fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/zod/v4/mini/external.js

@@ -0,0 +1,13 @@
+export * as core from "../core/index.js";
+export * from "./parse.js";
+export * from "./schemas.js";
+export * from "./checks.js";
+export { globalRegistry, registry, config, $output, $input, $brand, function, clone, regexes, treeifyError, prettifyError, formatError, flattenError, toJSONSchema, TimePrecision, NEVER, } from "../core/index.js";
+export * as locales from "../locales/index.js";
+/** A special constant with type `never` */
+// export const NEVER = {} as never;
+// iso
+export * as iso from "./iso.js";
+export { ZodMiniISODateTime, ZodMiniISODate, ZodMiniISOTime, ZodMiniISODuration, } from "./iso.js";
+// coerce
+export * as coerce from "./coerce.js";

claude-code-source/node_modules/zod/v4/mini/index.js

@@ -0,0 +1,3 @@
+import * as z from "./external.js";
+export * from "./external.js";
+export { z };

claude-code-source/node_modules/zod/v4/mini/parse.js

@@ -0,0 +1 @@
+export { parse, safeParse, parseAsync, safeParseAsync } from "../core/index.js";