Files
tolaria/tools/qmd/src/store.ts
Test bb20ef17f6 fix: bundle qmd source in tools/qmd/ so CI can compile it
bundle-qmd.sh was trying to install qmd via 'bun install -g qmd' which
installs a different public npm package, not Luca's qmd tool. CI runners
(runner user) don't have the local qmd installation.

Fix:
- Copy qmd source (src/, package.json, tsconfig.json, bun.lock) to tools/qmd/
- Update bundle-qmd.sh to prefer tools/qmd/ as QMD_SRC
- Run 'bun install --frozen-lockfile' in QMD_SRC if node_modules missing
- Update sqlite-vec lookup to find packages from node_modules after bun install
- Compilation uses 'cd $QMD_SRC && bun build --compile src/qmd.ts'
- Add tools/ to eslint globalIgnores (qmd source has its own lint standards)
- Local dev machines still work (tools/qmd/ takes priority over global install)
2026-03-06 08:22:20 +01:00

2572 lines
86 KiB
TypeScript

/**
* QMD Store - Core data access and retrieval functions
*
* This module provides all database operations, search functions, and document
* retrieval for QMD. It returns raw data structures that can be formatted by
* CLI or MCP consumers.
*
* Usage:
* const store = createStore("/path/to/db.sqlite");
* // or use default path:
* const store = createStore();
*/
import { Database } from "bun:sqlite";
import { Glob } from "bun";
import { realpathSync, statSync } from "node:fs";
import * as sqliteVec from "sqlite-vec";
import {
LlamaCpp,
getDefaultLlamaCpp,
formatQueryForEmbedding,
formatDocForEmbedding,
type RerankDocument,
type ILLMSession,
} from "./llm";
import {
findContextForPath as collectionsFindContextForPath,
addContext as collectionsAddContext,
removeContext as collectionsRemoveContext,
listAllContexts as collectionsListAllContexts,
getCollection,
listCollections as collectionsListCollections,
addCollection as collectionsAddCollection,
removeCollection as collectionsRemoveCollection,
renameCollection as collectionsRenameCollection,
setGlobalContext,
loadConfig as collectionsLoadConfig,
type NamedCollection,
} from "./collections";
// =============================================================================
// Configuration
// =============================================================================
const HOME = Bun.env.HOME || "/tmp";
export const DEFAULT_EMBED_MODEL = "embeddinggemma";
export const DEFAULT_RERANK_MODEL = "ExpedientFalcon/qwen3-reranker:0.6b-q8_0";
export const DEFAULT_QUERY_MODEL = "Qwen/Qwen3-1.7B";
export const DEFAULT_GLOB = "**/*.md";
export const DEFAULT_MULTI_GET_MAX_BYTES = 10 * 1024; // 10KB
// Chunking: 800 tokens per chunk with 15% overlap
export const CHUNK_SIZE_TOKENS = 800;
export const CHUNK_OVERLAP_TOKENS = Math.floor(CHUNK_SIZE_TOKENS * 0.15); // 120 tokens (15% overlap)
// Fallback char-based approximation for sync chunking (~4 chars per token)
export const CHUNK_SIZE_CHARS = CHUNK_SIZE_TOKENS * 4; // 3200 chars
export const CHUNK_OVERLAP_CHARS = CHUNK_OVERLAP_TOKENS * 4; // 480 chars
// =============================================================================
// Path utilities
// =============================================================================
export function homedir(): string {
return HOME;
}
/**
* Check if a path is absolute.
* Supports:
* - Unix paths: /path/to/file
* - Windows native: C:\path or C:/path
* - Git Bash: /c/path or /C/path (C-Z drives, excluding A/B floppy drives)
*
* Note: /c without trailing slash is treated as Unix path (directory named "c"),
* while /c/ or /c/path are treated as Git Bash paths (C: drive).
*/
export function isAbsolutePath(path: string): boolean {
if (!path) return false;
// Unix absolute path
if (path.startsWith('/')) {
// Check if it's a Git Bash style path like /c/ or /c/Users (C-Z only, not A or B)
// Requires path[2] === '/' to distinguish from Unix paths like /c or /cache
if (path.length >= 3 && path[2] === '/') {
const driveLetter = path[1];
if (driveLetter && /[c-zC-Z]/.test(driveLetter)) {
return true;
}
}
// Any other path starting with / is Unix absolute
return true;
}
// Windows native path: C:\ or C:/ (any letter A-Z)
if (path.length >= 2 && /[a-zA-Z]/.test(path[0]!) && path[1] === ':') {
return true;
}
return false;
}
/**
* Normalize path separators to forward slashes.
* Converts Windows backslashes to forward slashes.
*/
export function normalizePathSeparators(path: string): string {
return path.replace(/\\/g, '/');
}
/**
* Get the relative path from a prefix.
* Returns null if path is not under prefix.
* Returns empty string if path equals prefix.
*/
export function getRelativePathFromPrefix(path: string, prefix: string): string | null {
// Empty prefix is invalid
if (!prefix) {
return null;
}
const normalizedPath = normalizePathSeparators(path);
const normalizedPrefix = normalizePathSeparators(prefix);
// Ensure prefix ends with / for proper matching
const prefixWithSlash = !normalizedPrefix.endsWith('/')
? normalizedPrefix + '/'
: normalizedPrefix;
// Exact match
if (normalizedPath === normalizedPrefix) {
return '';
}
// Check if path starts with prefix
if (normalizedPath.startsWith(prefixWithSlash)) {
return normalizedPath.slice(prefixWithSlash.length);
}
return null;
}
export function resolve(...paths: string[]): string {
if (paths.length === 0) {
throw new Error("resolve: at least one path segment is required");
}
// Normalize all paths to use forward slashes
const normalizedPaths = paths.map(normalizePathSeparators);
let result = '';
let windowsDrive = '';
// Check if first path is absolute
const firstPath = normalizedPaths[0]!;
if (isAbsolutePath(firstPath)) {
result = firstPath;
// Extract Windows drive letter if present
if (firstPath.length >= 2 && /[a-zA-Z]/.test(firstPath[0]!) && firstPath[1] === ':') {
windowsDrive = firstPath.slice(0, 2);
result = firstPath.slice(2);
} else if (firstPath.startsWith('/') && firstPath.length >= 3 && firstPath[2] === '/') {
// Git Bash style: /c/ -> C: (C-Z drives only, not A or B)
const driveLetter = firstPath[1];
if (driveLetter && /[c-zC-Z]/.test(driveLetter)) {
windowsDrive = driveLetter.toUpperCase() + ':';
result = firstPath.slice(2);
}
}
} else {
// Start with PWD or cwd, then append the first relative path
const pwd = normalizePathSeparators(Bun.env.PWD || process.cwd());
// Extract Windows drive from PWD if present
if (pwd.length >= 2 && /[a-zA-Z]/.test(pwd[0]!) && pwd[1] === ':') {
windowsDrive = pwd.slice(0, 2);
result = pwd.slice(2) + '/' + firstPath;
} else {
result = pwd + '/' + firstPath;
}
}
// Process remaining paths
for (let i = 1; i < normalizedPaths.length; i++) {
const p = normalizedPaths[i]!;
if (isAbsolutePath(p)) {
// Absolute path replaces everything
result = p;
// Update Windows drive if present
if (p.length >= 2 && /[a-zA-Z]/.test(p[0]!) && p[1] === ':') {
windowsDrive = p.slice(0, 2);
result = p.slice(2);
} else if (p.startsWith('/') && p.length >= 3 && p[2] === '/') {
// Git Bash style (C-Z drives only, not A or B)
const driveLetter = p[1];
if (driveLetter && /[c-zC-Z]/.test(driveLetter)) {
windowsDrive = driveLetter.toUpperCase() + ':';
result = p.slice(2);
} else {
windowsDrive = '';
}
} else {
windowsDrive = '';
}
} else {
// Relative path - append
result = result + '/' + p;
}
}
// Normalize . and .. components
const parts = result.split('/').filter(Boolean);
const normalized: string[] = [];
for (const part of parts) {
if (part === '..') {
normalized.pop();
} else if (part !== '.') {
normalized.push(part);
}
}
// Build final path
const finalPath = '/' + normalized.join('/');
// Prepend Windows drive if present
if (windowsDrive) {
return windowsDrive + finalPath;
}
return finalPath;
}
// Flag to indicate production mode (set by qmd.ts at startup)
let _productionMode = false;
export function enableProductionMode(): void {
_productionMode = true;
}
export function getDefaultDbPath(indexName: string = "index"): string {
// Always allow override via INDEX_PATH (for testing)
if (Bun.env.INDEX_PATH) {
return Bun.env.INDEX_PATH;
}
// In non-production mode (tests), require explicit path
if (!_productionMode) {
throw new Error(
"Database path not set. Tests must set INDEX_PATH env var or use createStore() with explicit path. " +
"This prevents tests from accidentally writing to the global index."
);
}
const cacheDir = Bun.env.XDG_CACHE_HOME || resolve(homedir(), ".cache");
const qmdCacheDir = resolve(cacheDir, "qmd");
try { Bun.spawnSync(["mkdir", "-p", qmdCacheDir]); } catch { }
return resolve(qmdCacheDir, `${indexName}.sqlite`);
}
export function getPwd(): string {
return process.env.PWD || process.cwd();
}
export function getRealPath(path: string): string {
try {
return realpathSync(path);
} catch {
return resolve(path);
}
}
// =============================================================================
// Virtual Path Utilities (qmd://)
// =============================================================================
export type VirtualPath = {
collectionName: string;
path: string; // relative path within collection
};
/**
* Normalize explicit virtual path formats to standard qmd:// format.
* Only handles paths that are already explicitly virtual:
* - qmd://collection/path.md (already normalized)
* - qmd:////collection/path.md (extra slashes - normalize)
* - //collection/path.md (missing qmd: prefix - add it)
*
* Does NOT handle:
* - collection/path.md (bare paths - could be filesystem relative)
* - :linenum suffix (should be parsed separately before calling this)
*/
export function normalizeVirtualPath(input: string): string {
let path = input.trim();
// Handle qmd:// with extra slashes: qmd:////collection/path -> qmd://collection/path
if (path.startsWith('qmd:')) {
// Remove qmd: prefix and normalize slashes
path = path.slice(4);
// Remove leading slashes and re-add exactly two
path = path.replace(/^\/+/, '');
return `qmd://${path}`;
}
// Handle //collection/path (missing qmd: prefix)
if (path.startsWith('//')) {
path = path.replace(/^\/+/, '');
return `qmd://${path}`;
}
// Return as-is for other cases (filesystem paths, docids, bare collection/path, etc.)
return path;
}
/**
* Parse a virtual path like "qmd://collection-name/path/to/file.md"
* into its components.
