fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/yaml/dist/schema/common/null.js

@@ -0,0 +1,17 @@
+'use strict';
+
+var Scalar = require('../../nodes/Scalar.js');
+
+const nullTag = {
+    identify: value => value == null,
+    createNode: () => new Scalar.Scalar(null),
+    default: true,
+    tag: 'tag:yaml.org,2002:null',
+    test: /^(?:~|[Nn]ull|NULL)?$/,
+    resolve: () => new Scalar.Scalar(null),
+    stringify: ({ source }, ctx) => typeof source === 'string' && nullTag.test.test(source)
+        ? source
+        : ctx.options.nullStr
+};
+
+exports.nullTag = nullTag;