fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/zod-to-json-schema/dist/esm/parsers/tuple.js

@@ -0,0 +1,32 @@
+import { parseDef } from "../parseDef.js";
+export function parseTupleDef(def, refs) {
+    if (def.rest) {
+        return {
+            type: "array",
+            minItems: def.items.length,
+            items: def.items
+                .map((x, i) => parseDef(x._def, {
+                ...refs,
+                currentPath: [...refs.currentPath, "items", `${i}`],
+            }))
+                .reduce((acc, x) => (x === undefined ? acc : [...acc, x]), []),
+            additionalItems: parseDef(def.rest._def, {
+                ...refs,
+                currentPath: [...refs.currentPath, "additionalItems"],
+            }),
+        };
+    }
+    else {
+        return {
+            type: "array",
+            minItems: def.items.length,
+            maxItems: def.items.length,
+            items: def.items
+                .map((x, i) => parseDef(x._def, {
+                ...refs,
+                currentPath: [...refs.currentPath, "items", `${i}`],
+            }))
+                .reduce((acc, x) => (x === undefined ? acc : [...acc, x]), []),
+        };
+    }
+}