tolaria/docs/ARCHITECTURE.md

Architecture

Laputa is a personal knowledge and life management desktop app. It reads a vault of markdown files with YAML frontmatter and presents them in a four-panel UI inspired by Bear Notes.

Design Principles

Filesystem as the single source of truth

The vault is a folder of plain markdown files. The app never owns the data — it only reads and writes files. The cache, React state, and any in-memory representation are always derived from the filesystem and must be reconstructible by deleting them. When in doubt, the file on disk wins.

Convention over configuration

Laputa is opinionated. Standard field names (type:, status:, url:, Workspace:, Belongs to:, start_date:, end_date:) have well-defined meanings and trigger specific UI behavior — without any setup. This is not convention instead of configuration: users can override defaults via config files in their vault (e.g. config/relations.md, config/semantic-properties.md). But the defaults work out of the box, and most users never need to touch them.

This principle directly serves AI-readability: the more structure comes from shared conventions rather than per-user custom configurations, the easier it is for an AI agent to understand and navigate the vault correctly — without needing bespoke instructions for every setup.

No hardcoded exceptions

No field names, folder paths, or vault-specific values should be hardcoded in the application source code. What can be a convention should be a convention. What needs to be configurable should live in a file. Relationship fields are detected dynamically by checking whether values contain [[wikilinks]] — no hardcoded field name lists.

AI-first knowledge graph

Notes are not just documents — they are nodes in a structured graph of people, projects, events, responsibilities, and ideas. Every design decision should ask: "Does this make the knowledge graph easier for a human and an AI to navigate?" Conventions that are legible to both are better than conventions that are legible only to one.

Three representations, one authority

Vault data exists in three forms simultaneously:

1. Filesystem — the .md files on disk. This is the single source of truth.
2. Cache — ~/.laputa/cache/<hash>.json, an index for fast startup. Always reconstructible from the filesystem.
3. React state — the in-memory VaultEntry[] during a session. Always derived from the cache or filesystem.

These must never diverge permanently. If they do, the filesystem wins and the cache/state are rebuilt.

flowchart LR
    FS["🗂️ Filesystem\n.md files on disk\n(source of truth)"]
    Cache["⚡ Cache\n~/.laputa/cache/\n(fast startup index)"]
    RS["⚛️ React State\nVaultEntry[]\n(in-memory session)"]

    FS -->|"scan_vault_cached()"| Cache
    Cache -->|"useVaultLoader on load"| RS
    FS -->|"reload_vault (full rescan)"| RS
    RS -.->|"write via Tauri IPC first"| FS

    style FS fill:#d4edda,stroke:#28a745,color:#000
    style Cache fill:#fff3cd,stroke:#ffc107,color:#000
    style RS fill:#cce5ff,stroke:#004085,color:#000

Ownership rules

Layer	Owner	Writes to	Reads from
Filesystem	Tauri Rust commands (save_note_content, update_frontmatter, etc.)	Disk	—
Cache	scan_vault_cached() in vault/cache.rs	~/.laputa/cache/	Filesystem + git diff
React state	useVaultLoader + useEntryActions + useNoteActions	In-memory entries	Cache (on load), filesystem (on reload)

Invariants

1. Disk-first writes: All functions that change vault data must write to disk (via Tauri IPC) before updating React state. This ensures that if the disk write fails, React state remains consistent with what's actually on disk.
2. Optimistic UI with rollback: Where responsiveness matters (e.g. persistOptimistic in useNoteCreation), state may update before disk confirmation — but a failure callback must revert the optimistic state.
3. No orphan state updates: Never call updateEntry() before the corresponding handleUpdateFrontmatter() or handleDeleteProperty() has resolved. The three functions in useEntryActions (handleCustomizeType, handleRenameSection, handleToggleTypeVisibility) follow this rule — disk write first, then state update.
4. Recovery via reload: If state ever diverges from disk (crash, external edit, race condition), Reload Vault (Cmd+K → "Reload Vault") invalidates the cache and does a full filesystem rescan via the reload_vault Tauri command, replacing all React state. The reload_vault_entry command can re-read a single file.
5. Cache is disposable: The reload_vault command deletes the cache file before rescanning, guaranteeing fresh data. The cache never contains data that doesn't exist on the filesystem.

