fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/lodash-es/_Stack.js

@@ -0,0 +1,27 @@
+import ListCache from './_ListCache.js';
+import stackClear from './_stackClear.js';
+import stackDelete from './_stackDelete.js';
+import stackGet from './_stackGet.js';
+import stackHas from './_stackHas.js';
+import stackSet from './_stackSet.js';
+
+/**
+ * Creates a stack cache object to store key-value pairs.
+ *
+ * @private
+ * @constructor
+ * @param {Array} [entries] The key-value pairs to cache.
+ */
+function Stack(entries) {
+  var data = this.__data__ = new ListCache(entries);
+  this.size = data.size;
+}
+
+// Add methods to `Stack`.
+Stack.prototype.clear = stackClear;
+Stack.prototype['delete'] = stackDelete;
+Stack.prototype.get = stackGet;
+Stack.prototype.has = stackHas;
+Stack.prototype.set = stackSet;
+
+export default Stack;