* Also supports collection root: "qmd://collection-name/" or "qmd://collection-name"
*/
export function parseVirtualPath(virtualPath: string): VirtualPath | null {
// Normalize the path first
const normalized = normalizeVirtualPath(virtualPath);
// Match: qmd://collection-name[/optional-path]
// Allows: qmd://name, qmd://name/, qmd://name/path
const match = normalized.match(/^qmd:\/\/([^\/]+)\/?(.*)$/);
if (!match?.[1]) return null;
return {
collectionName: match[1],
path: match[2] ?? '', // Empty string for collection root
};
}
/**
* Build a virtual path from collection name and relative path.
*/
export function buildVirtualPath(collectionName: string, path: string): string {
return `qmd://${collectionName}/${path}`;
}
/**
* Check if a path is explicitly a virtual path.
* Only recognizes explicit virtual path formats:
* - qmd://collection/path.md
* - //collection/path.md
*
* Does NOT consider bare collection/path.md as virtual - that should be
* handled separately by checking if the first component is a collection name.
*/
export function isVirtualPath(path: string): boolean {
const trimmed = path.trim();
// Explicit qmd:// prefix (with any number of slashes)
if (trimmed.startsWith('qmd:')) return true;
// //collection/path format (missing qmd: prefix)
if (trimmed.startsWith('//')) return true;
return false;
}
/**
* Resolve a virtual path to absolute filesystem path.
*/
export function resolveVirtualPath(db: Database, virtualPath: string): string | null {
const parsed = parseVirtualPath(virtualPath);
if (!parsed) return null;
const coll = getCollectionByName(db, parsed.collectionName);
if (!coll) return null;
return resolve(coll.pwd, parsed.path);
}
/**
* Convert an absolute filesystem path to a virtual path.
* Returns null if the file is not in any indexed collection.
*/
export function toVirtualPath(db: Database, absolutePath: string): string | null {
// Get all collections from YAML config
const collections = collectionsListCollections();
// Find which collection this absolute path belongs to
for (const coll of collections) {
if (absolutePath.startsWith(coll.path + '/') || absolutePath === coll.path) {
// Extract relative path
const relativePath = absolutePath.startsWith(coll.path + '/')
? absolutePath.slice(coll.path.length + 1)
: '';
// Verify this document exists in the database
const doc = db.prepare(`
SELECT d.path
FROM documents d
WHERE d.collection = ? AND d.path = ? AND d.active = 1
LIMIT 1
`).get(coll.name, relativePath) as { path: string } | null;
if (doc) {
return buildVirtualPath(coll.name, relativePath);
}
}
}
return null;
}
// =============================================================================
// Database initialization
// =============================================================================
function setSQLiteFromBrewPrefixEnv(): void {
const candidates: string[] = [];
if (process.platform === "darwin") {
// Use BREW_PREFIX for non-standard Homebrew installs (common on corporate Macs).
const brewPrefix = Bun.env.BREW_PREFIX || Bun.env.HOMEBREW_PREFIX;
if (brewPrefix) {
// Homebrew can place SQLite in opt/sqlite (keg-only) or directly under the prefix.
candidates.push(`${brewPrefix}/opt/sqlite/lib/libsqlite3.dylib`);
candidates.push(`${brewPrefix}/lib/libsqlite3.dylib`);
} else {
candidates.push("/opt/homebrew/opt/sqlite/lib/libsqlite3.dylib");
candidates.push("/usr/local/opt/sqlite/lib/libsqlite3.dylib");
}
}
for (const candidate of candidates) {
try {
if (statSync(candidate).size > 0) {
Database.setCustomSQLite(candidate);
return;
}
} catch { }
}
}
setSQLiteFromBrewPrefixEnv();
function initializeDatabase(db: Database): void {
try {
sqliteVec.load(db);
} catch (err) {
if (err instanceof Error && err.message.includes("does not support dynamic extension loading")) {
throw new Error(
"SQLite build does not support dynamic extension loading. " +
"Install Homebrew SQLite so the sqlite-vec extension can be loaded, " +
"and set BREW_PREFIX if Homebrew is installed in a non-standard location."
);
}
throw err;
}
db.exec("PRAGMA journal_mode = WAL");
db.exec("PRAGMA foreign_keys = ON");
// Drop legacy tables that are now managed in YAML
db.exec(`DROP TABLE IF EXISTS path_contexts`);
db.exec(`DROP TABLE IF EXISTS collections`);
// Content-addressable storage - the source of truth for document content
db.exec(`
CREATE TABLE IF NOT EXISTS content (
hash TEXT PRIMARY KEY,
doc TEXT NOT NULL,
created_at TEXT NOT NULL
)
`);
// Documents table - file system layer mapping virtual paths to content hashes
// Collections are now managed in ~/.config/qmd/index.yml
db.exec(`
CREATE TABLE IF NOT EXISTS documents (
id INTEGER PRIMARY KEY AUTOINCREMENT,
collection TEXT NOT NULL,
path TEXT NOT NULL,
title TEXT NOT NULL,
hash TEXT NOT NULL,
created_at TEXT NOT NULL,
modified_at TEXT NOT NULL,
active INTEGER NOT NULL DEFAULT 1,
FOREIGN KEY (hash) REFERENCES content(hash) ON DELETE CASCADE,
UNIQUE(collection, path)
)
`);
db.exec(`CREATE INDEX IF NOT EXISTS idx_documents_collection ON documents(collection, active)`);
db.exec(`CREATE INDEX IF NOT EXISTS idx_documents_hash ON documents(hash)`);
db.exec(`CREATE INDEX IF NOT EXISTS idx_documents_path ON documents(path, active)`);
// Cache table for LLM API calls
db.exec(`
CREATE TABLE IF NOT EXISTS llm_cache (
hash TEXT PRIMARY KEY,
result TEXT NOT NULL,
created_at TEXT NOT NULL
)
`);
// Content vectors
const cvInfo = db.prepare(`PRAGMA table_info(content_vectors)`).all() as { name: string }[];
const hasSeqColumn = cvInfo.some(col => col.name === 'seq');
if (cvInfo.length > 0 && !hasSeqColumn) {
db.exec(`DROP TABLE IF EXISTS content_vectors`);
db.exec(`DROP TABLE IF EXISTS vectors_vec`);
}
db.exec(`
CREATE TABLE IF NOT EXISTS content_vectors (
hash TEXT NOT NULL,
seq INTEGER NOT NULL DEFAULT 0,
pos INTEGER NOT NULL DEFAULT 0,
model TEXT NOT NULL,
embedded_at TEXT NOT NULL,
PRIMARY KEY (hash, seq)
)
`);
// FTS - index filepath (collection/path), title, and content
db.exec(`
CREATE VIRTUAL TABLE IF NOT EXISTS documents_fts USING fts5(
filepath, title, body,
tokenize='porter unicode61'
)
`);
// Triggers to keep FTS in sync
db.exec(`
CREATE TRIGGER IF NOT EXISTS documents_ai AFTER INSERT ON documents
WHEN new.active = 1
BEGIN
INSERT INTO documents_fts(rowid, filepath, title, body)
SELECT
new.id,
new.collection || '/' || new.path,
new.title,
(SELECT doc FROM content WHERE hash = new.hash)
WHERE new.active = 1;
END
`);
db.exec(`
CREATE TRIGGER IF NOT EXISTS documents_ad AFTER DELETE ON documents BEGIN
DELETE FROM documents_fts WHERE rowid = old.id;
END
`);
db.exec(`
CREATE TRIGGER IF NOT EXISTS documents_au AFTER UPDATE ON documents
BEGIN
-- Delete from FTS if no longer active
DELETE FROM documents_fts WHERE rowid = old.id AND new.active = 0;
-- Update FTS if still/newly active
INSERT OR REPLACE INTO documents_fts(rowid, filepath, title, body)
SELECT
new.id,
new.collection || '/' || new.path,
new.title,
(SELECT doc FROM content WHERE hash = new.hash)
WHERE new.active = 1;
END
`);
}
function ensureVecTableInternal(db: Database, dimensions: number): void {
const tableInfo = db.prepare(`SELECT sql FROM sqlite_master WHERE type='table' AND name='vectors_vec'`).get() as { sql: string } | null;
if (tableInfo) {
const match = tableInfo.sql.match(/float\[(\d+)\]/);
const hasHashSeq = tableInfo.sql.includes('hash_seq');
const hasCosine = tableInfo.sql.includes('distance_metric=cosine');
const existingDims = match?.[1] ? parseInt(match[1], 10) : null;
if (existingDims === dimensions && hasHashSeq && hasCosine) return;
// Table exists but wrong schema - need to rebuild
db.exec("DROP TABLE IF EXISTS vectors_vec");
}
db.exec(`CREATE VIRTUAL TABLE vectors_vec USING vec0(hash_seq TEXT PRIMARY KEY, embedding float[${dimensions}] distance_metric=cosine)`);
}
// =============================================================================
// Store Factory
// =============================================================================
export type Store = {
db: Database;
dbPath: string;
close: () => void;
ensureVecTable: (dimensions: number) => void;
// Index health
getHashesNeedingEmbedding: () => number;
getIndexHealth: () => IndexHealthInfo;
getStatus: () => IndexStatus;
// Caching
getCacheKey: typeof getCacheKey;
getCachedResult: (cacheKey: string) => string | null;
setCachedResult: (cacheKey: string, result: string) => void;
clearCache: () => void;
// Cleanup and maintenance
deleteLLMCache: () => number;
deleteInactiveDocuments: () => number;
cleanupOrphanedContent: () => number;
cleanupOrphanedVectors: () => number;
vacuumDatabase: () => void;
// Context
getContextForFile: (filepath: string) => string | null;
getContextForPath: (collectionName: string, path: string) => string | null;
getCollectionByName: (name: string) => { name: string; pwd: string; glob_pattern: string } | null;
getCollectionsWithoutContext: () => { name: string; pwd: string; doc_count: number }[];
getTopLevelPathsWithoutContext: (collectionName: string) => string[];
// Virtual paths
parseVirtualPath: typeof parseVirtualPath;
buildVirtualPath: typeof buildVirtualPath;
isVirtualPath: typeof isVirtualPath;
resolveVirtualPath: (virtualPath: string) => string | null;
toVirtualPath: (absolutePath: string) => string | null;
// Search
searchFTS: (query: string, limit?: number, collectionId?: number) => SearchResult[];
searchVec: (query: string, model: string, limit?: number, collectionName?: string) => Promise<SearchResult[]>;
// Query expansion & reranking
expandQuery: (query: string, model?: string) => Promise<string[]>;
rerank: (query: string, documents: { file: string; text: string }[], model?: string) => Promise<{ file: string; score: number }[]>;
// Document retrieval
findDocument: (filename: string, options?: { includeBody?: boolean }) => DocumentResult | DocumentNotFound;
getDocumentBody: (doc: DocumentResult | { filepath: string }, fromLine?: number, maxLines?: number) => string | null;
findDocuments: (pattern: string, options?: { includeBody?: boolean; maxBytes?: number }) => { docs: MultiGetResult[]; errors: string[] };
// Fuzzy matching and docid lookup
findSimilarFiles: (query: string, maxDistance?: number, limit?: number) => string[];
matchFilesByGlob: (pattern: string) => { filepath: string; displayPath: string; bodyLength: number }[];
findDocumentByDocid: (docid: string) => { filepath: string; hash: string } | null;
// Document indexing operations
insertContent: (hash: string, content: string, createdAt: string) => void;
insertDocument: (collectionName: string, path: string, title: string, hash: string, createdAt: string, modifiedAt: string) => void;
findActiveDocument: (collectionName: string, path: string) => { id: number; hash: string; title: string } | null;
updateDocumentTitle: (documentId: number, title: string, modifiedAt: string) => void;
updateDocument: (documentId: number, title: string, hash: string, modifiedAt: string) => void;
deactivateDocument: (collectionName: string, path: string) => void;
getActiveDocumentPaths: (collectionName: string) => string[];
// Vector/embedding operations
getHashesForEmbedding: () => { hash: string; body: string; path: string }[];
clearAllEmbeddings: () => void;
insertEmbedding: (hash: string, seq: number, pos: number, embedding: Float32Array, model: string, embeddedAt: string) => void;
};
/**
* Create a new store instance with the given database path.