Tech Stack

Layer	Technology	Version
Desktop shell	Tauri v2	2.10.0
Frontend	React + TypeScript	React 19, TS 5.9
Editor	BlockNote	0.46.2
Raw editor	CodeMirror 6	-
Styling	Tailwind CSS v4 + CSS variables	4.1.18
UI primitives	Radix UI + shadcn/ui	-
Icons	Phosphor Icons + Lucide	-
Build	Vite	7.3.1
Backend language	Rust (edition 2021)	1.77.2
Frontmatter parsing	gray_matter	0.2
AI (in-app chat)	Anthropic Claude API (Haiku 3.5 default)	-
AI (agent panel)	Claude CLI subprocess (streaming NDJSON)	-
Search	qmd (keyword + semantic + hybrid)	-
MCP	@modelcontextprotocol/sdk	1.0
Tests	Vitest (unit), Playwright (E2E/smoke), cargo test (Rust)	-
Package manager	pnpm	-

System Overview

flowchart TD
    subgraph TW["Tauri v2 Window"]
        subgraph FE["React Frontend"]
            App["App.tsx (orchestrator)"]
            WS["WelcomeScreen\n(onboarding)"]
            SB["Sidebar\n(navigation + filters + types)"]
            NL["NoteList / PulseView\n(filtered list / activity)"]
            ED["Editor\n(BlockNote + tabs + diff + raw)"]
            IN["Inspector\n(metadata + relationships)"]
            AIC["AIChatPanel\n(API-based chat)"]
            AIP["AiPanel\n(Claude CLI agent + tools)"]
            SP["SearchPanel\n(keyword/semantic/hybrid)"]
            ST["StatusBar\n(vault picker + sync + version)"]
            CP["CommandPalette\n(Cmd+K launcher)"]

            App --> WS & SB & NL & ED & SP & ST & CP
            ED --> IN & AIC & AIP
        end

        subgraph RB["Rust Backend"]
            LIB["lib.rs → 64 Tauri commands"]
            VAULT["vault/"]
            FM["frontmatter/"]
            GIT["git/"]
            GH["github/"]
            THEME["theme/"]
            SEARCH["search.rs + indexing.rs"]
            CLI["claude_cli.rs"]
        end

        subgraph EXT["External Services"]
            ANTH["Anthropic API\n(Claude chat)"]
            CCLI["Claude CLI\n(agent subprocess)"]
            MCP["MCP Server\n(ws://9710, 9711)"]
            QMD["qmd\n(search engine)"]
            GHAPI["GitHub API\n(OAuth, repos, clone)"]
        end

        FE -->|"Tauri IPC"| RB
        FE -->|"Vite Proxy / WS"| EXT
    end

    style FE fill:#e8f4fd,stroke:#2196f3,color:#000
    style RB fill:#fff8e1,stroke:#ff9800,color:#000
    style EXT fill:#f3e5f5,stroke:#9c27b0,color:#000

Four-Panel Layout

┌────────┬─────────────┬─────────────────────────┬────────────┐
│Sidebar │ Note List   │ Editor                  │ Inspector  │
│(250px) │ (300px)     │ (flex-1)                │ (280px)    │
│        │ OR          │                         │ OR         │
│ All    │ Pulse View  │ [Tab Bar]               │ AI Chat    │
│ Favs   │             │ [Breadcrumb Bar]        │ OR         │
│ Changes│ [Search]    │                         │ AI Agent   │
│ Pulse  │ [Sort/Filt] │ # My Note               │            │
│        │             │                         │ Context    │
│Projects│ Note 1      │ Content here...         │ Messages   │
│Experim.│ Note 2      │ (BlockNote or Raw)      │ Actions    │
│Respons.│ Note 3      │                         │ Input      │
│People  │ ...         │                         │            │
│Events  │             │                         │            │
│Topics  │             │                         │            │
├────────┴─────────────┴─────────────────────────┴────────────┤
│ StatusBar: v0.4.2 │ main │ Synced 2m ago │ Vault: ~/Laputa │
└──────────────────────────────────────────────────────────────┘

