial\n").unwrap();
+        Command::new("git")
+            .args(["add", "test.md"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+        Command::new("git")
+            .args(["commit", "-m", "Initial commit"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+
+        fs::write(&file, "# Updated\n\nNew content.").unwrap();
+        Command::new("git")
+            .args(["add", "test.md"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+        Command::new("git")
+            .args(["commit", "-m", "Update test"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+
+        let history = get_file_history(vault.to_str().unwrap(), file.to_str().unwrap()).unwrap();
+
+        assert_eq!(history.len(), 2);
+        assert_eq!(history[0].message, "Update test");
+        assert_eq!(history[1].message, "Initial commit");
+        assert_eq!(history[0].author, "Test User");
+        assert!(!history[0].hash.is_empty());
+        assert!(!history[0].short_hash.is_empty());
+    }
+
+    #[test]
+    fn test_get_file_history_no_commits() {
+        let dir = setup_git_repo();
+        let vault = dir.path();
+        let file = vault.join("new.md");
+        fs::write(&file, "# New\n").unwrap();
+
+        let history = get_file_history(vault.to_str().unwrap(), file.to_str().unwrap()).unwrap();
+
+        assert!(history.is_empty());
+    }
+
+    #[test]
+    fn test_get_file_diff() {
+        let dir = setup_git_repo();
+        let vault = dir.path();
+        let file = vault.join("diff-test.md");
+
+        fs::write(&file, "# Test\n\nOriginal content.").unwrap();
+        Command::new("git")
+            .args(["add", "diff-test.md"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+        Command::new("git")
+            .args(["commit", "-m", "Add diff-test"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+
+        fs::write(&file, "# Test\n\nModified content.").unwrap();
+
+        let diff = get_file_diff(vault.to_str().unwrap(), file.to_str().unwrap()).unwrap();
+
+        assert!(!diff.is_empty());
+        assert!(diff.contains("-Original content."));
+        assert!(diff.contains("+Modified content."));
+    }
+
+    #[test]
+    fn test_get_file_diff_at_commit() {
+        let dir = setup_git_repo();
+        let vault = dir.path();
+        let file = vault.join("diff-at-commit.md");
+
+        fs::write(&file, "# First\n\nOriginal content.").unwrap();
+        Command::new("git")
+            .args(["add", "diff-at-commit.md"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+        Command::new("git")
+            .args(["commit", "-m", "First commit"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+
+        fs::write(&file, "# First\n\nModified content.").unwrap();
+        Command::new("git")
+            .args(["add", "diff-at-commit.md"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+        Command::new("git")
+            .args(["commit", "-m", "Second commit"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+
+        // Get hash of second commit
+        let log = Command::new("git")
+            .args(["log", "--format=%H", "-1"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+        let hash = String::from_utf8_lossy(&log.stdout).trim().to_string();
+
+        let diff = get_file_diff_at_commit(vault.to_str().unwrap(), file.to_str().unwrap(), &hash)
+            .unwrap();
+
+        assert!(!diff.is_empty());
+        assert!(diff.contains("-Original content."));
+        assert!(diff.contains("+Modified content."));
+    }
+
+    #[test]
+    fn test_get_file_diff_at_initial_commit() {
+        let dir = setup_git_repo();
+        let vault = dir.path();
+        let file = vault.join("initial.md");
+
+        fs::write(&file, "# Initial\n\nHello world.").unwrap();
+        Command::new("git")
+            .args(["add", "initial.md"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+        Command::new("git")