* If no path is provided, uses the default path (~/.cache/qmd/index.sqlite).
*
* @param dbPath - Path to the SQLite database file
* @returns Store instance with all methods bound to the database
*/
export function createStore(dbPath?: string): Store {
const resolvedPath = dbPath || getDefaultDbPath();
const db = new Database(resolvedPath);
initializeDatabase(db);
return {
db,
dbPath: resolvedPath,
close: () => db.close(),
ensureVecTable: (dimensions: number) => ensureVecTableInternal(db, dimensions),
// Index health
getHashesNeedingEmbedding: () => getHashesNeedingEmbedding(db),
getIndexHealth: () => getIndexHealth(db),
getStatus: () => getStatus(db),
// Caching
getCacheKey,
getCachedResult: (cacheKey: string) => getCachedResult(db, cacheKey),
setCachedResult: (cacheKey: string, result: string) => setCachedResult(db, cacheKey, result),
clearCache: () => clearCache(db),
// Cleanup and maintenance
deleteLLMCache: () => deleteLLMCache(db),
deleteInactiveDocuments: () => deleteInactiveDocuments(db),
cleanupOrphanedContent: () => cleanupOrphanedContent(db),
cleanupOrphanedVectors: () => cleanupOrphanedVectors(db),
vacuumDatabase: () => vacuumDatabase(db),
// Context
getContextForFile: (filepath: string) => getContextForFile(db, filepath),
getContextForPath: (collectionName: string, path: string) => getContextForPath(db, collectionName, path),
getCollectionByName: (name: string) => getCollectionByName(db, name),
getCollectionsWithoutContext: () => getCollectionsWithoutContext(db),
getTopLevelPathsWithoutContext: (collectionName: string) => getTopLevelPathsWithoutContext(db, collectionName),
// Virtual paths
parseVirtualPath,
buildVirtualPath,
isVirtualPath,
resolveVirtualPath: (virtualPath: string) => resolveVirtualPath(db, virtualPath),
toVirtualPath: (absolutePath: string) => toVirtualPath(db, absolutePath),
// Search
searchFTS: (query: string, limit?: number, collectionId?: number) => searchFTS(db, query, limit, collectionId),
searchVec: (query: string, model: string, limit?: number, collectionName?: string) => searchVec(db, query, model, limit, collectionName),
// Query expansion & reranking
expandQuery: (query: string, model?: string) => expandQuery(query, model, db),
rerank: (query: string, documents: { file: string; text: string }[], model?: string) => rerank(query, documents, model, db),
// Document retrieval
findDocument: (filename: string, options?: { includeBody?: boolean }) => findDocument(db, filename, options),
getDocumentBody: (doc: DocumentResult | { filepath: string }, fromLine?: number, maxLines?: number) => getDocumentBody(db, doc, fromLine, maxLines),
findDocuments: (pattern: string, options?: { includeBody?: boolean; maxBytes?: number }) => findDocuments(db, pattern, options),
// Fuzzy matching and docid lookup
findSimilarFiles: (query: string, maxDistance?: number, limit?: number) => findSimilarFiles(db, query, maxDistance, limit),
matchFilesByGlob: (pattern: string) => matchFilesByGlob(db, pattern),
findDocumentByDocid: (docid: string) => findDocumentByDocid(db, docid),
// Document indexing operations
insertContent: (hash: string, content: string, createdAt: string) => insertContent(db, hash, content, createdAt),
insertDocument: (collectionName: string, path: string, title: string, hash: string, createdAt: string, modifiedAt: string) => insertDocument(db, collectionName, path, title, hash, createdAt, modifiedAt),
findActiveDocument: (collectionName: string, path: string) => findActiveDocument(db, collectionName, path),
updateDocumentTitle: (documentId: number, title: string, modifiedAt: string) => updateDocumentTitle(db, documentId, title, modifiedAt),
updateDocument: (documentId: number, title: string, hash: string, modifiedAt: string) => updateDocument(db, documentId, title, hash, modifiedAt),
deactivateDocument: (collectionName: string, path: string) => deactivateDocument(db, collectionName, path),
getActiveDocumentPaths: (collectionName: string) => getActiveDocumentPaths(db, collectionName),
// Vector/embedding operations
getHashesForEmbedding: () => getHashesForEmbedding(db),
clearAllEmbeddings: () => clearAllEmbeddings(db),
insertEmbedding: (hash: string, seq: number, pos: number, embedding: Float32Array, model: string, embeddedAt: string) => insertEmbedding(db, hash, seq, pos, embedding, model, embeddedAt),
};
}
// =============================================================================
// Core Document Type
// =============================================================================
/**
* Unified document result type with all metadata.
* Body is optional - use getDocumentBody() to load it separately if needed.
*/
export type DocumentResult = {
filepath: string; // Full filesystem path
displayPath: string; // Short display path (e.g., "docs/readme.md")
title: string; // Document title (from first heading or filename)
context: string | null; // Folder context description if configured
hash: string; // Content hash for caching/change detection
docid: string; // Short docid (first 6 chars of hash) for quick reference
collectionName: string; // Parent collection name
modifiedAt: string; // Last modification timestamp
bodyLength: number; // Body length in bytes (useful before loading)
body?: string; // Document body (optional, load with getDocumentBody)
};
/**
* Extract short docid from a full hash (first 6 characters).
*/
export function getDocid(hash: string): string {
return hash.slice(0, 6);
}
/**
* Handelize a filename to be more token-friendly.
* - Convert triple underscore `___` to `/` (folder separator)
* - Convert to lowercase
* - Replace sequences of non-word chars (except /) with single dash
* - Remove leading/trailing dashes from path segments
* - Preserve folder structure (a/b/c/d.md stays structured)
* - Preserve file extension
*/
export function handelize(path: string): string {
if (!path || path.trim() === '') {
throw new Error('handelize: path cannot be empty');
}
// Check for paths that are just extensions or only dots/special chars
// A valid path must have at least one letter or digit (including Unicode)
const segments = path.split('/').filter(Boolean);
const lastSegment = segments[segments.length - 1] || '';
const filenameWithoutExt = lastSegment.replace(/\.[^.]+$/, '');
const hasValidContent = /[\p{L}\p{N}]/u.test(filenameWithoutExt);
if (!hasValidContent) {
throw new Error(`handelize: path "${path}" has no valid filename content`);
}
const result = path
.replace(/___/g, '/') // Triple underscore becomes folder separator
.toLowerCase()
.split('/')
.map((segment, idx, arr) => {
const isLastSegment = idx === arr.length - 1;
if (isLastSegment) {
// For the filename (last segment), preserve the extension
const extMatch = segment.match(/(\.[a-z0-9]+)$/i);
const ext = extMatch ? extMatch[1] : '';
const nameWithoutExt = ext ? segment.slice(0, -ext.length) : segment;
const cleanedName = nameWithoutExt
.replace(/[^\p{L}\p{N}]+/gu, '-') // Replace non-letter/digit chars with dash
.replace(/^-+|-+$/g, ''); // Remove leading/trailing dashes
return cleanedName + ext;
} else {
// For directories, just clean normally
return segment
.replace(/[^\p{L}\p{N}]+/gu, '-')
.replace(/^-+|-+$/g, '');
}
})
.filter(Boolean)
.join('/');
if (!result) {
throw new Error(`handelize: path "${path}" resulted in empty string after processing`);
}
return result;
}
/**
* Search result extends DocumentResult with score and source info
*/
export type SearchResult = DocumentResult & {
score: number; // Relevance score (0-1)
source: "fts" | "vec"; // Search source (full-text or vector)
chunkPos?: number; // Character position of matching chunk (for vector search)
};
/**
* Ranked result for RRF fusion (simplified, used internally)
*/
export type RankedResult = {
file: string;
displayPath: string;
title: string;
body: string;
score: number;
};
/**
* Error result when document is not found
*/
export type DocumentNotFound = {
error: "not_found";
query: string;
similarFiles: string[];
};
/**
* Result from multi-get operations
*/
export type MultiGetResult = {
doc: DocumentResult;
skipped: false;
} | {
doc: Pick<DocumentResult, "filepath" | "displayPath">;
skipped: true;
skipReason: string;
};
export type CollectionInfo = {
name: string;
path: string;
pattern: string;
documents: number;
lastUpdated: string;
};
export type IndexStatus = {
totalDocuments: number;
needsEmbedding: number;
hasVectorIndex: boolean;
collections: CollectionInfo[];
};
// =============================================================================
// Index health
// =============================================================================
export function getHashesNeedingEmbedding(db: Database): number {
const result = db.prepare(`
SELECT COUNT(DISTINCT d.hash) as count
FROM documents d
LEFT JOIN content_vectors v ON d.hash = v.hash AND v.seq = 0
WHERE d.active = 1 AND v.hash IS NULL
`).get() as { count: number };
return result.count;
}
export type IndexHealthInfo = {
needsEmbedding: number;
totalDocs: number;
daysStale: number | null;
};
export function getIndexHealth(db: Database): IndexHealthInfo {
const needsEmbedding = getHashesNeedingEmbedding(db);
const totalDocs = (db.prepare(`SELECT COUNT(*) as count FROM documents WHERE active = 1`).get() as { count: number }).count;
const mostRecent = db.prepare(`SELECT MAX(modified_at) as latest FROM documents WHERE active = 1`).get() as { latest: string | null };
let daysStale: number | null = null;
if (mostRecent?.latest) {
const lastUpdate = new Date(mostRecent.latest);
daysStale = Math.floor((Date.now() - lastUpdate.getTime()) / (24 * 60 * 60 * 1000));
}
return { needsEmbedding, totalDocs, daysStale };
}
// =============================================================================
// Caching
// =============================================================================
export function getCacheKey(url: string, body: object): string {
const hash = new Bun.CryptoHasher("sha256");
hash.update(url);
hash.update(JSON.stringify(body));
return hash.digest("hex");
}
export function getCachedResult(db: Database, cacheKey: string): string | null {
const row = db.prepare(`SELECT result FROM llm_cache WHERE hash = ?`).get(cacheKey) as { result: string } | null;
return row?.result || null;
}
export function setCachedResult(db: Database, cacheKey: string, result: string): void {
const now = new Date().toISOString();
db.prepare(`INSERT OR REPLACE INTO llm_cache (hash, result, created_at) VALUES (?, ?, ?)`).run(cacheKey, result, now);
if (Math.random() < 0.01) {
db.exec(`DELETE FROM llm_cache WHERE hash NOT IN (SELECT hash FROM llm_cache ORDER BY created_at DESC LIMIT 1000)`);
}
}
export function clearCache(db: Database): void {
db.exec(`DELETE FROM llm_cache`);
}
// =============================================================================
// Cleanup and maintenance operations
// =============================================================================
/**
* Delete cached LLM API responses.
