fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/lodash-es/_isIndex.js

@@ -0,0 +1,25 @@
+/** Used as references for various `Number` constants. */
+var MAX_SAFE_INTEGER = 9007199254740991;
+
+/** Used to detect unsigned integer values. */
+var reIsUint = /^(?:0|[1-9]\d*)$/;
+
+/**
+ * Checks if `value` is a valid array-like index.
+ *
+ * @private
+ * @param {*} value The value to check.
+ * @param {number} [length=MAX_SAFE_INTEGER] The upper bounds of a valid index.
+ * @returns {boolean} Returns `true` if `value` is a valid index, else `false`.
+ */
+function isIndex(value, length) {
+  var type = typeof value;
+  length = length == null ? MAX_SAFE_INTEGER : length;
+
+  return !!length &&
+    (type == 'number' ||
+      (type != 'symbol' && reIsUint.test(value))) &&
+        (value > -1 && value % 1 == 0 && value < length);
+}
+
+export default isIndex;