fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/xmlbuilder/lib/XMLDTDElement.js

@@ -0,0 +1,44 @@
+// Generated by CoffeeScript 2.4.1
+(function() {
+  var NodeType, XMLDTDElement, XMLNode;
+
+  XMLNode = require('./XMLNode');
+
+  NodeType = require('./NodeType');
+
+  // Represents an attribute
+  module.exports = XMLDTDElement = class XMLDTDElement extends XMLNode {
+    // Initializes a new instance of `XMLDTDElement`
+
+    // `parent` the parent `XMLDocType` element
+    // `name` element name
+    // `value` element content (defaults to #PCDATA)
+    constructor(parent, name, value) {
+      super(parent);
+      if (name == null) {
+        throw new Error("Missing DTD element name. " + this.debugInfo());
+      }
+      if (!value) {
+        value = '(#PCDATA)';
+      }
+      if (Array.isArray(value)) {
+        value = '(' + value.join(',') + ')';
+      }
+      this.name = this.stringify.name(name);
+      this.type = NodeType.ElementDeclaration;
+      this.value = this.stringify.dtdElementValue(value);
+    }
+
+    // Converts the XML fragment to string
+
+    // `options.pretty` pretty prints the result
+    // `options.indent` indentation for pretty print
+    // `options.offset` how many indentations to add to every line for pretty print
+    // `options.newline` newline sequence for pretty print
+    toString(options) {
+      return this.options.writer.dtdElement(this, this.options.writer.filterOptions(options));
+    }
+
+  };
+
+}).call(this);