* Returns the number of cached responses deleted.
*/
export function deleteLLMCache(db: Database): number {
const result = db.prepare(`DELETE FROM llm_cache`).run();
return result.changes;
}
/**
* Remove inactive document records (active = 0).
* Returns the number of inactive documents deleted.
*/
export function deleteInactiveDocuments(db: Database): number {
const result = db.prepare(`DELETE FROM documents WHERE active = 0`).run();
return result.changes;
}
/**
* Remove orphaned content hashes that are not referenced by any active document.
* Returns the number of orphaned content hashes deleted.
*/
export function cleanupOrphanedContent(db: Database): number {
const result = db.prepare(`
DELETE FROM content
WHERE hash NOT IN (SELECT DISTINCT hash FROM documents WHERE active = 1)
`).run();
return result.changes;
}
/**
* Remove orphaned vector embeddings that are not referenced by any active document.
* Returns the number of orphaned embedding chunks deleted.
*/
export function cleanupOrphanedVectors(db: Database): number {
// Check if vectors_vec table exists
const tableExists = db.prepare(`
SELECT name FROM sqlite_master WHERE type='table' AND name='vectors_vec'
`).get();
if (!tableExists) {
return 0;
}
// Count orphaned vectors first
const countResult = db.prepare(`
SELECT COUNT(*) as c FROM content_vectors cv
WHERE NOT EXISTS (
SELECT 1 FROM documents d WHERE d.hash = cv.hash AND d.active = 1
)
`).get() as { c: number };
if (countResult.c === 0) {
return 0;
}
// Delete from vectors_vec first
db.exec(`
DELETE FROM vectors_vec WHERE hash_seq IN (
SELECT cv.hash || '_' || cv.seq FROM content_vectors cv
WHERE NOT EXISTS (
SELECT 1 FROM documents d WHERE d.hash = cv.hash AND d.active = 1
)
)
`);
// Delete from content_vectors
db.exec(`
DELETE FROM content_vectors WHERE hash NOT IN (
SELECT hash FROM documents WHERE active = 1
)
`);
return countResult.c;
}
/**
* Run VACUUM to reclaim unused space in the database.
* This operation rebuilds the database file to eliminate fragmentation.
*/
export function vacuumDatabase(db: Database): void {
db.exec(`VACUUM`);
}
// =============================================================================
// Document helpers
// =============================================================================
export async function hashContent(content: string): Promise<string> {
const hash = new Bun.CryptoHasher("sha256");
hash.update(content);
return hash.digest("hex");
}
const titleExtractors: Record<string, (content: string) => string | null> = {
'.md': (content) => {
const match = content.match(/^##?\s+(.+)$/m);
if (match) {
const title = (match[1] ?? "").trim();
if (title === "📝 Notes" || title === "Notes") {
const nextMatch = content.match(/^##\s+(.+)$/m);
if (nextMatch?.[1]) return nextMatch[1].trim();
}
return title;
}
return null;
},
'.org': (content) => {
const titleProp = content.match(/^#\+TITLE:\s*(.+)$/im);
if (titleProp?.[1]) return titleProp[1].trim();
const heading = content.match(/^\*+\s+(.+)$/m);
if (heading?.[1]) return heading[1].trim();
return null;
},
};
export function extractTitle(content: string, filename: string): string {
const ext = filename.slice(filename.lastIndexOf('.')).toLowerCase();
const extractor = titleExtractors[ext];
if (extractor) {
const title = extractor(content);
if (title) return title;
}
return filename.replace(/\.[^.]+$/, "").split("/").pop() || filename;
}
// =============================================================================
// Document indexing operations
// =============================================================================
/**
* Insert content into the content table (content-addressable storage).
* Uses INSERT OR IGNORE so duplicate hashes are skipped.
*/
export function insertContent(db: Database, hash: string, content: string, createdAt: string): void {
db.prepare(`INSERT OR IGNORE INTO content (hash, doc, created_at) VALUES (?, ?, ?)`)
.run(hash, content, createdAt);
}
/**
* Insert a new document into the documents table.
*/
export function insertDocument(
db: Database,
collectionName: string,
path: string,
title: string,
hash: string,
createdAt: string,
modifiedAt: string
): void {
db.prepare(`
INSERT INTO documents (collection, path, title, hash, created_at, modified_at, active)
VALUES (?, ?, ?, ?, ?, ?, 1)
`).run(collectionName, path, title, hash, createdAt, modifiedAt);
}
/**
* Find an active document by collection name and path.
*/
export function findActiveDocument(
db: Database,
collectionName: string,
path: string
): { id: number; hash: string; title: string } | null {
return db.prepare(`
SELECT id, hash, title FROM documents
WHERE collection = ? AND path = ? AND active = 1
`).get(collectionName, path) as { id: number; hash: string; title: string } | null;
}
/**
* Update the title and modified_at timestamp for a document.
*/
export function updateDocumentTitle(
db: Database,
documentId: number,
title: string,
modifiedAt: string
): void {
db.prepare(`UPDATE documents SET title = ?, modified_at = ? WHERE id = ?`)
.run(title, modifiedAt, documentId);
}
/**
* Update an existing document's hash, title, and modified_at timestamp.
* Used when content changes but the file path stays the same.
*/
export function updateDocument(
db: Database,
documentId: number,
title: string,
hash: string,
modifiedAt: string
): void {
db.prepare(`UPDATE documents SET title = ?, hash = ?, modified_at = ? WHERE id = ?`)
.run(title, hash, modifiedAt, documentId);
}
/**
* Deactivate a document (mark as inactive but don't delete).
*/
export function deactivateDocument(db: Database, collectionName: string, path: string): void {
db.prepare(`UPDATE documents SET active = 0 WHERE collection = ? AND path = ? AND active = 1`)
.run(collectionName, path);
}
/**
* Get all active document paths for a collection.
*/
export function getActiveDocumentPaths(db: Database, collectionName: string): string[] {
const rows = db.prepare(`
SELECT path FROM documents WHERE collection = ? AND active = 1
`).all(collectionName) as { path: string }[];
return rows.map(r => r.path);
}
export { formatQueryForEmbedding, formatDocForEmbedding };
export function chunkDocument(content: string, maxChars: number = CHUNK_SIZE_CHARS, overlapChars: number = CHUNK_OVERLAP_CHARS): { text: string; pos: number }[] {
if (content.length <= maxChars) {
return [{ text: content, pos: 0 }];
}
const chunks: { text: string; pos: number }[] = [];
let charPos = 0;
while (charPos < content.length) {
// Calculate end position for this chunk
let endPos = Math.min(charPos + maxChars, content.length);
// If not at the end, try to find a good break point
if (endPos < content.length) {
const slice = content.slice(charPos, endPos);
// Look for break points in the last 30% of the chunk
const searchStart = Math.floor(slice.length * 0.7);
const searchSlice = slice.slice(searchStart);
// Priority: paragraph > sentence > line > word
let breakOffset = -1;
const paragraphBreak = searchSlice.lastIndexOf('\n\n');
if (paragraphBreak >= 0) {
breakOffset = searchStart + paragraphBreak + 2;
} else {
const sentenceEnd = Math.max(
searchSlice.lastIndexOf('. '),
searchSlice.lastIndexOf('.\n'),
searchSlice.lastIndexOf('? '),
searchSlice.lastIndexOf('?\n'),
searchSlice.lastIndexOf('! '),
searchSlice.lastIndexOf('!\n')
);
if (sentenceEnd >= 0) {
breakOffset = searchStart + sentenceEnd + 2;
} else {
const lineBreak = searchSlice.lastIndexOf('\n');
if (lineBreak >= 0) {
breakOffset = searchStart + lineBreak + 1;
} else {
const spaceBreak = searchSlice.lastIndexOf(' ');
if (spaceBreak >= 0) {
breakOffset = searchStart + spaceBreak + 1;
}
}
}
}
if (breakOffset > 0) {
endPos = charPos + breakOffset;
}
}
// Ensure we make progress
if (endPos <= charPos) {
endPos = Math.min(charPos + maxChars, content.length);
}
chunks.push({ text: content.slice(charPos, endPos), pos: charPos });
// Move forward, but overlap with previous chunk
// For last chunk, don't overlap (just go to the end)
if (endPos >= content.length) {
break;
}
charPos = endPos - overlapChars;
const lastChunkPos = chunks.at(-1)!.pos;
if (charPos <= lastChunkPos) {
// Prevent infinite loop - move forward at least a bit
charPos = endPos;
}
}
return chunks;
}
/**
* Chunk a document by actual token count using the LLM tokenizer.
