fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/node_modules/@commander-js/extra-typings/esm.mjs

@@ -0,0 +1,16 @@
+import extraTypingsCommander from './index.js';
+
+// wrapper to provide named exports for ESM.
+export const {
+  program,
+  createCommand,
+  createArgument,
+  createOption,
+  CommanderError,
+  InvalidArgumentError,
+  InvalidOptionArgumentError, // deprecated old name
+  Command,
+  Argument,
+  Option,
+  Help,
+} = extraTypingsCommander;