fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/ajv/dist/compile/ref_error.js

@@ -0,0 +1,12 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+const resolve_1 = require("./resolve");
+class MissingRefError extends Error {
+    constructor(resolver, baseId, ref, msg) {
+        super(msg || `can't resolve reference ${ref} from id ${baseId}`);
+        this.missingRef = (0, resolve_1.resolveUrl)(resolver, baseId, ref);
+        this.missingSchema = (0, resolve_1.normalizeId)((0, resolve_1.getFullPath)(resolver, this.missingRef));
+    }
+}
+exports.default = MissingRefError;
+//# sourceMappingURL=ref_error.js.map