* More accurate than character-based chunking but requires async.
*/
export async function chunkDocumentByTokens(
content: string,
maxTokens: number = CHUNK_SIZE_TOKENS,
overlapTokens: number = CHUNK_OVERLAP_TOKENS
): Promise<{ text: string; pos: number; tokens: number }[]> {
const llm = getDefaultLlamaCpp();
// Tokenize once upfront
const allTokens = await llm.tokenize(content);
const totalTokens = allTokens.length;
if (totalTokens <= maxTokens) {
return [{ text: content, pos: 0, tokens: totalTokens }];
}
const chunks: { text: string; pos: number; tokens: number }[] = [];
const step = maxTokens - overlapTokens;
const avgCharsPerToken = content.length / totalTokens;
let tokenPos = 0;
while (tokenPos < totalTokens) {
const chunkEnd = Math.min(tokenPos + maxTokens, totalTokens);
const chunkTokens = allTokens.slice(tokenPos, chunkEnd);
let chunkText = await llm.detokenize(chunkTokens);
// Find a good break point if not at end of document
if (chunkEnd < totalTokens) {
const searchStart = Math.floor(chunkText.length * 0.7);
const searchSlice = chunkText.slice(searchStart);
let breakOffset = -1;
const paragraphBreak = searchSlice.lastIndexOf('\n\n');
if (paragraphBreak >= 0) {
breakOffset = paragraphBreak + 2;
} else {
const sentenceEnd = Math.max(
searchSlice.lastIndexOf('. '),
searchSlice.lastIndexOf('.\n'),
searchSlice.lastIndexOf('? '),
searchSlice.lastIndexOf('?\n'),
searchSlice.lastIndexOf('! '),
searchSlice.lastIndexOf('!\n')
);
if (sentenceEnd >= 0) {
breakOffset = sentenceEnd + 2;
} else {
const lineBreak = searchSlice.lastIndexOf('\n');
if (lineBreak >= 0) {
breakOffset = lineBreak + 1;
}
}
}
if (breakOffset >= 0) {
chunkText = chunkText.slice(0, searchStart + breakOffset);
}
}
// Approximate character position based on token position
const charPos = Math.floor(tokenPos * avgCharsPerToken);
chunks.push({ text: chunkText, pos: charPos, tokens: chunkTokens.length });
// Move forward
if (chunkEnd >= totalTokens) break;
// Advance by step tokens (maxTokens - overlap)
tokenPos += step;
}
return chunks;
}
// =============================================================================
// Fuzzy matching
// =============================================================================
function levenshtein(a: string, b: string): number {
const m = a.length, n = b.length;
if (m === 0) return n;
if (n === 0) return m;
const dp: number[][] = Array.from({ length: m + 1 }, () => Array(n + 1).fill(0));
for (let i = 0; i <= m; i++) dp[i]![0] = i;
for (let j = 0; j <= n; j++) dp[0]![j] = j;
for (let i = 1; i <= m; i++) {
for (let j = 1; j <= n; j++) {
const cost = a[i - 1] === b[j - 1] ? 0 : 1;
dp[i]![j] = Math.min(
dp[i - 1]![j]! + 1,
dp[i]![j - 1]! + 1,
dp[i - 1]![j - 1]! + cost
);
}
}
return dp[m]![n]!;
}
/**
* Normalize a docid input by stripping surrounding quotes and leading #.
* Handles: "#abc123", 'abc123', "abc123", #abc123, abc123
* Returns the bare hex string.
*/
export function normalizeDocid(docid: string): string {
let normalized = docid.trim();
// Strip surrounding quotes (single or double)
if ((normalized.startsWith('"') && normalized.endsWith('"')) ||
(normalized.startsWith("'") && normalized.endsWith("'"))) {
normalized = normalized.slice(1, -1);
}
// Strip leading # if present
if (normalized.startsWith('#')) {
normalized = normalized.slice(1);
}
return normalized;
}
/**
* Check if a string looks like a docid reference.
* Accepts: #abc123, abc123, "#abc123", "abc123", '#abc123', 'abc123'
* Returns true if the normalized form is a valid hex string of 6+ chars.
*/
export function isDocid(input: string): boolean {
const normalized = normalizeDocid(input);
// Must be at least 6 hex characters
return normalized.length >= 6 && /^[a-f0-9]+$/i.test(normalized);
}
/**
* Find a document by its short docid (first 6 characters of hash).
* Returns the document's virtual path if found, null otherwise.
* If multiple documents match the same short hash (collision), returns the first one.
*
* Accepts lenient input: #abc123, abc123, "#abc123", "abc123"
*/
export function findDocumentByDocid(db: Database, docid: string): { filepath: string; hash: string } | null {
const shortHash = normalizeDocid(docid);
if (shortHash.length < 1) return null;
// Look up documents where hash starts with the short hash
const doc = db.prepare(`
SELECT 'qmd://' || d.collection || '/' || d.path as filepath, d.hash
FROM documents d
WHERE d.hash LIKE ? AND d.active = 1
LIMIT 1
`).get(`${shortHash}%`) as { filepath: string; hash: string } | null;
return doc;
}
export function findSimilarFiles(db: Database, query: string, maxDistance: number = 3, limit: number = 5): string[] {
const allFiles = db.prepare(`
SELECT d.path
FROM documents d
WHERE d.active = 1
`).all() as { path: string }[];
const queryLower = query.toLowerCase();
const scored = allFiles
.map(f => ({ path: f.path, dist: levenshtein(f.path.toLowerCase(), queryLower) }))
.filter(f => f.dist <= maxDistance)
.sort((a, b) => a.dist - b.dist)
.slice(0, limit);
return scored.map(f => f.path);
}
export function matchFilesByGlob(db: Database, pattern: string): { filepath: string; displayPath: string; bodyLength: number }[] {
const allFiles = db.prepare(`
SELECT
'qmd://' || d.collection || '/' || d.path as virtual_path,
LENGTH(content.doc) as body_length,
d.path,
d.collection
FROM documents d
JOIN content ON content.hash = d.hash
WHERE d.active = 1
`).all() as { virtual_path: string; body_length: number; path: string; collection: string }[];
const glob = new Glob(pattern);
return allFiles
.filter(f => glob.match(f.virtual_path) || glob.match(f.path))
.map(f => ({
filepath: f.virtual_path, // Virtual path for precise lookup
displayPath: f.path, // Relative path for display
bodyLength: f.body_length
}));
}
// =============================================================================
// Context
// =============================================================================
/**
* Get context for a file path using hierarchical inheritance.
* Contexts are collection-scoped and inherit from parent directories.
* For example, context at "/talks" applies to "/talks/2024/keynote.md".
*
* @param db Database instance (unused - kept for compatibility)
* @param collectionName Collection name
* @param path Relative path within the collection
* @returns Context string or null if no context is defined
*/
export function getContextForPath(db: Database, collectionName: string, path: string): string | null {
const config = collectionsLoadConfig();
const coll = getCollection(collectionName);
if (!coll) return null;
// Collect ALL matching contexts (global + all path prefixes)
const contexts: string[] = [];
// Add global context if present
if (config.global_context) {
contexts.push(config.global_context);
}
// Add all matching path contexts (from most general to most specific)
if (coll.context) {
const normalizedPath = path.startsWith("/") ? path : `/${path}`;
// Collect all matching prefixes
const matchingContexts: { prefix: string; context: string }[] = [];
for (const [prefix, context] of Object.entries(coll.context)) {
const normalizedPrefix = prefix.startsWith("/") ? prefix : `/${prefix}`;
if (normalizedPath.startsWith(normalizedPrefix)) {
matchingContexts.push({ prefix: normalizedPrefix, context });
}
}
// Sort by prefix length (shortest/most general first)
matchingContexts.sort((a, b) => a.prefix.length - b.prefix.length);
// Add all matching contexts
for (const match of matchingContexts) {
contexts.push(match.context);
}
}
// Join all contexts with double newline
return contexts.length > 0 ? contexts.join('\n\n') : null;
}
/**
* Get context for a file path (virtual or filesystem).
* Resolves the collection and relative path using the YAML collections config.
*/
export function getContextForFile(db: Database, filepath: string): string | null {
// Handle undefined or null filepath
if (!filepath) return null;
// Get all collections from YAML config
const collections = collectionsListCollections();
const config = collectionsLoadConfig();
// Parse virtual path format: qmd://collection/path
let collectionName: string | null = null;
let relativePath: string | null = null;
const parsedVirtual = filepath.startsWith('qmd://') ? parseVirtualPath(filepath) : null;
if (parsedVirtual) {
collectionName = parsedVirtual.collectionName;
relativePath = parsedVirtual.path;
} else {
// Filesystem path: find which collection this absolute path belongs to
for (const coll of collections) {
// Skip collections with missing paths
if (!coll || !coll.path) continue;
if (filepath.startsWith(coll.path + '/') || filepath === coll.path) {
collectionName = coll.name;
// Extract relative path
relativePath = filepath.startsWith(coll.path + '/')
? filepath.slice(coll.path.length + 1)
: '';
break;
}
}
if (!collectionName || relativePath === null) return null;
}
// Get the collection from config
const coll = getCollection(collectionName);
if (!coll) return null;
// Verify this document exists in the database
const doc = db.prepare(`
SELECT d.path
FROM documents d
WHERE d.collection = ? AND d.path = ? AND d.active = 1
LIMIT 1
`).get(collectionName, relativePath) as { path: string } | null;
if (!doc) return null;
// Collect ALL matching contexts (global + all path prefixes)
const contexts: string[] = [];
// Add global context if present
if (config.global_context) {
contexts.push(config.global_context);
}
// Add all matching path contexts (from most general to most specific)
if (coll.context) {
const normalizedPath = relativePath.startsWith("/") ? relativePath : `/${relativePath}`;
// Collect all matching prefixes
const matchingContexts: { prefix: string; context: string }[] = [];
for (const [prefix, context] of Object.entries(coll.context)) {
const normalizedPrefix = prefix.startsWith("/") ? prefix : `/${prefix}`;
if (normalizedPath.startsWith(normalizedPrefix)) {
matchingContexts.push({ prefix: normalizedPrefix, context });
}
}
// Sort by prefix length (shortest/most general first)
matchingContexts.sort((a, b) => a.prefix.length - b.prefix.length);
// Add all matching contexts
for (const match of matchingContexts) {
contexts.push(match.context);
}
}
// Join all contexts with double newline
return contexts.length > 0 ? contexts.join('\n\n') : null;
}
/**
* Get collection by name from YAML config.
