fix: keep only source-map extracted node_modules, exclude pnpm artifacts

Restore node_modules to exact state from cli.js.map extraction:
- Move .ignored/ and .ignored_* files back to original package paths
- Remove pnpm symlinks (replaced by real source-map directories)
- Update .gitignore: only exclude /dist/, .pnpm/, .bin/, .ignored* dirs
- All package dist/ folders are now preserved as part of source-map files

After clone, run `pnpm install` to get pnpm-managed symlinks for building.
The committed node_modules contains the original TypeScript/JS source files
as bundled in cli.js.

claude-code-source/.gitignore

@@ -1,91 +1,13 @@
-# Build output
-dist/
+# Build output (top-level only, not node_modules/*/dist)
+/dist/
 
-# pnpm internals (generated by pnpm install)
+# pnpm internals (generated by pnpm install, not from source map)
 node_modules/.pnpm/
 node_modules/.bin/
 node_modules/.modules.yaml
 node_modules/.pnpm-workspace-state-v1.json
 
-# pnpm-installed packages (symlinks to .pnpm, regenerated by pnpm install)
-# --- scoped ---
-node_modules/@alcalzone/
-node_modules/@anthropic-ai/bedrock-sdk/
-node_modules/@anthropic-ai/foundry-sdk/
-node_modules/@anthropic-ai/sdk/
-node_modules/@anthropic-ai/vertex-sdk/
-node_modules/@aws-crypto/
-node_modules/@aws-sdk/
-node_modules/@azure/
-node_modules/@commander-js/
-node_modules/@growthbook/
-node_modules/@modelcontextprotocol/
-node_modules/@opentelemetry/
-node_modules/@smithy/
-node_modules/@types/
-node_modules/@xmldom/
-# --- unscoped ---
-node_modules/ajv/
-node_modules/ajv-formats/
-node_modules/asciichart/
-node_modules/auto-bind/
-node_modules/axios/
-node_modules/bidi-js/
-node_modules/bun-types/
-node_modules/chalk/
-node_modules/chokidar/
-node_modules/cli-boxes/
-node_modules/code-excerpt/
-node_modules/commander/
-node_modules/diff/
-node_modules/emoji-regex/
-node_modules/env-paths/
-node_modules/execa/
-node_modules/fflate/
-node_modules/figures/
-node_modules/fuse.js/
-node_modules/get-east-asian-width/
-node_modules/google-auth-library/
-node_modules/highlight.js/
-node_modules/https-proxy-agent/
-node_modules/ignore/
-node_modules/indent-string/
-node_modules/ink/
-node_modules/jsonc-parser/
-node_modules/lodash-es/
-node_modules/lru-cache/
-node_modules/marked/
-node_modules/p-map/
-node_modules/picomatch/
-node_modules/proper-lockfile/
-node_modules/qrcode/
-node_modules/react/
-node_modules/react-reconciler/
-node_modules/semver/
-node_modules/shell-quote/
-node_modules/signal-exit/
-node_modules/stack-utils/
-node_modules/strip-ansi/
-node_modules/supports-hyperlinks/
-node_modules/tree-kill/
-node_modules/turndown/
-node_modules/type-fest/
-node_modules/typescript/
-node_modules/undici/
-node_modules/usehooks-ts/
-node_modules/vscode-jsonrpc/
-node_modules/vscode-languageserver-protocol/
-node_modules/vscode-languageserver-types/
-node_modules/wrap-ansi/
-node_modules/ws/
-node_modules/xmlbuilder/
-node_modules/xss/
-node_modules/yaml/
-node_modules/zod/
-node_modules/zod-to-json-schema/
-
-# pnpm-renamed source-map directories (stale, replaced by installed packages)
-node_modules/**/.ignored_*/
-node_modules/.ignored_*/
+# pnpm artefacts: source-map dirs moved aside during install
 node_modules/.ignored/
-node_modules/.ignored_*
+node_modules/.ignored_*/
+node_modules/**/.ignored_*/