fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/highlight.js/lib/languages/php-template.js

@@ -0,0 +1,54 @@
+/*
+Language: PHP Template
+Requires: xml.js, php.js
+Author: Josh Goebel <hello@joshgoebel.com>
+Website: https://www.php.net
+Category: common
+*/
+
+function phpTemplate(hljs) {
+  return {
+    name: "PHP template",
+    subLanguage: 'xml',
+    contains: [
+      {
+        begin: /<\?(php|=)?/,
+        end: /\?>/,
+        subLanguage: 'php',
+        contains: [
+          // We don't want the php closing tag ?> to close the PHP block when
+          // inside any of the following blocks:
+          {
+            begin: '/\\*',
+            end: '\\*/',
+            skip: true
+          },
+          {
+            begin: 'b"',
+            end: '"',
+            skip: true
+          },
+          {
+            begin: 'b\'',
+            end: '\'',
+            skip: true
+          },
+          hljs.inherit(hljs.APOS_STRING_MODE, {
+            illegal: null,
+            className: null,
+            contains: null,
+            skip: true
+          }),
+          hljs.inherit(hljs.QUOTE_STRING_MODE, {
+            illegal: null,
+            className: null,
+            contains: null,
+            skip: true
+          })
+        ]
+      }
+    ]
+  };
+}
+
+module.exports = phpTemplate;