+            .args(["commit", "-m", "Initial commit"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+
+        let log = Command::new("git")
+            .args(["log", "--format=%H", "-1"])
+            .current_dir(vault)
+            .output()
+            .unwrap();
+        let hash = String::from_utf8_lossy(&log.stdout).trim().to_string();
+
+        let diff = get_file_diff_at_commit(vault.to_str().unwrap(), file.to_str().unwrap(), &hash)
+            .unwrap();
+
+        assert!(!diff.is_empty());
+        assert!(diff.contains("+# Initial"));
+        assert!(diff.contains("+Hello world."));
+    }
+}

src-tauri/src/git/mod.rs

@@ -0,0 +1,352 @@
+mod commit;
+mod conflict;
+mod history;
+mod pulse;
+mod remote;
+mod status;
+
+use std::path::Path;
+use std::process::Command;
+
+pub use commit::git_commit;
+pub use conflict::{
+    get_conflict_files, get_conflict_mode, git_commit_conflict_resolution, git_resolve_conflict,
+    is_merge_in_progress, is_rebase_in_progress,
+};
+pub use history::{get_file_diff, get_file_diff_at_commit, get_file_history};
+pub use pulse::{get_last_commit_info, get_vault_pulse, LastCommitInfo, PulseCommit, PulseFile};
+pub use remote::{git_pull, git_push, has_remote, GitPullResult, GitPushResult};
+pub use status::{get_modified_files, ModifiedFile};
+
+use serde::Serialize;
+
+#[derive(Debug, Serialize, Clone)]
+pub struct GitCommit {
+    pub hash: String,
+    #[serde(rename = "shortHash")]
+    pub short_hash: String,
+    pub message: String,
+    pub author: String,
+    pub date: i64,
+}
+
+/// Initialize a new git repository, stage all files, and create an initial commit.
+pub fn init_repo(path: &str) -> Result<(), String> {
+    let dir = Path::new(path);
+
+    run_git(dir, &["init"])?;
+    ensure_author_config(dir)?;
+
+    // Write .gitignore before the first commit so machine-specific and
+    // macOS metadata files are never tracked and don't cause conflicts.
+    let gitignore_path = dir.join(".gitignore");
+    if !gitignore_path.exists() {
+        std::fs::write(
+            &gitignore_path,
+            "# Laputa app files (machine-specific, never commit)\n\
+.laputa-cache.json\n\
+.laputa/settings.json\n\
+\n\
+# macOS\n\
+.DS_Store\n\
+.AppleDouble\n\
+.LSOverride\n\
+\n\
+# Thumbnails\n\
+._*\n\
+\n\
+# Editors\n\
+.vscode/\n\
+.idea/\n\
+*.swp\n\
+*.swo\n",
+        )
+        .map_err(|e| format!("Failed to write .gitignore: {}", e))?;
+    }
+
+    run_git(dir, &["add", "."])?;
+    run_git(dir, &["commit", "-m", "Initial vault setup"])?;
+
+    Ok(())
+}
+
+/// Run a git command in the given directory, returning an error on failure.
+fn run_git(dir: &Path, args: &[&str]) -> Result<(), String> {
+    let output = Command::new("git")
+        .args(args)
+        .current_dir(dir)
+        .output()
+        .map_err(|e| format!("Failed to run git {}: {}", args[0], e))?;
+
+    if output.status.success() {
+        return Ok(());
+    }
+
+    Err(format!(
+        "git {} failed: {}",
+        args[0],
+        String::from_utf8_lossy(&output.stderr)
+    ))
+}
+
+/// Set local user.name and user.email if not already configured.
+fn ensure_author_config(dir: &Path) -> Result<(), String> {
+    for (key, fallback) in [("user.name", "Laputa"), ("user.email", "vault@laputa.app")] {
+        let check = Command::new("git")
+            .args(["config", key])
+            .current_dir(dir)
+            .output()
+            .map_err(|e| format!("Failed to check git config: {}", e))?;
+
+        let value = String::from_utf8_lossy(&check.stdout);
+        if !check.status.success() || value.trim().is_empty() {
+            run_git(dir, &["config", key, fallback])?;
+        }
+    }
+    Ok(())
+}
+
+/// Extract "owner/repo" from a GitHub remote URL.
+/// Supports HTTPS (https://github.com/owner/repo.git) and
+/// SSH (git@github.com:owner/repo.git) formats.
