fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/zod/v4/classic/checks.js

@@ -0,0 +1 @@
+export { _lt as lt, _lte as lte, _gt as gt, _gte as gte, _positive as positive, _negative as negative, _nonpositive as nonpositive, _nonnegative as nonnegative, _multipleOf as multipleOf, _maxSize as maxSize, _minSize as minSize, _size as size, _maxLength as maxLength, _minLength as minLength, _length as length, _regex as regex, _lowercase as lowercase, _uppercase as uppercase, _includes as includes, _startsWith as startsWith, _endsWith as endsWith, _property as property, _mime as mime, _overwrite as overwrite, _normalize as normalize, _trim as trim, _toLowerCase as toLowerCase, _toUpperCase as toUpperCase, } from "../core/index.js";