fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/lodash-es/_shortOut.js

@@ -0,0 +1,37 @@
+/** Used to detect hot functions by number of calls within a span of milliseconds. */
+var HOT_COUNT = 800,
+    HOT_SPAN = 16;
+
+/* Built-in method references for those with the same name as other `lodash` methods. */
+var nativeNow = Date.now;
+
+/**
+ * Creates a function that'll short out and invoke `identity` instead
+ * of `func` when it's called `HOT_COUNT` or more times in `HOT_SPAN`
+ * milliseconds.
+ *
+ * @private
+ * @param {Function} func The function to restrict.
+ * @returns {Function} Returns the new shortable function.
+ */
+function shortOut(func) {
+  var count = 0,
+      lastCalled = 0;
+
+  return function() {
+    var stamp = nativeNow(),
+        remaining = HOT_SPAN - (stamp - lastCalled);
+
+    lastCalled = stamp;
+    if (remaining > 0) {
+      if (++count >= HOT_COUNT) {
+        return arguments[0];
+      }
+    } else {
+      count = 0;
+    }
+    return func.apply(undefined, arguments);
+  };
+}
+
+export default shortOut;