fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/lodash-es/_initCloneArray.js

@@ -0,0 +1,26 @@
+/** Used for built-in method references. */
+var objectProto = Object.prototype;
+
+/** Used to check objects for own properties. */
+var hasOwnProperty = objectProto.hasOwnProperty;
+
+/**
+ * Initializes an array clone.
+ *
+ * @private
+ * @param {Array} array The array to clone.
+ * @returns {Array} Returns the initialized clone.
+ */
+function initCloneArray(array) {
+  var length = array.length,
+      result = new array.constructor(length);
+
+  // Add properties assigned by `RegExp#exec`.
+  if (length && typeof array[0] == 'string' && hasOwnProperty.call(array, 'index')) {
+    result.index = array.index;
+    result.input = array.input;
+  }
+  return result;
+}
+
+export default initCloneArray;