fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/yaml/dist/compose/resolve-end.js

@@ -0,0 +1,39 @@
+'use strict';
+
+function resolveEnd(end, offset, reqSpace, onError) {
+    let comment = '';
+    if (end) {
+        let hasSpace = false;
+        let sep = '';
+        for (const token of end) {
+            const { source, type } = token;
+            switch (type) {
+                case 'space':
+                    hasSpace = true;
+                    break;
+                case 'comment': {
+                    if (reqSpace && !hasSpace)
+                        onError(token, 'MISSING_CHAR', 'Comments must be separated from other tokens by white space characters');
+                    const cb = source.substring(1) || ' ';
+                    if (!comment)
+                        comment = cb;
+                    else
+                        comment += sep + cb;
+                    sep = '';
+                    break;
+                }
+                case 'newline':
+                    if (comment)
+                        sep += source;
+                    hasSpace = true;
+                    break;
+                default:
+                    onError(token, 'UNEXPECTED_TOKEN', `Unexpected ${type} at node end`);
+            }
+            offset += source.length;
+        }
+    }
+    return { comment, offset };
+}
+
+exports.resolveEnd = resolveEnd;