• Sidebar (150-400px, resizable): Top-level filters (All Notes, Favorites, Changes, Pulse) and collapsible type-based section groups. Each type can have a custom icon, color, sort, and visibility set via its type document in type/.
• Note List / Pulse View (200-500px, resizable): When a section group or filter is selected, shows filtered notes with snippets, modified dates, and status indicators. When Pulse filter is active, shows PulseView — a chronological git activity feed grouped by day.
• Editor (flex, fills remaining space): Tab bar with modified dots, breadcrumb bar with word count, BlockNote rich text editor with wikilink support. Can toggle to diff view (modified files) or raw CodeMirror view. Decomposed into Editor (orchestrator), EditorContent, EditorRightPanel, SingleEditorView, with hooks useDiffMode, useEditorFocus, useEditorSave, useRawMode.
• Inspector / AI Chat / AI Agent (200-500px or 40px collapsed): Toggles between Inspector (frontmatter, relationships, instances, backlinks, git history), AI Chat panel (API-based), and AI Agent panel (Claude CLI subprocess with tool execution). The Sparkle icon in the breadcrumb bar toggles between them. When viewing a Type note, the Inspector shows an Instances section listing all notes of that type (sorted by modified_at desc, capped at 50).

Panels are separated by ResizeHandle components that support drag-to-resize.

AI System

Laputa has two AI interfaces with distinct architectures:

AI Chat (AIChatPanel)

Simple chat mode — no tool execution, streaming text responses.

1. Frontend (AIChatPanel + useAIChat hook) — UI and state management
2. API Proxy (Vite middleware in dev, Rust ai_chat command in Tauri) — routes to Anthropic
3. Context picker — selected notes sent as system context with token estimation

AI Agent (AiPanel)

Full agent mode — spawns Claude CLI as a subprocess with tool access and MCP vault integration.

1. Frontend (AiPanel + useAiAgent hook) — streaming UI with reasoning blocks, tool action cards, and response display
2. Backend (claude_cli.rs) — spawns claude binary with --output-format stream-json, parses NDJSON events
3. MCP Integration — passes vault MCP config via --mcp-config flag so the agent can search, read, and modify vault notes

Agent Event Flow

sequenceDiagram
    participant U as User (AiPanel)
    participant FE as useAiAgent (Frontend)
    participant R as claude_cli.rs (Rust)
    participant C as Claude CLI
    participant V as Vault (MCP)

    U->>FE: sendMessage(text, references)
    FE->>FE: buildContextSnapshot(activeNote, linkedNotes, openTabs)
    FE->>R: invoke('stream_claude_agent', {message, systemPrompt, vaultPath})
    R->>C: spawn claude -p <msg> --output-format stream-json --mcp-config <json>

    loop NDJSON stream
        C-->>R: Init | TextDelta | ThinkingDelta | ToolStart | ToolDone | Result | Done
        R-->>FE: emit("claude-agent-stream", event)
        alt TextDelta
            FE->>FE: accumulate response (revealed on Done)
        else ThinkingDelta
            FE->>FE: show reasoning block (collapses on first text)
        else ToolStart
            FE->>FE: add AiActionCard with spinner
        else ToolDone
            FE->>FE: update card with output
        else Done
            FE->>FE: reveal full response
            FE->>FE: detect file operations → reload vault if needed
        end
    end

    C->>V: MCP tool calls (search_notes, read_note, edit_note…)
    V-->>C: tool results

File Operation Detection

When the agent writes or edits vault files, useAiAgent detects this from tool inputs (Write/Edit tool JSON) and calls onFileCreated or onFileModified callbacks to trigger vault reload.

Context Building

Both AI modes use context from the active note and linked entries. The agent panel (ai-context.ts) builds a structured JSON snapshot:

{
  "activeNote": { "path", "title", "type", "frontmatter", "content" },
  "linkedNotes": [{ "path", "title", "content" }],
  "openTabs": [{ "title", "snippet" }],
  "vaultMetadata": { "noteTypes", "stats", "filter" },
  "references": [{ "title", "path", "type" }]
}

Token budget: 60% of 180k context limit (~108k tokens max). Active note gets priority, then linked notes, then truncation.

