fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/lodash-es/_baseIsNative.js

@@ -0,0 +1,47 @@
+import isFunction from './isFunction.js';
+import isMasked from './_isMasked.js';
+import isObject from './isObject.js';
+import toSource from './_toSource.js';
+
+/**
+ * Used to match `RegExp`
+ * [syntax characters](http://ecma-international.org/ecma-262/7.0/#sec-patterns).
+ */
+var reRegExpChar = /[\\^$.*+?()[\]{}|]/g;
+
+/** Used to detect host constructors (Safari). */
+var reIsHostCtor = /^\[object .+?Constructor\]$/;
+
+/** Used for built-in method references. */
+var funcProto = Function.prototype,
+    objectProto = Object.prototype;
+
+/** Used to resolve the decompiled source of functions. */
+var funcToString = funcProto.toString;
+
+/** Used to check objects for own properties. */
+var hasOwnProperty = objectProto.hasOwnProperty;
+
+/** Used to detect if a method is native. */
+var reIsNative = RegExp('^' +
+  funcToString.call(hasOwnProperty).replace(reRegExpChar, '\\$&')
+  .replace(/hasOwnProperty|(function).*?(?=\\\()| for .+?(?=\\\])/g, '$1.*?') + '$'
+);
+
+/**
+ * The base implementation of `_.isNative` without bad shim checks.
+ *
+ * @private
+ * @param {*} value The value to check.
+ * @returns {boolean} Returns `true` if `value` is a native function,
+ *  else `false`.
+ */
+function baseIsNative(value) {
+  if (!isObject(value) || isMasked(value)) {
+    return false;
+  }
+  var pattern = isFunction(value) ? reIsNative : reIsHostCtor;
+  return pattern.test(toSource(value));
+}
+
+export default baseIsNative;