+fn parse_github_repo_path(url: &str) -> Option<String> {
+    let trimmed = url.trim();
+
+    // SSH format: git@github.com:owner/repo.git
+    if let Some(rest) = trimmed.strip_prefix("git@github.com:") {
+        let path = rest.strip_suffix(".git").unwrap_or(rest);
+        if path.contains('/') {
+            return Some(path.to_string());
+        }
+    }
+
+    // HTTPS format: https://github.com/owner/repo.git
+    // Also handle token-embedded URLs: https://token@github.com/owner/repo.git
+    if trimmed.contains("github.com/") {
+        let after = trimmed.split("github.com/").nth(1)?;
+        let path = after.strip_suffix(".git").unwrap_or(after);
+        if path.contains('/') {
+            return Some(path.to_string());
+        }
+    }
+
+    None
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use std::fs;
+    use std::process::Command;
+    use tempfile::TempDir;
+
+    pub(crate) fn setup_git_repo() -> TempDir {
+        let dir = TempDir::new().unwrap();
+        let path = dir.path();
+
+        Command::new("git")
+            .args(["init"])
+            .current_dir(path)
+            .output()
+            .unwrap();
+
+        Command::new("git")
+            .args(["config", "user.email", "test@test.com"])
+            .current_dir(path)
+            .output()
+            .unwrap();
+
+        Command::new("git")
+            .args(["config", "user.name", "Test User"])
+            .current_dir(path)
+            .output()
+            .unwrap();
+
+        dir
+    }
+
+    /// Set up a bare "remote" and a clone that acts as the working vault.
+    pub(crate) fn setup_remote_pair() -> (TempDir, TempDir, TempDir) {
+        let bare_dir = TempDir::new().unwrap();
+        let bare = bare_dir.path();
+
+        Command::new("git")
+            .args(["init", "--bare"])
+            .current_dir(bare)
+            .output()
+            .unwrap();
+
+        let clone_a_dir = TempDir::new().unwrap();
+        Command::new("git")
+            .args(["clone", bare.to_str().unwrap(), "."])
+            .current_dir(clone_a_dir.path())
+            .output()
+            .unwrap();
+        for cmd in &[
+            &["config", "user.email", "a@test.com"][..],
+            &["config", "user.name", "User A"][..],
+        ] {
+            Command::new("git")
+                .args(*cmd)
+                .current_dir(clone_a_dir.path())
+                .output()
+                .unwrap();
+        }
+
+        let clone_b_dir = TempDir::new().unwrap();
+        Command::new("git")
+            .args(["clone", bare.to_str().unwrap(), "."])
+            .current_dir(clone_b_dir.path())
+            .output()
+            .unwrap();
+        for cmd in &[
+            &["config", "user.email", "b@test.com"][..],
+            &["config", "user.name", "User B"][..],
+        ] {
+            Command::new("git")
+                .args(*cmd)
+                .current_dir(clone_b_dir.path())
+                .output()
+                .unwrap();
+        }
+
+        (bare_dir, clone_a_dir, clone_b_dir)
+    }
+
+    #[test]
+    fn test_init_repo_creates_git_directory() {
+        let dir = TempDir::new().unwrap();
+        let vault = dir.path().join("new-vault");
+        fs::create_dir_all(&vault).unwrap();
+        fs::write(vault.join("note.md"), "# Test\n").unwrap();
+
+        init_repo(vault.to_str().unwrap()).unwrap();
+
+        assert!(vault.join(".git").exists());
+    }
+
+    #[test]
+    fn test_init_repo_creates_initial_commit() {
+        let dir = TempDir::new().unwrap();
+        let vault = dir.path().join("new-vault");
+        fs::create_dir_all(&vault).unwrap();
+        fs::write(vault.join("note.md"), "# Test\n").unwrap();
+
+        init_repo(vault.to_str().unwrap()).unwrap();
