fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/uuid/dist/index.js

@@ -0,0 +1,79 @@
+"use strict";
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+Object.defineProperty(exports, "v1", {
+  enumerable: true,
+  get: function () {
+    return _v.default;
+  }
+});
+Object.defineProperty(exports, "v3", {
+  enumerable: true,
+  get: function () {
+    return _v2.default;
+  }
+});
+Object.defineProperty(exports, "v4", {
+  enumerable: true,
+  get: function () {
+    return _v3.default;
+  }
+});
+Object.defineProperty(exports, "v5", {
+  enumerable: true,
+  get: function () {
+    return _v4.default;
+  }
+});
+Object.defineProperty(exports, "NIL", {
+  enumerable: true,
+  get: function () {
+    return _nil.default;
+  }
+});
+Object.defineProperty(exports, "version", {
+  enumerable: true,
+  get: function () {
+    return _version.default;
+  }
+});
+Object.defineProperty(exports, "validate", {
+  enumerable: true,
+  get: function () {
+    return _validate.default;
+  }
+});
+Object.defineProperty(exports, "stringify", {
+  enumerable: true,
+  get: function () {
+    return _stringify.default;
+  }
+});
+Object.defineProperty(exports, "parse", {
+  enumerable: true,
+  get: function () {
+    return _parse.default;
+  }
+});
+
+var _v = _interopRequireDefault(require("./v1.js"));
+
+var _v2 = _interopRequireDefault(require("./v3.js"));
+
+var _v3 = _interopRequireDefault(require("./v4.js"));
+
+var _v4 = _interopRequireDefault(require("./v5.js"));
+
+var _nil = _interopRequireDefault(require("./nil.js"));
+
+var _version = _interopRequireDefault(require("./version.js"));
+
+var _validate = _interopRequireDefault(require("./validate.js"));
+
+var _stringify = _interopRequireDefault(require("./stringify.js"));
+
+var _parse = _interopRequireDefault(require("./parse.js"));
+
+function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; }