fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/uuid/dist/md5.js

@@ -0,0 +1,23 @@
+"use strict";
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+exports.default = void 0;
+
+var _crypto = _interopRequireDefault(require("crypto"));
+
+function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; }
+
+function md5(bytes) {
+  if (Array.isArray(bytes)) {
+    bytes = Buffer.from(bytes);
+  } else if (typeof bytes === 'string') {
+    bytes = Buffer.from(bytes, 'utf8');
+  }
+
+  return _crypto.default.createHash('md5').update(bytes).digest();
+}
+
+var _default = md5;
+exports.default = _default;