* Returns collection metadata from ~/.config/qmd/index.yml
*/
export function getCollectionByName(db: Database, name: string): { name: string; pwd: string; glob_pattern: string } | null {
const collection = getCollection(name);
if (!collection) return null;
return {
name: collection.name,
pwd: collection.path,
glob_pattern: collection.pattern,
};
}
/**
* List all collections with document counts from database.
* Merges YAML config with database statistics.
*/
export function listCollections(db: Database): { name: string; pwd: string; glob_pattern: string; doc_count: number; active_count: number; last_modified: string | null }[] {
const collections = collectionsListCollections();
// Get document counts from database for each collection
const result = collections.map(coll => {
const stats = db.prepare(`
SELECT
COUNT(d.id) as doc_count,
SUM(CASE WHEN d.active = 1 THEN 1 ELSE 0 END) as active_count,
MAX(d.modified_at) as last_modified
FROM documents d
WHERE d.collection = ?
`).get(coll.name) as { doc_count: number; active_count: number; last_modified: string | null } | null;
return {
name: coll.name,
pwd: coll.path,
glob_pattern: coll.pattern,
doc_count: stats?.doc_count || 0,
active_count: stats?.active_count || 0,
last_modified: stats?.last_modified || null,
};
});
return result;
}
/**
* Remove a collection and clean up its documents.
* Uses collections.ts to remove from YAML config and cleans up database.
*/
export function removeCollection(db: Database, collectionName: string): { deletedDocs: number; cleanedHashes: number } {
// Delete documents from database
const docResult = db.prepare(`DELETE FROM documents WHERE collection = ?`).run(collectionName);
// Clean up orphaned content hashes
const cleanupResult = db.prepare(`
DELETE FROM content
WHERE hash NOT IN (SELECT DISTINCT hash FROM documents WHERE active = 1)
`).run();
// Remove from YAML config (returns true if found and removed)
collectionsRemoveCollection(collectionName);
return {
deletedDocs: docResult.changes,
cleanedHashes: cleanupResult.changes
};
}
/**
* Rename a collection.
* Updates both YAML config and database documents table.
*/
export function renameCollection(db: Database, oldName: string, newName: string): void {
// Update all documents with the new collection name in database
db.prepare(`UPDATE documents SET collection = ? WHERE collection = ?`)
.run(newName, oldName);
// Rename in YAML config
collectionsRenameCollection(oldName, newName);
}
// =============================================================================
// Context Management Operations
// =============================================================================
/**
* Insert or update a context for a specific collection and path prefix.
*/
export function insertContext(db: Database, collectionId: number, pathPrefix: string, context: string): void {
// Get collection name from ID
const coll = db.prepare(`SELECT name FROM collections WHERE id = ?`).get(collectionId) as { name: string } | null;
if (!coll) {
throw new Error(`Collection with id ${collectionId} not found`);
}
// Use collections.ts to add context
collectionsAddContext(coll.name, pathPrefix, context);
}
/**
* Delete a context for a specific collection and path prefix.
* Returns the number of contexts deleted.
*/
export function deleteContext(db: Database, collectionName: string, pathPrefix: string): number {
// Use collections.ts to remove context
const success = collectionsRemoveContext(collectionName, pathPrefix);
return success ? 1 : 0;
}
/**
* Delete all global contexts (contexts with empty path_prefix).
* Returns the number of contexts deleted.
*/
export function deleteGlobalContexts(db: Database): number {
let deletedCount = 0;
// Remove global context
setGlobalContext(undefined);
deletedCount++;
// Remove root context (empty string) from all collections
const collections = collectionsListCollections();
for (const coll of collections) {
const success = collectionsRemoveContext(coll.name, '');
if (success) {
deletedCount++;
}
}
return deletedCount;
}
/**
* List all contexts, grouped by collection.
* Returns contexts ordered by collection name, then by path prefix length (longest first).
*/
export function listPathContexts(db: Database): { collection_name: string; path_prefix: string; context: string }[] {
const allContexts = collectionsListAllContexts();
// Convert to expected format and sort
return allContexts.map(ctx => ({
collection_name: ctx.collection,
path_prefix: ctx.path,
context: ctx.context,
})).sort((a, b) => {
// Sort by collection name first
if (a.collection_name !== b.collection_name) {
return a.collection_name.localeCompare(b.collection_name);
}
// Then by path prefix length (longest first)
if (a.path_prefix.length !== b.path_prefix.length) {
return b.path_prefix.length - a.path_prefix.length;
}
// Then alphabetically
return a.path_prefix.localeCompare(b.path_prefix);
});
}
/**
* Get all collections (name only - from YAML config).
*/
export function getAllCollections(db: Database): { name: string }[] {
const collections = collectionsListCollections();
return collections.map(c => ({ name: c.name }));
}
/**
* Check which collections don't have any context defined.
* Returns collections that have no context entries at all (not even root context).
*/
export function getCollectionsWithoutContext(db: Database): { name: string; pwd: string; doc_count: number }[] {
// Get all collections from YAML config
const yamlCollections = collectionsListCollections();
// Filter to those without context
const collectionsWithoutContext: { name: string; pwd: string; doc_count: number }[] = [];
for (const coll of yamlCollections) {
// Check if collection has any context
if (!coll.context || Object.keys(coll.context).length === 0) {
// Get doc count from database
const stats = db.prepare(`
SELECT COUNT(d.id) as doc_count
FROM documents d
WHERE d.collection = ? AND d.active = 1
`).get(coll.name) as { doc_count: number } | null;
collectionsWithoutContext.push({
name: coll.name,
pwd: coll.path,
doc_count: stats?.doc_count || 0,
});
}
}
return collectionsWithoutContext.sort((a, b) => a.name.localeCompare(b.name));
}
/**
* Get top-level directories in a collection that don't have context.
* Useful for suggesting where context might be needed.
*/
export function getTopLevelPathsWithoutContext(db: Database, collectionName: string): string[] {
// Get all paths in the collection from database
const paths = db.prepare(`
SELECT DISTINCT path FROM documents
WHERE collection = ? AND active = 1
`).all(collectionName) as { path: string }[];
// Get existing contexts for this collection from YAML
const yamlColl = getCollection(collectionName);
if (!yamlColl) return [];
const contextPrefixes = new Set<string>();
if (yamlColl.context) {
for (const prefix of Object.keys(yamlColl.context)) {
contextPrefixes.add(prefix);
}
}
// Extract top-level directories (first path component)
const topLevelDirs = new Set<string>();
for (const { path } of paths) {
const parts = path.split('/').filter(Boolean);
if (parts.length > 1) {
const dir = parts[0];
if (dir) topLevelDirs.add(dir);
}
}
// Filter out directories that already have context (exact or parent)
const missing: string[] = [];
for (const dir of topLevelDirs) {
let hasContext = false;
// Check if this dir or any parent has context
for (const prefix of contextPrefixes) {
if (prefix === '' || prefix === dir || dir.startsWith(prefix + '/')) {
hasContext = true;
break;
}
}
if (!hasContext) {
missing.push(dir);
}
}
return missing.sort();
}
// =============================================================================
// FTS Search
// =============================================================================
function sanitizeFTS5Term(term: string): string {
return term.replace(/[^\p{L}\p{N}']/gu, '').toLowerCase();
}
function buildFTS5Query(query: string): string | null {
const terms = query.split(/\s+/)
.map(t => sanitizeFTS5Term(t))
.filter(t => t.length > 0);
if (terms.length === 0) return null;
if (terms.length === 1) return `"${terms[0]}"*`;
return terms.map(t => `"${t}"*`).join(' AND ');
}
export function searchFTS(db: Database, query: string, limit: number = 20, collectionId?: number): SearchResult[] {
const ftsQuery = buildFTS5Query(query);
if (!ftsQuery) return [];
let sql = `
SELECT
'qmd://' || d.collection || '/' || d.path as filepath,
d.collection || '/' || d.path as display_path,
d.title,
content.doc as body,
d.hash,
bm25(documents_fts, 10.0, 1.0) as bm25_score
FROM documents_fts f
JOIN documents d ON d.id = f.rowid
JOIN content ON content.hash = d.hash
WHERE documents_fts MATCH ? AND d.active = 1
`;
const params: (string | number)[] = [ftsQuery];
if (collectionId) {
// Note: collectionId is a legacy parameter that should be phased out
// Collections are now managed in YAML. For now, we interpret it as a collection name filter.
// This code path is likely unused as collection filtering should be done at CLI level.
sql += ` AND d.collection = ?`;
params.push(String(collectionId));
}
// bm25 lower is better; sort ascending.
sql += ` ORDER BY bm25_score ASC LIMIT ?`;
params.push(limit);
const rows = db.prepare(sql).all(...params) as { filepath: string; display_path: string; title: string; body: string; hash: string; bm25_score: number }[];
return rows.map(row => {
const collectionName = row.filepath.split('//')[1]?.split('/')[0] || "";
// Convert bm25 (negative, lower is better) into a stable (0..1] score where higher is better.
// BM25 scores in SQLite FTS5 are negative (e.g., -10 is strong, -2 is weak).
// Avoid per-query normalization so "strong signal" heuristics can work.
const score = 1 / (1 + Math.abs(row.bm25_score));
return {
filepath: row.filepath,
displayPath: row.display_path,
title: row.title,
hash: row.hash,
docid: getDocid(row.hash),
collectionName,
modifiedAt: "", // Not available in FTS query
bodyLength: row.body.length,
body: row.body,
context: getContextForFile(db, row.filepath),
score,
source: "fts" as const,
};
});
}
// =============================================================================
// Vector Search
// =============================================================================
export async function searchVec(db: Database, query: string, model: string, limit: number = 20, collectionName?: string, session?: ILLMSession): Promise<SearchResult[]> {
const tableExists = db.prepare(`SELECT name FROM sqlite_master WHERE type='table' AND name='vectors_vec'`).get();
if (!tableExists) return [];
const embedding = await getEmbedding(query, model, true, session);
if (!embedding) return [];
// IMPORTANT: We use a two-step query approach here because sqlite-vec virtual tables
// hang indefinitely when combined with JOINs in the same query. Do NOT try to
// "optimize" this by combining into a single query with JOINs - it will break.
