fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/lodash-es/_cloneArrayBuffer.js

@@ -0,0 +1,16 @@
+import Uint8Array from './_Uint8Array.js';
+
+/**
+ * Creates a clone of `arrayBuffer`.
+ *
+ * @private
+ * @param {ArrayBuffer} arrayBuffer The array buffer to clone.
+ * @returns {ArrayBuffer} Returns the cloned array buffer.
+ */
+function cloneArrayBuffer(arrayBuffer) {
+  var result = new arrayBuffer.constructor(arrayBuffer.byteLength);
+  new Uint8Array(result).set(new Uint8Array(arrayBuffer));
+  return result;
+}
+
+export default cloneArrayBuffer;