+
+        let log = Command::new("git")
+            .args(["log", "--oneline"])
+            .current_dir(&vault)
+            .output()
+            .unwrap();
+        let log_str = String::from_utf8_lossy(&log.stdout);
+        assert!(log_str.contains("Initial vault setup"));
+    }
+
+    #[test]
+    fn test_init_repo_stages_all_files() {
+        let dir = TempDir::new().unwrap();
+        let vault = dir.path().join("new-vault");
+        fs::create_dir_all(vault.join("sub")).unwrap();
+        fs::write(vault.join("note.md"), "# Test\n").unwrap();
+        fs::write(vault.join("sub/nested.md"), "# Nested\n").unwrap();
+
+        init_repo(vault.to_str().unwrap()).unwrap();
+
+        let status = Command::new("git")
+            .args(["status", "--porcelain"])
+            .current_dir(&vault)
+            .output()
+            .unwrap();
+        assert!(
+            String::from_utf8_lossy(&status.stdout).trim().is_empty(),
+            "All files should be committed"
+        );
+    }
+
+    #[test]
+    fn test_init_repo_creates_gitignore_with_ds_store() {
+        let dir = TempDir::new().unwrap();
+        let vault = dir.path().join("new-vault");
+        fs::create_dir_all(&vault).unwrap();
+        fs::write(vault.join("note.md"), "# Test\n").unwrap();
+
+        init_repo(vault.to_str().unwrap()).unwrap();
+
+        let gitignore = vault.join(".gitignore");
+        assert!(
+            gitignore.exists(),
+            ".gitignore should be created by init_repo"
+        );
+        let content = fs::read_to_string(&gitignore).unwrap();
+        assert!(
+            content.contains(".DS_Store"),
+            ".gitignore should exclude .DS_Store"
+        );
+        assert!(
+            content.contains(".laputa-cache.json"),
+            ".gitignore should exclude .laputa-cache.json"
+        );
+        assert!(
+            content.contains(".laputa/settings.json"),
+            ".gitignore should exclude settings.json"
+        );
+    }
+
+    #[test]
+    fn test_init_repo_does_not_overwrite_existing_gitignore() {
+        let dir = TempDir::new().unwrap();
+        let vault = dir.path().join("new-vault");
+        fs::create_dir_all(&vault).unwrap();
+        fs::write(vault.join("note.md"), "# Test\n").unwrap();
+        fs::write(vault.join(".gitignore"), "custom-rule\n").unwrap();
+
+        init_repo(vault.to_str().unwrap()).unwrap();
+
+        let content = fs::read_to_string(vault.join(".gitignore")).unwrap();
+        assert_eq!(
+            content, "custom-rule\n",
+            "existing .gitignore should not be overwritten"
+        );
+    }
+
+    #[test]
+    fn test_parse_github_repo_path_https() {
+        assert_eq!(
+            parse_github_repo_path("https://github.com/owner/repo.git"),
+            Some("owner/repo".to_string())
+        );
+        assert_eq!(
+            parse_github_repo_path("https://github.com/owner/repo"),
+            Some("owner/repo".to_string())
+        );
+    }
+
+    #[test]
+    fn test_parse_github_repo_path_ssh() {
+        assert_eq!(
+            parse_github_repo_path("git@github.com:owner/repo.git"),
+            Some("owner/repo".to_string())
+        );
+        assert_eq!(
+            parse_github_repo_path("git@github.com:owner/repo"),
+            Some("owner/repo".to_string())
+        );
+    }
+
+    #[test]
+    fn test_parse_github_repo_path_token_embedded() {
+        assert_eq!(
+            parse_github_repo_path("https://gho_abc123@github.com/owner/repo.git"),
+            Some("owner/repo".to_string())
+        );
+    }
+
+    #[test]
+    fn test_parse_github_repo_path_non_github() {
+        assert_eq!(
+            parse_github_repo_path("https://gitlab.com/owner/repo.git"),
+            None
+        );
+    }
+}