// See: https://github.com/tobi/qmd/pull/23
// Step 1: Get vector matches from sqlite-vec (no JOINs allowed)
const vecResults = db.prepare(`
SELECT hash_seq, distance
FROM vectors_vec
WHERE embedding MATCH ? AND k = ?
`).all(new Float32Array(embedding), limit * 3) as { hash_seq: string; distance: number }[];
if (vecResults.length === 0) return [];
// Step 2: Get chunk info and document data
const hashSeqs = vecResults.map(r => r.hash_seq);
const distanceMap = new Map(vecResults.map(r => [r.hash_seq, r.distance]));
// Build query for document lookup
const placeholders = hashSeqs.map(() => '?').join(',');
let docSql = `
SELECT
cv.hash || '_' || cv.seq as hash_seq,
cv.hash,
cv.pos,
'qmd://' || d.collection || '/' || d.path as filepath,
d.collection || '/' || d.path as display_path,
d.title,
content.doc as body
FROM content_vectors cv
JOIN documents d ON d.hash = cv.hash AND d.active = 1
JOIN content ON content.hash = d.hash
WHERE cv.hash || '_' || cv.seq IN (${placeholders})
`;
const params: string[] = [...hashSeqs];
if (collectionName) {
docSql += ` AND d.collection = ?`;
params.push(collectionName);
}
const docRows = db.prepare(docSql).all(...params) as {
hash_seq: string; hash: string; pos: number; filepath: string;
display_path: string; title: string; body: string;
}[];
// Combine with distances and dedupe by filepath
const seen = new Map<string, { row: typeof docRows[0]; bestDist: number }>();
for (const row of docRows) {
const distance = distanceMap.get(row.hash_seq) ?? 1;
const existing = seen.get(row.filepath);
if (!existing || distance < existing.bestDist) {
seen.set(row.filepath, { row, bestDist: distance });
}
}
return Array.from(seen.values())
.sort((a, b) => a.bestDist - b.bestDist)
.slice(0, limit)
.map(({ row, bestDist }) => {
const collectionName = row.filepath.split('//')[1]?.split('/')[0] || "";
return {
filepath: row.filepath,
displayPath: row.display_path,
title: row.title,
hash: row.hash,
docid: getDocid(row.hash),
collectionName,
modifiedAt: "", // Not available in vec query
bodyLength: row.body.length,
body: row.body,
context: getContextForFile(db, row.filepath),
score: 1 - bestDist, // Cosine similarity = 1 - cosine distance
source: "vec" as const,
chunkPos: row.pos,
};
});
}
// =============================================================================
// Embeddings
// =============================================================================
async function getEmbedding(text: string, model: string, isQuery: boolean, session?: ILLMSession): Promise<number[] | null> {
// Format text using the appropriate prompt template
const formattedText = isQuery ? formatQueryForEmbedding(text) : formatDocForEmbedding(text);
const result = session
? await session.embed(formattedText, { model, isQuery })
: await getDefaultLlamaCpp().embed(formattedText, { model, isQuery });
return result?.embedding || null;
}
/**
* Get all unique content hashes that need embeddings (from active documents).
* Returns hash, document body, and a sample path for display purposes.
*/
export function getHashesForEmbedding(db: Database): { hash: string; body: string; path: string }[] {
return db.prepare(`
SELECT d.hash, c.doc as body, MIN(d.path) as path
FROM documents d
JOIN content c ON d.hash = c.hash
LEFT JOIN content_vectors v ON d.hash = v.hash AND v.seq = 0
WHERE d.active = 1 AND v.hash IS NULL
GROUP BY d.hash
`).all() as { hash: string; body: string; path: string }[];
}
/**
* Clear all embeddings from the database (force re-index).
* Deletes all rows from content_vectors and drops the vectors_vec table.
*/
export function clearAllEmbeddings(db: Database): void {
db.exec(`DELETE FROM content_vectors`);
db.exec(`DROP TABLE IF EXISTS vectors_vec`);
}
/**
* Insert a single embedding into both content_vectors and vectors_vec tables.
* The hash_seq key is formatted as "hash_seq" for the vectors_vec table.
*/
export function insertEmbedding(
db: Database,
hash: string,
seq: number,
pos: number,
embedding: Float32Array,
model: string,
embeddedAt: string
): void {
const hashSeq = `${hash}_${seq}`;
const insertVecStmt = db.prepare(`INSERT OR REPLACE INTO vectors_vec (hash_seq, embedding) VALUES (?, ?)`);
const insertContentVectorStmt = db.prepare(`INSERT OR REPLACE INTO content_vectors (hash, seq, pos, model, embedded_at) VALUES (?, ?, ?, ?, ?)`);
insertVecStmt.run(hashSeq, embedding);
insertContentVectorStmt.run(hash, seq, pos, model, embeddedAt);
}
// =============================================================================
// Query expansion
// =============================================================================
export async function expandQuery(query: string, model: string = DEFAULT_QUERY_MODEL, db: Database): Promise<string[]> {
// Check cache first
const cacheKey = getCacheKey("expandQuery", { query, model });
const cached = getCachedResult(db, cacheKey);
if (cached) {
const lines = cached.split('\n').map(l => l.trim()).filter(l => l.length > 0);
return [query, ...lines.slice(0, 2)];
}
const llm = getDefaultLlamaCpp();
// Note: LlamaCpp uses hardcoded model, model parameter is ignored
const results = await llm.expandQuery(query);
const queryTexts = results.map(r => r.text);
// Cache the expanded queries (excluding original)
const expandedOnly = queryTexts.filter(t => t !== query);
if (expandedOnly.length > 0) {
setCachedResult(db, cacheKey, expandedOnly.join('\n'));
}
return Array.from(new Set([query, ...queryTexts]));
}
// =============================================================================
// Reranking
// =============================================================================
export async function rerank(query: string, documents: { file: string; text: string }[], model: string = DEFAULT_RERANK_MODEL, db: Database): Promise<{ file: string; score: number }[]> {
const cachedResults: Map<string, number> = new Map();
const uncachedDocs: RerankDocument[] = [];
// Check cache for each document
for (const doc of documents) {
const cacheKey = getCacheKey("rerank", { query, file: doc.file, model });
const cached = getCachedResult(db, cacheKey);
if (cached !== null) {
cachedResults.set(doc.file, parseFloat(cached));
} else {
uncachedDocs.push({ file: doc.file, text: doc.text });
}
}
// Rerank uncached documents using LlamaCpp
if (uncachedDocs.length > 0) {
const llm = getDefaultLlamaCpp();
const rerankResult = await llm.rerank(query, uncachedDocs, { model });
// Cache results
for (const result of rerankResult.results) {
const cacheKey = getCacheKey("rerank", { query, file: result.file, model });
setCachedResult(db, cacheKey, result.score.toString());
cachedResults.set(result.file, result.score);
}
}
// Return all results sorted by score
return documents
.map(doc => ({ file: doc.file, score: cachedResults.get(doc.file) || 0 }))
.sort((a, b) => b.score - a.score);
}
// =============================================================================
// Reciprocal Rank Fusion
// =============================================================================
export function reciprocalRankFusion(
resultLists: RankedResult[][],
weights: number[] = [],
k: number = 60
): RankedResult[] {
const scores = new Map<string, { result: RankedResult; rrfScore: number; topRank: number }>();
for (let listIdx = 0; listIdx < resultLists.length; listIdx++) {
const list = resultLists[listIdx];
if (!list) continue;
const weight = weights[listIdx] ?? 1.0;
for (let rank = 0; rank < list.length; rank++) {
const result = list[rank];
if (!result) continue;
const rrfContribution = weight / (k + rank + 1);
const existing = scores.get(result.file);
if (existing) {
existing.rrfScore += rrfContribution;
existing.topRank = Math.min(existing.topRank, rank);
} else {
scores.set(result.file, {
result,
rrfScore: rrfContribution,
topRank: rank,
});
}
}
}
// Top-rank bonus
for (const entry of scores.values()) {
if (entry.topRank === 0) {
entry.rrfScore += 0.05;
} else if (entry.topRank <= 2) {
entry.rrfScore += 0.02;
}
}
return Array.from(scores.values())
.sort((a, b) => b.rrfScore - a.rrfScore)
.map(e => ({ ...e.result, score: e.rrfScore }));
}
// =============================================================================
// Document retrieval
// =============================================================================
type DbDocRow = {
virtual_path: string;
display_path: string;
title: string;
hash: string;
collection: string;
path: string;
modified_at: string;
body_length: number;
body?: string;
};
/**
* Find a document by filename/path, docid (#hash), or with fuzzy matching.
* Returns document metadata without body by default.
*
* Supports:
* - Virtual paths: qmd://collection/path/to/file.md
* - Absolute paths: /path/to/file.md
* - Relative paths: path/to/file.md
* - Short docid: #abc123 (first 6 chars of hash)
*/
export function findDocument(db: Database, filename: string, options: { includeBody?: boolean } = {}): DocumentResult | DocumentNotFound {
let filepath = filename;
const colonMatch = filepath.match(/:(\d+)$/);
if (colonMatch) {
filepath = filepath.slice(0, -colonMatch[0].length);
}
// Check if this is a docid lookup (#abc123, abc123, "#abc123", "abc123", etc.)