Models (Chat mode)

Model	ID	Use case
Haiku 3.5	claude-3-5-haiku-20241022	Fast, cheap — default
Sonnet 4	claude-sonnet-4-20250514	Balanced
Opus 4	claude-opus-4-20250514	Most capable

API Key Management

• Stored in app settings (~/.config/com.laputa.app/settings.json) under anthropic_key
• Configurable via Settings panel (also supports openai_key, google_key)
• Claude CLI (agent mode) uses its own authentication — no API key needed

MCP Server

The MCP server (mcp-server/) exposes vault operations as tools for AI assistants (Claude Code, Cursor, or any MCP-compatible client).

Tool Surface (14 tools)

Tool	Params	Description
open_note	path	Open and read a note by relative path
read_note	path	Read note content (alias for open_note)
create_note	path, title, [type]	Create new note with title and optional type frontmatter
search_notes	query, [limit]	Search notes by title or content substring
append_to_note	path, text	Append text to end of existing note
edit_note_frontmatter	path, patch	Merge key-value patch into YAML frontmatter
delete_note	path	Delete a note file from the vault
link_notes	source_path, property, target_title	Add a target to an array property in frontmatter
list_notes	[type_filter], [sort]	List all notes, optionally filtered by type
vault_context	—	Get vault summary: entity types + 20 recent notes + configFiles
ui_open_note	path	Open a note in the Laputa UI editor
ui_open_tab	path	Open a note in a new UI tab
ui_highlight	element, [path]	Highlight a UI element (editor, tab, properties, notelist)
ui_set_filter	type	Set the sidebar filter to a specific type

Transports

• stdio — standard MCP transport for Claude Code / Cursor (node mcp-server/index.js)
• WebSocket — live bridge for Laputa app integration:
  • Port 9710: Tool bridge — AI/Claude clients call vault tools here
  • Port 9711: UI bridge — Frontend listens for UI action broadcasts from MCP tools

Auto-Registration

On app startup, Laputa automatically registers itself as an MCP server in:

• ~/.claude/mcp.json (Claude Code)
• ~/.cursor/mcp.json (Cursor)

Registration is non-destructive (additive, preserves other servers) and uses upsert semantics. The useMcpStatus hook tracks registration state (checking | installed | not_installed | no_claude_cli).

Architecture

flowchart TD
    subgraph MCP["MCP Server (Node.js) — spawned by Tauri on startup"]
        IDX["index.js"]
        VAULT["vault.js\n(findMarkdownFiles, readNote, createNote,\nsearchNotes, appendToNote, editNoteFrontmatter,\ndeleteNote, linkNotes, listNotes, vaultContext)"]
        WSB["ws-bridge.js"]

        IDX -->|"stdio transport"| STDIO["Claude Code / Cursor"]
        IDX --> VAULT
        IDX --> WSB
        WSB -->|"port 9710 — tool bridge"| AI["AI Clients\n(Claude Code, external)"]
        WSB -->|"port 9711 — UI bridge"| FE["Frontend\n(useAiActivity)"]
    end

    TAURI["Tauri (mcp.rs)"] -->|"spawn on startup"| MCP
    TAURI -->|"auto-register"| CFG["~/.claude/mcp.json\n~/.cursor/mcp.json"]

WebSocket Bridge

flowchart LR
    FE["Frontend\n(useMcpBridge)"] <-->|"ws://localhost:9710"| WSB["ws-bridge.js"]
    WSB <--> VAULT["vault.js"]
    STDIO["MCP stdio tools"] <-->|"ws://localhost:9711"| FE2["Frontend UI actions\n(useAiActivity)"]

Tool bridge protocol (port 9710):

• Request: { "id": "req-1", "tool": "search_notes", "args": { "query": "test" } }
• Response: { "id": "req-1", "result": { ... } }

UI bridge protocol (port 9711):

• Broadcast: { "type": "ui_action", "action": "open_note", "path": "..." }
• useAiActivity hook receives these and applies them (highlight with 800ms feedback, open note, set filter, etc.)

Rust MCP Module

src-tauri/src/mcp.rs manages the MCP server lifecycle:

Function	Purpose
spawn_ws_bridge(vault_path)	Spawns ws-bridge.js as child process with VAULT_PATH env
register_mcp(vault_path)	Writes Laputa entry to Claude Code and Cursor MCP configs
upsert_mcp_config(path, entry)	Atomic config file update (create/merge, preserves others)

The WsBridgeChild state wrapper in lib.rs ensures the bridge process is killed on app exit via RunEvent::Exit handler.

