fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/lodash-es/_cloneRegExp.js

@@ -0,0 +1,17 @@
+/** Used to match `RegExp` flags from their coerced string values. */
+var reFlags = /\w*$/;
+
+/**
+ * Creates a clone of `regexp`.
+ *
+ * @private
+ * @param {Object} regexp The regexp to clone.
+ * @returns {Object} Returns the cloned regexp.
+ */
+function cloneRegExp(regexp) {
+  var result = new regexp.constructor(regexp.source, reFlags.exec(regexp));
+  result.lastIndex = regexp.lastIndex;
+  return result;
+}
+
+export default cloneRegExp;