fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/indent-string/index.js

@@ -0,0 +1,38 @@
+export default function indentString(string, count = 1, options = {}) {
+	const {
+		indent = ' ',
+		includeEmptyLines = false
+	} = options;
+
+	if (typeof string !== 'string') {
+		throw new TypeError(
+			`Expected \`input\` to be a \`string\`, got \`${typeof string}\``
+		);
+	}
+
+	if (typeof count !== 'number') {
+		throw new TypeError(
+			`Expected \`count\` to be a \`number\`, got \`${typeof count}\``
+		);
+	}
+
+	if (count < 0) {
+		throw new RangeError(
+			`Expected \`count\` to be at least 0, got \`${count}\``
+		);
+	}
+
+	if (typeof indent !== 'string') {
+		throw new TypeError(
+			`Expected \`options.indent\` to be a \`string\`, got \`${typeof indent}\``
+		);
+	}
+
+	if (count === 0) {
+		return string;
+	}
+
+	const regex = includeEmptyLines ? /^/gm : /^(?!\s*$)/gm;
+
+	return string.replace(regex, indent.repeat(count));
+}