fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/highlight.js/lib/languages/mizar.js

@@ -0,0 +1,29 @@
+/*
+Language: Mizar
+Description: The Mizar Language is a formal language derived from the mathematical vernacular.
+Author: Kelley van Evert <kelleyvanevert@gmail.com>
+Website: http://mizar.org/language/
+Category: scientific
+*/
+
+function mizar(hljs) {
+  return {
+    name: 'Mizar',
+    keywords:
+      'environ vocabularies notations constructors definitions ' +
+      'registrations theorems schemes requirements begin end definition ' +
+      'registration cluster existence pred func defpred deffunc theorem ' +
+      'proof let take assume then thus hence ex for st holds consider ' +
+      'reconsider such that and in provided of as from be being by means ' +
+      'equals implies iff redefine define now not or attr is mode ' +
+      'suppose per cases set thesis contradiction scheme reserve struct ' +
+      'correctness compatibility coherence symmetry assymetry ' +
+      'reflexivity irreflexivity connectedness uniqueness commutativity ' +
+      'idempotence involutiveness projectivity',
+    contains: [
+      hljs.COMMENT('::', '$')
+    ]
+  };
+}
+
+module.exports = mizar;