Search & Indexing

Search Engine

Search uses the external qmd binary (semantic search engine) with three modes:

Mode	Command	Description
keyword	qmd search	Term matching (default)
semantic	qmd vsearch	Vector similarity search
hybrid	qmd query	Combined keyword + semantic

Indexing Flow

flowchart TD
    A([Vault opened]) --> B[check_index_status]
    B --> C{Index status?}
    C -->|Fresh| D[run_incremental_update\ngit diff since last commit]
    C -->|Stale / Missing| E

    subgraph E[Full Indexing — start_indexing]
        E1["Phase 1: qmd update\n(scan all .md files)"]
        E2["Phase 2: qmd embed\n(generate vector embeddings)"]
        E1 --> E2
    end

    E --> F[Save .laputa-index.json\nlast_indexed_commit + timestamp]
    D --> G([Search ready])
    F --> G

    E2 -.->|failure is non-fatal| G
    G --> H{Search mode}
    H -->|keyword| I[qmd search]
    H -->|semantic| J[qmd vsearch]
    H -->|hybrid| K[qmd query]

Embedding failure is non-fatal — keyword search still works.

qmd Binary Resolution

1. Bundled macOS app resource: <app>/Contents/Resources/qmd/qmd
2. Dev mode: CARGO_MANIFEST_DIR/resources/qmd/qmd
3. System locations: ~/.bun/bin/qmd, /usr/local/bin/qmd, /opt/homebrew/bin/qmd
4. PATH lookup via which qmd
5. Auto-install via bun install -g qmd if missing

Vault Cache System

The vault cache (src-tauri/src/vault/cache.rs) accelerates vault scanning using git-based incremental updates.

Cache File

~/.laputa/cache/<vault-hash>.json — stored outside the vault directory so it never pollutes the user's git repo. The vault path is hashed (via DefaultHasher) to produce a deterministic filename. Stores: vault path, git HEAD commit hash, all VaultEntry objects. Version: v5 (bumped on VaultEntry field changes to force full rescan). Writes are atomic (write to .tmp then rename). Legacy .laputa-cache.json files inside the vault are auto-migrated and deleted on first run.

Three Cache Strategies

flowchart TD
    A([scan_vault_cached]) --> B{Cache exists\nand valid?}
    B -->|No / Corrupt| C["🔴 Full Scan\nwalkdir all .md files\n→ full parse"]
    B -->|Yes| D{Git HEAD\nmatches cache?}
    D -->|Same commit| E["🟢 Cache Hit\ngit status --porcelain\n→ re-parse only uncommitted changes"]
    D -->|Different commit| F["🟡 Incremental Update\ngit diff old..new --name-only\n→ selective re-parse of changed files"]

    C --> G[Write cache atomically\n.tmp → rename]
    E --> G
    F --> G
    G --> H([VaultEntry list ready])

Theme System

See THEMING.md for the full theme system documentation.

Two-Layer Architecture

1. Global CSS variables (src/index.css): App-wide colors, borders, backgrounds. Bridged to Tailwind v4 via @theme inline.
2. Editor theme (src/theme.json): BlockNote-specific typography. Flattened to CSS vars by useEditorTheme.

Vault-Based Themes

Themes are markdown notes in the theme/ folder with type: Theme frontmatter (Is A: Theme accepted as legacy alias). Each frontmatter property becomes a CSS variable. Managed by useThemeManager hook and the src-tauri/src/theme/ Rust module (create, seed, defaults).

• Vault settings: .laputa/settings.json stores the active theme reference
• Legacy support: _themes/*.json files still supported for backward compatibility
• Built-in themes: Default (light), Dark, Minimal — auto-seeded on vault open
• Live preview: Re-applies when the active theme note is saved

Vault Management

Vault List

Persisted at ~/.config/com.laputa.app/vaults.json:

{
  "vaults": [{ "label": "My Vault", "path": "/path/to/vault" }],
  "active_vault": "/path/to/vault",
  "hidden_defaults": []
}

Managed by useVaultSwitcher hook. Switching vaults closes all tabs and resets sidebar.