if (isDocid(filepath)) {
const docidMatch = findDocumentByDocid(db, filepath);
if (docidMatch) {
filepath = docidMatch.filepath;
} else {
return { error: "not_found", query: filename, similarFiles: [] };
}
}
if (filepath.startsWith('~/')) {
filepath = homedir() + filepath.slice(1);
}
const bodyCol = options.includeBody ? `, content.doc as body` : ``;
// Build computed columns
// Note: absoluteFilepath is computed from YAML collections after query
const selectCols = `
'qmd://' || d.collection || '/' || d.path as virtual_path,
d.collection || '/' || d.path as display_path,
d.title,
d.hash,
d.collection,
d.modified_at,
LENGTH(content.doc) as body_length
${bodyCol}
`;
// Try to match by virtual path first
let doc = db.prepare(`
SELECT ${selectCols}
FROM documents d
JOIN content ON content.hash = d.hash
WHERE 'qmd://' || d.collection || '/' || d.path = ? AND d.active = 1
`).get(filepath) as DbDocRow | null;
// Try fuzzy match by virtual path
if (!doc) {
doc = db.prepare(`
SELECT ${selectCols}
FROM documents d
JOIN content ON content.hash = d.hash
WHERE 'qmd://' || d.collection || '/' || d.path LIKE ? AND d.active = 1
LIMIT 1
`).get(`%${filepath}`) as DbDocRow | null;
}
// Try to match by absolute path (requires looking up collection paths from YAML)
if (!doc && !filepath.startsWith('qmd://')) {
const collections = collectionsListCollections();
for (const coll of collections) {
let relativePath: string | null = null;
// If filepath is absolute and starts with collection path, extract relative part
if (filepath.startsWith(coll.path + '/')) {
relativePath = filepath.slice(coll.path.length + 1);
}
// Otherwise treat filepath as relative to collection
else if (!filepath.startsWith('/')) {
relativePath = filepath;
}
if (relativePath) {
doc = db.prepare(`
SELECT ${selectCols}
FROM documents d
JOIN content ON content.hash = d.hash
WHERE d.collection = ? AND d.path = ? AND d.active = 1
`).get(coll.name, relativePath) as DbDocRow | null;
if (doc) break;
}
}
}
if (!doc) {
const similar = findSimilarFiles(db, filepath, 5, 5);
return { error: "not_found", query: filename, similarFiles: similar };
}
// Get context using virtual path
const virtualPath = doc.virtual_path || `qmd://${doc.collection}/${doc.display_path}`;
const context = getContextForFile(db, virtualPath);
return {
filepath: virtualPath,
displayPath: doc.display_path,
title: doc.title,
context,
hash: doc.hash,
docid: getDocid(doc.hash),
collectionName: doc.collection,
modifiedAt: doc.modified_at,
bodyLength: doc.body_length,
...(options.includeBody && doc.body !== undefined && { body: doc.body }),
};
}
/**
* Get the body content for a document
* Optionally slice by line range
*/
export function getDocumentBody(db: Database, doc: DocumentResult | { filepath: string }, fromLine?: number, maxLines?: number): string | null {
const filepath = doc.filepath;
// Try to resolve document by filepath (absolute or virtual)
let row: { body: string } | null = null;
// Try virtual path first
if (filepath.startsWith('qmd://')) {
row = db.prepare(`
SELECT content.doc as body
FROM documents d
JOIN content ON content.hash = d.hash
WHERE 'qmd://' || d.collection || '/' || d.path = ? AND d.active = 1
`).get(filepath) as { body: string } | null;
}
// Try absolute path by looking up in YAML collections
if (!row) {
const collections = collectionsListCollections();
for (const coll of collections) {
if (filepath.startsWith(coll.path + '/')) {
const relativePath = filepath.slice(coll.path.length + 1);
row = db.prepare(`
SELECT content.doc as body
FROM documents d
JOIN content ON content.hash = d.hash
WHERE d.collection = ? AND d.path = ? AND d.active = 1
`).get(coll.name, relativePath) as { body: string } | null;
if (row) break;
}
}
}
if (!row) return null;
let body = row.body;
if (fromLine !== undefined || maxLines !== undefined) {
const lines = body.split('\n');
const start = (fromLine || 1) - 1;
const end = maxLines !== undefined ? start + maxLines : lines.length;
body = lines.slice(start, end).join('\n');
}
return body;
}
/**
* Find multiple documents by glob pattern or comma-separated list
* Returns documents without body by default (use getDocumentBody to load)
*/
export function findDocuments(
db: Database,
pattern: string,
options: { includeBody?: boolean; maxBytes?: number } = {}
): { docs: MultiGetResult[]; errors: string[] } {
const isCommaSeparated = pattern.includes(',') && !pattern.includes('*') && !pattern.includes('?');
const errors: string[] = [];
const maxBytes = options.maxBytes ?? DEFAULT_MULTI_GET_MAX_BYTES;
const bodyCol = options.includeBody ? `, content.doc as body` : ``;
const selectCols = `
'qmd://' || d.collection || '/' || d.path as virtual_path,
d.collection || '/' || d.path as display_path,
d.title,
d.hash,
d.collection,
d.modified_at,
LENGTH(content.doc) as body_length
${bodyCol}
`;
let fileRows: DbDocRow[];
if (isCommaSeparated) {
const names = pattern.split(',').map(s => s.trim()).filter(Boolean);
fileRows = [];
for (const name of names) {
let doc = db.prepare(`
SELECT ${selectCols}
FROM documents d
JOIN content ON content.hash = d.hash
WHERE 'qmd://' || d.collection || '/' || d.path = ? AND d.active = 1
`).get(name) as DbDocRow | null;
if (!doc) {
doc = db.prepare(`
SELECT ${selectCols}
FROM documents d
JOIN content ON content.hash = d.hash
WHERE 'qmd://' || d.collection || '/' || d.path LIKE ? AND d.active = 1
LIMIT 1
`).get(`%${name}`) as DbDocRow | null;
}
if (doc) {
fileRows.push(doc);
} else {
const similar = findSimilarFiles(db, name, 5, 3);
let msg = `File not found: ${name}`;
if (similar.length > 0) {
msg += ` (did you mean: ${similar.join(', ')}?)`;
}
errors.push(msg);
}
}
} else {
// Glob pattern match
const matched = matchFilesByGlob(db, pattern);
if (matched.length === 0) {
errors.push(`No files matched pattern: ${pattern}`);
return { docs: [], errors };
}
const virtualPaths = matched.map(m => m.filepath);
const placeholders = virtualPaths.map(() => '?').join(',');
fileRows = db.prepare(`
SELECT ${selectCols}
FROM documents d
JOIN content ON content.hash = d.hash
WHERE 'qmd://' || d.collection || '/' || d.path IN (${placeholders}) AND d.active = 1
`).all(...virtualPaths) as DbDocRow[];
}
const results: MultiGetResult[] = [];
for (const row of fileRows) {
// Get context using virtual path
const virtualPath = row.virtual_path || `qmd://${row.collection}/${row.display_path}`;
const context = getContextForFile(db, virtualPath);
if (row.body_length > maxBytes) {
results.push({
doc: { filepath: virtualPath, displayPath: row.display_path },
skipped: true,
skipReason: `File too large (${Math.round(row.body_length / 1024)}KB > ${Math.round(maxBytes / 1024)}KB)`,
});
continue;
}
results.push({
doc: {
filepath: virtualPath,
displayPath: row.display_path,
title: row.title || row.display_path.split('/').pop() || row.display_path,
context,
hash: row.hash,
docid: getDocid(row.hash),
collectionName: row.collection,
modifiedAt: row.modified_at,
bodyLength: row.body_length,
...(options.includeBody && row.body !== undefined && { body: row.body }),
},
skipped: false,
});
}
return { docs: results, errors };
}
// =============================================================================
// Status
// =============================================================================
export function getStatus(db: Database): IndexStatus {
// Load collections from YAML
const yamlCollections = collectionsListCollections();
// Get document counts and last update times for each collection
const collections = yamlCollections.map(col => {
const stats = db.prepare(`
SELECT
COUNT(*) as active_count,
MAX(modified_at) as last_doc_update
FROM documents
WHERE collection = ? AND active = 1
`).get(col.name) as { active_count: number; last_doc_update: string | null };
return {
name: col.name,
path: col.path,
pattern: col.pattern,
documents: stats.active_count,
lastUpdated: stats.last_doc_update || new Date().toISOString(),
};
});
// Sort by last update time (most recent first)
collections.sort((a, b) => {
if (!a.lastUpdated) return 1;
if (!b.lastUpdated) return -1;
return new Date(b.lastUpdated).getTime() - new Date(a.lastUpdated).getTime();
});
const totalDocs = (db.prepare(`SELECT COUNT(*) as c FROM documents WHERE active = 1`).get() as { c: number }).c;
const needsEmbedding = getHashesNeedingEmbedding(db);
const hasVectors = !!db.prepare(`SELECT name FROM sqlite_master WHERE type='table' AND name='vectors_vec'`).get();
return {
totalDocuments: totalDocs,
needsEmbedding,
hasVectorIndex: hasVectors,
collections,
};
}
// =============================================================================
// Snippet extraction
// =============================================================================
export type SnippetResult = {
line: number; // 1-indexed line number of best match
snippet: string; // The snippet text with diff-style header
linesBefore: number; // Lines in document before snippet
linesAfter: number; // Lines in document after snippet
snippetLines: number; // Number of lines in snippet
};
export function extractSnippet(body: string, query: string, maxLen = 500, chunkPos?: number): SnippetResult {
const totalLines = body.split('\n').length;
let searchBody = body;
let lineOffset = 0;
if (chunkPos && chunkPos > 0) {
const contextStart = Math.max(0, chunkPos - 100);
const contextEnd = Math.min(body.length, chunkPos + maxLen + 100);
searchBody = body.slice(contextStart, contextEnd);
if (contextStart > 0) {
lineOffset = body.slice(0, contextStart).split('\n').length - 1;
}
}
const lines = searchBody.split('\n');
const queryTerms = query.toLowerCase().split(/\s+/).filter(t => t.length > 0);
let bestLine = 0, bestScore = -1;
for (let i = 0; i < lines.length; i++) {
const lineLower = (lines[i] ?? "").toLowerCase();
let score = 0;
for (const term of queryTerms) {
if (lineLower.includes(term)) score++;
}
if (score > bestScore) {
bestScore = score;
bestLine = i;
}
}
const start = Math.max(0, bestLine - 1);
const end = Math.min(lines.length, bestLine + 3);
const snippetLines = lines.slice(start, end);
let snippetText = snippetLines.join('\n');
// If we focused on a chunk window and it produced an empty/whitespace-only snippet,
// fall back to a full-document snippet so we always show something useful.
if (chunkPos && chunkPos > 0 && snippetText.trim().length === 0) {
return extractSnippet(body, query, maxLen, undefined);
}
if (snippetText.length > maxLen) snippetText = snippetText.substring(0, maxLen - 3) + "...";
const absoluteStart = lineOffset + start + 1; // 1-indexed
const snippetLineCount = snippetLines.length;
const linesBefore = absoluteStart - 1;
const linesAfter = totalLines - (absoluteStart + snippetLineCount - 1);
// Format with diff-style header: @@ -start,count @@ (linesBefore before, linesAfter after)
const header = `@@ -${absoluteStart},${snippetLineCount} @@ (${linesBefore} before, ${linesAfter} after)`;
const snippet = `${header}\n${snippetText}`;
return {
line: lineOffset + bestLine + 1,
snippet,
linesBefore,
linesAfter,
snippetLines: snippetLineCount,
};
}