fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/lodash-es/toPlainObject.js

@@ -0,0 +1,32 @@
+import copyObject from './_copyObject.js';
+import keysIn from './keysIn.js';
+
+/**
+ * Converts `value` to a plain object flattening inherited enumerable string
+ * keyed properties of `value` to own properties of the plain object.
+ *
+ * @static
+ * @memberOf _
+ * @since 3.0.0
+ * @category Lang
+ * @param {*} value The value to convert.
+ * @returns {Object} Returns the converted plain object.
+ * @example
+ *
+ * function Foo() {
+ *   this.b = 2;
+ * }
+ *
+ * Foo.prototype.c = 3;
+ *
+ * _.assign({ 'a': 1 }, new Foo);
+ * // => { 'a': 1, 'b': 2 }
+ *
+ * _.assign({ 'a': 1 }, _.toPlainObject(new Foo));
+ * // => { 'a': 1, 'b': 2, 'c': 3 }
+ */
+function toPlainObject(value) {
+  return copyObject(value, keysIn(value));
+}
+
+export default toPlainObject;