Vault Config

Per-vault UI settings stored in config/ui.config.md (YAML frontmatter in a markdown note):

• zoom: Float zoom level (0.8–1.5)
• view_mode: "all" | "editor-list" | "editor-only"
• editor_mode: "raw" | "preview" (persists across tab switches and sessions)
• tag_colors, status_colors: Custom color overrides
• property_display_modes: Property display preferences

Getting Started Vault

On first launch, useOnboarding checks if the default vault exists. If not, shows WelcomeScreen with two options:

• Create Getting Started vault → calls create_getting_started_vault() Tauri command
• Open an existing folder → system file picker

GitHub OAuth Integration

Implements GitHub Device Authorization Flow for cloning/creating GitHub-backed vaults.

Flow:

1. User clicks "Login with GitHub" in Settings panel
2. github_device_flow_start() returns a user code + verification URL
3. User authorizes at github.com/login/device
4. App polls github_device_flow_poll() until authorized
5. Token stored in ~/.config/com.laputa.app/settings.json

Vault operations:

• GitHubVaultModal: Clone existing repo or create new private/public repo
• clone_repo(): Clones with token-injected HTTPS URL
• Token persists for future git push/pull operations

Pulse View

PulseView is a git activity feed that replaces the NoteList when the Pulse filter is selected.

• Groups commits by day ("Today", "Yesterday", or full date)
• Shows commit message, short hash, timestamp, and changed files
• Files have status icons (added/modified/deleted) and are clickable to open in editor
• Links to GitHub commits when githubUrl is available
• Infinite scroll pagination (20 commits per page) via Intersection Observer

Backend: get_vault_pulse Tauri command parses git log with --name-status.

Data Flow

Startup Sequence

sequenceDiagram
    participant T as Tauri (Rust)
    participant A as App.tsx
    participant VL as useVaultLoader
    participant MCP as MCP Server
    participant U as User

    T->>T: run_startup_tasks()<br/>(purge trash, seed themes, register MCP)
    T->>MCP: spawn_ws_bridge() — ports 9710 + 9711
    T->>A: App mounts

    A->>A: useOnboarding — vault exists?
    alt Vault missing
        A-->>U: WelcomeScreen
    else Vault found
        A->>VL: useVaultLoader fires
        VL->>T: invoke('list_vault') → scan_vault_cached()
        T-->>VL: VaultEntry[]
        VL->>T: invoke('get_modified_files')
        VL->>T: useMcpStatus — register if needed
        VL->>T: useThemeManager — load active theme
        VL->>T: useIndexing — incremental update if stale
        VL-->>A: entries ready
    end

    U->>A: clicks note in NoteList
    A->>T: invoke('get_note_content')
    T-->>A: raw markdown
    A->>A: splitFrontmatter → [yaml, body]
    A->>A: preProcessWikilinks(body)
    A->>A: tryParseMarkdownToBlocks()
    A->>A: injectWikilinks(blocks)
    A-->>U: Editor renders note

Auto-Save Flow

flowchart LR
    A["✏️ Editor content changes"] --> B["useEditorSave\n(debounced)"]
    B --> C["blocksToMarkdownLossy()"]
    C --> D["postProcessWikilinks()\n→ restore [[target]] syntax"]
    D --> E["invoke('save_note_content')"]
    E --> F["💾 Disk write"]
    F --> G["Update tab status indicator"]

Git Sync Flow

flowchart TD
    AS["useAutoSync\n(configurable interval)"] --> PULL["invoke('git_pull')"]
    PULL --> PC{Result?}
    PC -->|Conflicts| CM["ConflictResolverModal"]
    PC -->|Fast-forward| RV["reload vault"]
    PC -->|Up to date| DONE["idle"]

    AS --> PUSH["invoke('git_push')"]

    MAN["Manual commit\n(CommitDialog)"] --> GC["invoke('git_commit', message)"]
    GC --> GP["invoke('git_push')"]
    GP --> RM["Reload modified files"]

Vault Module Structure

The vault backend (src-tauri/src/vault/) is split into focused submodules:

File	Purpose
mod.rs	Core types (VaultEntry, Frontmatter), parse_md_file, scan_vault, relationship/link extraction
parsing.rs	Text processing: snippet extraction, markdown stripping, ISO date parsing, extract_title
cache.rs	Git-based incremental vault caching (scan_vault_cached), git helpers
trash.rs	purge_trash — deletes trashed notes older than 30 days
rename.rs	rename_note — renames files and updates wikilinks across the vault
image.rs	save_image — saves base64-encoded attachments with sanitized filenames
migration.rs	flatten_vault, vault_health_check, migrate_is_a_to_type
config_seed.rs	Seeds config/ folder, migrates AGENTS.md, repairs missing config files
getting_started.rs	Creates the Getting Started demo vault

Rust Backend Modules

Module	Purpose
vault/	Vault scanning, caching, parsing, trash, rename, image, migration
frontmatter/	YAML frontmatter read/write (mod.rs, yaml.rs, ops.rs)
git/	Git operations (commit.rs, status.rs, history.rs, conflict.rs, remote.rs, pulse.rs)
github/	GitHub OAuth + API (auth.rs, api.rs, clone.rs)
theme/	Theme management (mod.rs, create.rs, defaults.rs, seed.rs)
search.rs	qmd search integration (keyword/semantic/hybrid)
indexing.rs	qmd indexing with progress streaming
claude_cli.rs	Claude CLI subprocess spawning + NDJSON stream parsing
ai_chat.rs	Direct Anthropic API client (non-streaming, for Tauri builds)
mcp.rs	MCP server spawning + config registration
commands.rs	All 62 Tauri command handlers
settings.rs	App settings persistence
vault_config.rs	Per-vault UI config
vault_list.rs	Vault list persistence
menu.rs	Native macOS menu bar

Tauri IPC Commands (64 total)

Vault Operations

Command	Description
list_vault	Scan vault (cached) → Vec<VaultEntry>
get_note_content	Read note file content
save_note_content	Write note content to disk
delete_note	Move note to trash
rename_note	Rename note + update cross-vault wikilinks
batch_archive_notes	Archive multiple notes
batch_trash_notes	Trash multiple notes
batch_delete_notes	Permanently delete notes from disk
empty_trash	Permanently delete all trashed notes from disk
purge_trash	Delete notes trashed >30 days ago
reload_vault	Invalidate cache and full rescan from filesystem → Vec<VaultEntry>
reload_vault_entry	Re-read a single file from disk → VaultEntry
check_vault_exists	Check if vault path exists
create_getting_started_vault	Bootstrap demo vault

Frontmatter

Command	Description
update_frontmatter	Update a frontmatter property
delete_frontmatter_property	Remove a frontmatter property

Git

Command	Description
git_commit	Stage all + commit
git_pull	Pull from remote
git_push	Push to remote
git_resolve_conflict	Resolve a merge conflict
git_commit_conflict_resolution	Commit conflict resolution
get_file_history	Last N commits for a file
get_modified_files	git status filtered to .md
get_file_diff	Unified diff for a file
get_file_diff_at_commit	Diff at a specific commit
get_conflict_files	List conflicted files
get_conflict_mode	Get conflict resolution mode
get_vault_pulse	Git activity feed (paginated)
get_last_commit_info	Latest commit metadata

GitHub

Command	Description
github_device_flow_start	Begin OAuth device flow
github_device_flow_poll	Poll for authorization
github_get_user	Get authenticated user info
github_list_repos	List user's repos
github_create_repo	Create new repo
clone_repo	Clone repo with token auth

Search & Indexing

Command	Description
search_vault	Search via qmd (keyword/semantic/hybrid)
get_index_status	Check qmd index state
start_indexing	Full index with progress streaming
trigger_incremental_index	Incremental index update

Theme

Command	Description
list_themes	List all themes (legacy JSON)
get_theme	Read a theme file
get_vault_settings	Read .laputa/settings.json
save_vault_settings	Write vault settings
set_active_theme	Set active theme ID
create_theme	Create JSON theme from template
create_vault_theme	Create markdown theme note
ensure_vault_themes	Seed default themes if missing
restore_default_themes	Restore all default themes
repair_vault	Flatten vault structure, migrate legacy frontmatter, restore themes + config

