fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/lodash-es/_initCloneObject.js

@@ -0,0 +1,18 @@
+import baseCreate from './_baseCreate.js';
+import getPrototype from './_getPrototype.js';
+import isPrototype from './_isPrototype.js';
+
+/**
+ * Initializes an object clone.
+ *
+ * @private
+ * @param {Object} object The object to clone.
+ * @returns {Object} Returns the initialized clone.
+ */
+function initCloneObject(object) {
+  return (typeof object.constructor == 'function' && !isPrototype(object))
+    ? baseCreate(getPrototype(object))
+    : {};
+}
+
+export default initCloneObject;