fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/yaml/dist/compose/util-map-includes.js

@@ -0,0 +1,15 @@
+'use strict';
+
+var identity = require('../nodes/identity.js');
+
+function mapIncludes(ctx, items, search) {
+    const { uniqueKeys } = ctx.options;
+    if (uniqueKeys === false)
+        return false;
+    const isEqual = typeof uniqueKeys === 'function'
+        ? uniqueKeys
+        : (a, b) => a === b || (identity.isScalar(a) && identity.isScalar(b) && a.value === b.value);
+    return items.some(pair => isEqual(pair.key, search));
+}
+
+exports.mapIncludes = mapIncludes;