AI & MCP

Command	Description
ai_chat	Direct Anthropic API call (non-streaming)
stream_claude_chat	Claude CLI chat mode (streaming)
stream_claude_agent	Claude CLI agent mode (streaming + tools)
check_claude_cli	Check if Claude CLI is available
register_mcp_tools	Register MCP in Claude/Cursor config
check_mcp_status	Check MCP registration state

Settings & Config

Command	Description
get_settings	Load app settings
save_settings	Save app settings
load_vault_list	Load vault list
save_vault_list	Save vault list
get_vault_config	Load per-vault UI config
save_vault_config	Save per-vault UI config
get_default_vault_path	Get default vault path
get_build_number	Get app build number
save_image	Save base64 image to vault
copy_image_to_vault	Copy image file to vault
update_menu_state	Update native menu checkmarks

Mock Layer

When running outside Tauri (browser at localhost:5173), src/mock-tauri.ts provides a transparent mock layer:

if (isTauri()) {
  result = await invoke<T>('command_name', { args })
} else {
  result = await mockInvoke<T>('command_name', { args })
}

The mock layer includes sample entries across all entity types, full markdown content with realistic frontmatter, mock git history, mock AI responses, and mock pulse commits.

State Management

No Redux or global context. State lives in the root App.tsx and custom hooks:

State owner	State	Purpose
App.tsx	selection, panel widths, dialog visibility, toast, view mode	UI state
useVaultLoader	entries, allContent, modifiedFiles	Vault data
useNoteActions	tabs, activeTabPath	Composes useNoteCreation + useNoteRename + frontmatterOps
useNoteCreation	— (delegates to useTabManagement)	Note/type/daily-note creation with optimistic persistence
useNoteRename	— (delegates to useTabManagement)	Note renaming with wikilink update
frontmatterOps	— (pure functions)	Frontmatter CRUD: key→VaultEntry mapping, mock/Tauri dispatch
useTabManagement	Tab ordering, pinning, swapping, closed-tab history	Tab lifecycle
useVaultSwitcher	vaultPath, extraVaults	Vault switching
useThemeManager	themes, activeThemeId, isDark	Theme state
useAIChat	messages, isStreaming	AI chat conversation
useAiAgent	messages, status, tool actions	AI agent conversation
useAutoSync	Sync interval, pull/push state	Git auto-sync
useIndexing	Index status, progress	Search indexing
useSettings	App settings (API keys, GitHub token)	Persistent settings
useVaultConfig	Per-vault UI preferences	Vault-specific config

Data flows unidirectionally: App passes data and callbacks as props to child components. No child-to-child communication — everything goes through App.

Keyboard Shortcuts

Shortcut	Action
Cmd+K	Open command palette
Cmd+P	Open quick open palette
Cmd+N	Create new note
Cmd+S	Save current note
Cmd+W	Close active tab
Cmd+Shift+T	Reopen last closed tab (LIFO history, up to 20)
Cmd+Z / Cmd+Shift+Z	Undo / Redo
Cmd+1–9	Switch to tab N
Cmd+[ / Cmd+]	Navigate back / forward
[[ in editor	Open wikilink suggestion menu

Auto-Release & In-App Updates

Release Pipeline

Every push to main triggers .github/workflows/release.yml:

push to main
  → version job: compute 0.YYYYMMDD.RUN_NUMBER
  → build job (matrix: aarch64 + x86_64):
      → pnpm install, stamp version, pnpm build, tauri build --target <arch>
      → upload .app, .tar.gz + .sig, .dmg as artifacts
  → release job:
      → download both arch artifacts
      → lipo aarch64 + x86_64 → universal binary
      → create universal .dmg + signed updater tarball
      → generate latest.json (per-arch + universal platform entries)
      → publish GitHub Release with all assets + auto-generated notes
  → pages job:
      → build static HTML release history page
      → deploy to gh-pages

Versioning

Format: 0.YYYYMMDD.GITHUB_RUN_NUMBER (e.g. 0.20260223.42). Stamped into tauri.conf.json and Cargo.toml dynamically.

In-App Updates

App startup (3s delay)
  → useUpdater.check()
    → idle (no update) → no UI
    → available → UpdateBanner with release notes + "Update Now"
      → downloading → progress bar
        → ready → "Restart to apply" + Restart Now
    → network error → fail silently