fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/yaml/dist/schema/common/map.js

@@ -0,0 +1,19 @@
+'use strict';
+
+var identity = require('../../nodes/identity.js');
+var YAMLMap = require('../../nodes/YAMLMap.js');
+
+const map = {
+    collection: 'map',
+    default: true,
+    nodeClass: YAMLMap.YAMLMap,
+    tag: 'tag:yaml.org,2002:map',
+    resolve(map, onError) {
+        if (!identity.isMap(map))
+            onError('Expected a mapping for this tag');
+        return map;
+    },
+    createNode: (schema, obj, ctx) => YAMLMap.YAMLMap.from(schema, obj, ctx)
+};
+
+exports.map = map;

claude-code-source/node_modules/yaml/dist/schema/common/null.js

@@ -0,0 +1,17 @@
+'use strict';
+
+var Scalar = require('../../nodes/Scalar.js');
+
+const nullTag = {
+    identify: value => value == null,
+    createNode: () => new Scalar.Scalar(null),
+    default: true,
+    tag: 'tag:yaml.org,2002:null',
+    test: /^(?:~|[Nn]ull|NULL)?$/,
+    resolve: () => new Scalar.Scalar(null),
+    stringify: ({ source }, ctx) => typeof source === 'string' && nullTag.test.test(source)
+        ? source
+        : ctx.options.nullStr
+};
+
+exports.nullTag = nullTag;

claude-code-source/node_modules/yaml/dist/schema/common/seq.js

@@ -0,0 +1,19 @@
+'use strict';
+
+var identity = require('../../nodes/identity.js');
+var YAMLSeq = require('../../nodes/YAMLSeq.js');
+
+const seq = {
+    collection: 'seq',
+    default: true,
+    nodeClass: YAMLSeq.YAMLSeq,
+    tag: 'tag:yaml.org,2002:seq',
+    resolve(seq, onError) {
+        if (!identity.isSeq(seq))
+            onError('Expected a sequence for this tag');
+        return seq;
+    },
+    createNode: (schema, obj, ctx) => YAMLSeq.YAMLSeq.from(schema, obj, ctx)
+};
+
+exports.seq = seq;

claude-code-source/node_modules/yaml/dist/schema/common/string.js

@@ -0,0 +1,16 @@
+'use strict';
+
+var stringifyString = require('../../stringify/stringifyString.js');
+
+const string = {
+    identify: value => typeof value === 'string',
+    default: true,
+    tag: 'tag:yaml.org,2002:str',
+    resolve: str => str,
+    stringify(item, ctx, onComment, onChompKeep) {
+        ctx = Object.assign({ actualString: true }, ctx);
+        return stringifyString.stringifyString(item, ctx, onComment, onChompKeep);
+    }
+};
+
+exports.string = string;